Glutamate receptor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ANF_receptor | PF01094 | 53 - 358 | 4e-56 | Receptor family ligand binding region |
| Lig_chan-Glu_bd | PF10613 | 436 - 527 | 1.3e-08 | Ligated ion channel L-glutamate- and glycine-binding site |
| SBP_bac_3 | PF00497 | 442 - 742 | 4.6e-11 | Bacterial extracellular solute-binding proteins, family 3 |
| Lig_chan | PF00060 | 540 - 769 | 1.7e-28 | Ligand-gated ion channel |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1386 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 722 |
| AccI | GTMKAC | 1 cut(s) | 127 |
| AclWI | GGATC | 5 cut(s) | 939, 952, 1210, 1717, 2032 |
| AcoI | YGGCCR | 1 cut(s) | 1797 |
| AcsI | RAATTY | 5 cut(s) | 697, 816, 1417, 1894, 2175 |
| AcuI | CTGAAG | 2 cut(s) | 11, 2295 |
| AfaI | GTAC | 7 cut(s) | 24, 33, 282, 1392, 1439, 1572, 2260 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 98, 807, 2255 |
| AflIII | ACRYGT | 3 cut(s) | 1590, 1634, 2157 |
| AhlI | ACTAGT | 2 cut(s) | 122, 689 |
| AjnI | CCWGG | 5 cut(s) | 671, 1195, 1687, 1704, 2216 |
| Alw21I | GWGCWC | 4 cut(s) | 437, 558, 615, 920 |
| Alw26I | GTCTC | 3 cut(s) | 291, 765, 1813 |
| AlwI | GGATC | 5 cut(s) | 939, 952, 1210, 1717, 2032 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2318 |
| Ama87I | CYCGRG | 1 cut(s) | 1216 |
| AoxI | GGCC | 6 cut(s) | 37, 1100, 1193, 1797, 1943, 2214 |
| ApeKI | GCWGC | 5 cut(s) | 1364, 1720, 2274, 2315, 2318 |
| ApoI | RAATTY | 5 cut(s) | 697, 816, 1417, 1894, 2175 |
| AseI | ATTAAT | 1 cut(s) | 57 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 382 |
| AspS9I | GGNCC | 2 cut(s) | 1943, 2427 |
| AsuC2I | CCSGG | 1 cut(s) | 2256 |
| AsuHPI | GGTGA | 2 cut(s) | 1022, 1093 |
| AsuII | TTCGAA | 1 cut(s) | 1359 |
| AvaI | CYCGRG | 1 cut(s) | 1216 |
| AvaII | GGWCC | 1 cut(s) | 2427 |
| BalI | TGGCCA | 1 cut(s) | 1799 |
| BamHI | GGATCC | 1 cut(s) | 944 |
| BanII | GRGCYC | 2 cut(s) | 558, 898 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 264, 296 |
| BbsI | GAAGAC | 1 cut(s) | 584 |
| Bbv12I | GWGCWC | 4 cut(s) | 437, 558, 615, 920 |
| BbvCI | CCTCAGC | 1 cut(s) | 2270 |
| BbvI | GCAGC | 5 cut(s) | 1351, 1732, 2286, 2302, 2305 |
| BccI | CCATC | 6 cut(s) | 469, 860, 1182, 1220, 2200, 2352 |
| BceAI | ACGGC | 1 cut(s) | 115 |
| BciT130I | CCWGG | 5 cut(s) | 673, 1197, 1689, 1706, 2218 |
| BciVI | GTATCC | 1 cut(s) | 2079 |
| BcnI | CCSGG | 1 cut(s) | 2256 |
| BcoDI | GTCTC | 3 cut(s) | 291, 765, 1813 |
| BcuI | ACTAGT | 2 cut(s) | 122, 689 |
| BfaI | CTAG | 7 cut(s) | 123, 582, 690, 845, 990, 2060, 2282 |
| BfmI | CTRYAG | 1 cut(s) | 1466 |
| BfuI | GTATCC | 1 cut(s) | 2079 |
| BglII | AGATCT | 2 cut(s) | 1514, 2226 |
| BisI | GCNGC | 5 cut(s) | 1365, 1721, 2275, 2316, 2319 |
| BlsI | GCNGC | 5 cut(s) | 1366, 1722, 2276, 2317, 2320 |
