Rroxscaffold_4G00312720

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000294
Physical Location & Seq
Reverse (-)
35867135 .. 35868531
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00312720.1

Sequence Viewer

Length: 666 bp
ATGACAGTCAAACAGATACAGTTAAACTCAAGGGGAAACTATATAGGTTACCAATCGGGTTCCTTAGGAGTTATAGTGAACTTGAATTTCAAAGGGCTTAAGCCATATCGTTCAAGTGAGGAGTATTTTGTTGCTTTATCAAAAGGAAGCAAGCATAATGGTGTTTCTGGGGTTATTGACGAGGTTCCATACATCAACATCTTCCTCGCAAACTATTCTGCTGACTACTCGATGATTAAAACCAAGTCTATCACCAATGGTTTTGCCTTTGTTTTCCCTAAAGGTTCGAAATTGGTTCAAGATGTGTCGAGGCAAATTGAACGTCTGAGACAGGAAGAAACGCTTATAGAGATGGAGAAGACCTGGTTTCTTAGAAAAACAACTCTCATGTCAGATGAGGATATTAATAAGAAAGATCCCAATACGATTGACCTCTACGACGTCCGCGGTCTATTCCTTATTAGTGGCGCTTCTTTAGCGATTGCTCTTTTCTTATTCATAGTTGTATCCCATAGATTTAGAAATCTGATTAGAGGACTAGTGCAGTTGATTGGAAGACAACTACAGCGTTTAAGGATGTTTGTCTCCAACAAAGTATGCAGTAGAACTGAACAAAACTGCTGCATGTCACTTCCTATGCAATTGTACATATACACTGTCCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

221

Amino Acids

25.32

Weight (kDa)

