Rorug05G0353600

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000294
Physical Location & Seq
Reverse (-)
44138564 .. 44138716
153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0353600.1

Sequence Viewer

Length: 153 bp
ATGTTTCTCGAGAAGCTAATTTCGTTGCTAATGCTGTTACAAATATGGGTCACAAGTCGTCTACACCTATCACTTGATCAAAGAAGTTGTCTTTCTCAGCTTTGCCTGTTTTTAATTTTGATCAGTTTAGTTTTGGTTGTAGTAGGGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

50

Amino Acids

5.73

Weight (kDa)

7.85

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 61
AluBI AGCT 2 cut(s) 16, 100
AluI AGCT 2 cut(s) 16, 100
Ama87I CYCGRG 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
AvaI CYCGRG 1 cut(s) 8
BclI TGATCA 2 cut(s) 76, 120
BmeT110I CYCGRG 1 cut(s) 8
BseMII CTCAG 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 8
Bsp143I GATC 2 cut(s) 76, 120
BspCNI CTCAG 1 cut(s) 109
BssMI GATC 2 cut(s) 76, 120
BstDEI CTNAG 1 cut(s) 96
BstKTI GATC 2 cut(s) 79, 123
BstMBI GATC 2 cut(s) 76, 120
CviJI RGCY 3 cut(s) 16, 100, 148
CviKI_1 RGCY 3 cut(s) 16, 100, 148
DdeI CTNAG 1 cut(s) 96
DpnI GATC 2 cut(s) 78, 122
DpnII GATC 2 cut(s) 76, 120
Eco88I CYCGRG 1 cut(s) 8
FaiI YATR 1 cut(s) 46
FbaI TGATCA 2 cut(s) 76, 120
FblI GTMKAC 1 cut(s) 61
FspEI CC 7 cut(s) 31, 32, 80, 119, 119, 129, 130
Hpy166II GTNNAC 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 8, 10
Hpy8I GTNNAC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 96
Ksp22I TGATCA 2 cut(s) 76, 120
Kzo9I GATC 2 cut(s) 76, 120
LpnPI CCDG 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 36, 49
MalI GATC 2 cut(s) 78, 122
MboI GATC 2 cut(s) 76, 120
MluCI AATT 2 cut(s) 18, 114
MseI TTAA 2 cut(s) 113, 151
NdeII GATC 2 cut(s) 76, 120
NmuCI GTSAC 1 cut(s) 49
PaeR7I CTCGAG 1 cut(s) 8
SaqAI TTAA 2 cut(s) 113, 151
Sau3AI GATC 2 cut(s) 76, 120
SetI ASST 3 cut(s) 18, 69, 102
Sfr274I CTCGAG 1 cut(s) 8
SgeI CNNG 5 cut(s) 20, 22, 66, 86, 118
SlaI CTCGAG 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 2 cut(s) 18, 114
TaqI TCGA 1 cut(s) 9
TasI AATT 2 cut(s) 18, 114
Tru1I TTAA 2 cut(s) 113, 151
Tru9I TTAA 2 cut(s) 113, 151
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.