9.66

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 444
AccII CGCG 1 cut(s) 447
AciI CCGC 2 cut(s) 445, 447
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 1 cut(s) 85
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 1 cut(s) 647
AflII CTTAAG 1 cut(s) 98
AgsI TTSAA 5 cut(s) 85, 91, 114, 299, 320
AhlI ACTAGT 1 cut(s) 538
AjnI CCWGG 1 cut(s) 362
Alw26I GTCTC 2 cut(s) 322, 589
AlwI GGATC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 621
ApoI RAATTY 1 cut(s) 85
ArsI GACNNNNNNTTYG 2 cut(s) 307, 339
AseI ATTAAT 1 cut(s) 405
AspLEI GCGC 1 cut(s) 470
AsuHPI GGTGA 1 cut(s) 244
AsuII TTCGAA 1 cut(s) 287
AxyI CCTNAGG 1 cut(s) 64
BbsI GAAGAC 2 cut(s) 365, 562
BbvI GCAGC 1 cut(s) 608
BccI CCATC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 364
BciVI GTATCC 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 322, 589
BcuI ACTAGT 1 cut(s) 538
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 1 cut(s) 563
BfoI RGCGCY 1 cut(s) 471
BfrI CTTAAG 1 cut(s) 98
BfuI GTATCC 1 cut(s) 517
BisI GCNGC 1 cut(s) 622
BlsI GCNGC 1 cut(s) 623
Bme1390I CCNGG 1 cut(s) 364
BmiI GGNNCC 2 cut(s) 61, 186
BmrFI CCNGG 1 cut(s) 364
BpiI GAAGAC 2 cut(s) 365, 562
Bpu14I TTCGAA 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 445
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bse21I CCTNAGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 445
BseGI GGATG 1 cut(s) 582
BseMII CTCAG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 608
BsgI GTGCAG 1 cut(s) 563
Bsh1236I CGCG 1 cut(s) 447
BsmAI GTCTC 2 cut(s) 322, 589
Bsp119I TTCGAA 1 cut(s) 287
Bsp1407I TGTACA 1 cut(s) 645
Bsp143I GATC 1 cut(s) 415
BspACI CCGC 2 cut(s) 445, 447
BspCNI CTCAG 1 cut(s) 318
BspFNI CGCG 1 cut(s) 447
BspLI GGNNCC 2 cut(s) 61, 186
BspPI GGATC 1 cut(s) 410
BspT104I TTCGAA 1 cut(s) 287
BspTI CTTAAG 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 645
BssECI CCNNGG 1 cut(s) 445
BssMI GATC 1 cut(s) 415
BssNI GRCGYC 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 3 cut(s) 7, 21, 658
BstACI GRCGYC 1 cut(s) 441
BstAFI CTTAAG 1 cut(s) 98
BstAUI TGTACA 1 cut(s) 645
BstBI TTCGAA 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 3 cut(s) 64, 326, 371
BstDSI CCRYGG 1 cut(s) 445
BstEII GGTNACC 1 cut(s) 47
BstF5I GGATG 1 cut(s) 582
BstFNI CGCG 1 cut(s) 447
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 2 cut(s) 322, 589
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 1 cut(s) 628
BstPI GGTNACC 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 362
BstSFI CTRYAG 1 cut(s) 563
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 1 cut(s) 608
BstV2I GAAGAC 2 cut(s) 365, 562
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
Bsu36I CCTNAGG 1 cut(s) 64
BsuI GTATCC 1 cut(s) 517
BtgI CCRYGG 1 cut(s) 445
BtsCI GGATG 1 cut(s) 582
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 1 cut(s) 152
CfoI GCGC 1 cut(s) 470
Cfr42I CCGCGG 1 cut(s) 448
CsiI ACCWGGT 1 cut(s) 362
Csp6I GTAC 1 cut(s) 646
CviAII CATG 2 cut(s) 388, 625
CviJI RGCY 2 cut(s) 97, 103
CviKI_1 RGCY 2 cut(s) 97, 103
CviQI GTAC 1 cut(s) 646
DdeI CTNAG 3 cut(s) 64, 326, 371
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eco81I CCTNAGG 1 cut(s) 64
Eco91I GGTNACC 1 cut(s) 47
EcoO65I GGTNACC 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 362
FaeI CATG 2 cut(s) 391, 628
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 2 cut(s) 387, 624
Fnu4HI GCNGC 1 cut(s) 622
FokI GGATG 1 cut(s) 589
Fsp4HI GCNGC 1 cut(s) 622
FspBI CTAG 1 cut(s) 539
GlaI GCGC 1 cut(s) 469
GluI GCNGC 1 cut(s) 622
HaeII RGCGCY 1 cut(s) 471
HhaI GCGC 1 cut(s) 470
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 2 cut(s) 391, 628
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 4 cut(s) 327, 394, 528, 662
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 443
HpyCH4III ACNGT 3 cut(s) 7, 21, 658
HpyCH4IV ACGT 2 cut(s) 322, 441
HpyCH4V TGCA 4 cut(s) 544, 600, 624, 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 3 cut(s) 64, 326, 371
HpySE526I ACGT 2 cut(s) 322, 441
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 2 cut(s) 391, 628
HspAI GCGC 1 cut(s) 468
KspI CCGCGG 1 cut(s) 448
Kzo9I GATC 1 cut(s) 415
LpnPI CCDG 4 cut(s) 153, 317, 349, 376
Lsp1109I GCAGC 1 cut(s) 608
MabI ACCWGGT 1 cut(s) 362
MaeI CTAG 1 cut(s) 539
MaeII ACGT 2 cut(s) 322, 441
MaeIII GTNAC 2 cut(s) 47, 627
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 4 cut(s) 193, 347, 370, 567
MfeI CAATTG 1 cut(s) 641
MflI RGATCY 1 cut(s) 415
MluCI AATT 4 cut(s) 85, 290, 315, 641
MmeI TCCRAC 1 cut(s) 612
MnlI CCTC 7 cut(s) 112, 175, 215, 303, 391, 443, 527
MseI TTAA 5 cut(s) 23, 99, 237, 405, 572
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 447
MspCI CTTAAG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 364
MunI CAATTG 1 cut(s) 641
MvaI CCWGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeII GATC 1 cut(s) 415
NlaIII CATG 2 cut(s) 391, 628
NlaIV GGNNCC 2 cut(s) 61, 186
NmuCI GTSAC 1 cut(s) 627
NspI RCATGY 1 cut(s) 628
NspV TTCGAA 1 cut(s) 287
PkrI GCNGC 1 cut(s) 623
PshBI ATTAAT 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 362
PspEI GGTNACC 1 cut(s) 47
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 61, 186
PsuI RGATCY 1 cut(s) 415
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
RseI CAYNNNNRTG 1 cut(s) 159
SacII CCGCGG 1 cut(s) 448
SaqAI TTAA 5 cut(s) 23, 99, 237, 405, 572
SatI GCNGC 1 cut(s) 622
Sau3AI GATC 1 cut(s) 415
ScrFI CCNGG 1 cut(s) 364
SetI ASST 7 cut(s) 49, 186, 286, 325, 365, 435, 444
SexAI ACCWGGT 1 cut(s) 362
SfcI CTRYAG 1 cut(s) 563
Sfr303I CCGCGG 1 cut(s) 448
SfuI TTCGAA 1 cut(s) 287
SgrBI CCGCGG 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 28, 98
SmoI CTYRAG 2 cut(s) 28, 98
SpeI ACTAGT 1 cut(s) 538
Sse9I AATT 4 cut(s) 85, 290, 315, 641
SsiI CCGC 2 cut(s) 445, 447
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 3 cut(s) 7, 21, 658
TaiI ACGT 2 cut(s) 325, 444
TaqI TCGA 3 cut(s) 230, 287, 308
TasI AATT 4 cut(s) 85, 290, 315, 641
TatI WGTACW 1 cut(s) 645
Tru1I TTAA 5 cut(s) 23, 99, 237, 405, 572
Tru9I TTAA 5 cut(s) 23, 99, 237, 405, 572
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 1 cut(s) 627
TseI GCWGC 1 cut(s) 621
Tsp45I GTSAC 1 cut(s) 627
TspDTI ATGAA 1 cut(s) 487
TspRI CASTG 1 cut(s) 661
Vha464I CTTAAG 1 cut(s) 98
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 1 cut(s) 85
XceI RCATGY 1 cut(s) 628
XspI CTAG 1 cut(s) 539
ZraI GACGTC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.