| BmcAI | AGTACT | 1 cut(s) | 282 |
| Bme1390I | CCNGG | 6 cut(s) | 673, 1197, 1689, 1706, 2218, 2256 |
| Bme18I | GGWCC | 1 cut(s) | 2427 |
| BmeT110I | CYCGRG | 1 cut(s) | 1216 |
| BmgT120I | GGNCC | 2 cut(s) | 1943, 2427 |
| BmiI | GGNNCC | 4 cut(s) | 831, 946, 1266, 1608 |
| BmrFI | CCNGG | 6 cut(s) | 673, 1197, 1689, 1706, 2218, 2256 |
| BmrI | ACTGGG | 1 cut(s) | 272 |
| BmsI | GCATC | 6 cut(s) | 874, 1468, 1877, 1975, 2224, 2400 |
| BmuI | ACTGGG | 1 cut(s) | 272 |
| BpiI | GAAGAC | 1 cut(s) | 584 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1406, 1438 |
| BpmI | CTGGAG | 2 cut(s) | 1218, 1509 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2270 |
| Bpu14I | TTCGAA | 1 cut(s) | 1359 |
| BpuEI | CTTGAG | 1 cut(s) | 1888 |
| BpuMI | CCSGG | 1 cut(s) | 2256 |
| Bsa29I | ATCGAT | 1 cut(s) | 325 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1714 |
| BsaJI | CCNNGG | 3 cut(s) | 711, 1422, 1705 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 258, 288 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 98, 807, 2255 |
| Bse1I | ACTGG | 5 cut(s) | 278, 946, 1268, 1848, 2305 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1714 |
| BseBI | CCWGG | 5 cut(s) | 673, 1197, 1689, 1706, 2218 |
| BseCI | ATCGAT | 1 cut(s) | 325 |
| BseDI | CCNNGG | 3 cut(s) | 711, 1422, 1705 |
| BseGI | GGATG | 4 cut(s) | 361, 418, 1635, 1844 |
| BseJI | GATNNNNATC | 1 cut(s) | 1714 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 98, 807, 2255 |
| BseMII | CTCAG | 5 cut(s) | 380, 1229, 2244, 2284, 2384 |
| BseNI | ACTGG | 5 cut(s) | 278, 946, 1268, 1848, 2305 |
| BseRI | GAGGAG | 4 cut(s) | 279, 517, 566, 842 |
| BseXI | GCAGC | 5 cut(s) | 1351, 1732, 2286, 2302, 2305 |
| BseYI | CCCAGC | 1 cut(s) | 748 |
| BsgI | GTGCAG | 2 cut(s) | 243, 882 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1815 |
| BshFI | GGCC | 6 cut(s) | 39, 1102, 1195, 1799, 1945, 2216 |
| BshVI | ATCGAT | 1 cut(s) | 325 |
| BsiEI | CGRYCG | 1 cut(s) | 1815 |
| BsiHKAI | GWGCWC | 4 cut(s) | 437, 558, 615, 920 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1216 |
| BsiSI | CCGG | 2 cut(s) | 770, 2256 |
| BslFI | GGGAC | 2 cut(s) | 260, 2329 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 98, 807, 2255 |
| BsmAI | GTCTC | 3 cut(s) | 291, 765, 1813 |
| BsmFI | GGGAC | 2 cut(s) | 260, 2329 |
| BsmI | GAATGC | 1 cut(s) | 1162 |
| BsnI | GGCC | 6 cut(s) | 39, 1102, 1195, 1799, 1945, 2216 |
| BsoBI | CYCGRG | 1 cut(s) | 1216 |
| Bsp119I | TTCGAA | 1 cut(s) | 1359 |
| Bsp1286I | GDGCHC | 5 cut(s) | 437, 558, 615, 898, 920 |
| Bsp19I | CCATGG | 1 cut(s) | 711 |
| BspANI | GGCC | 6 cut(s) | 39, 1102, 1195, 1799, 1945, 2216 |
| BspCNI | CTCAG | 5 cut(s) | 379, 1230, 2243, 2283, 2385 |
| BspDI | ATCGAT | 1 cut(s) | 325 |
| BspHI | TCATGA | 2 cut(s) | 567, 1122 |
| BspLI | GGNNCC | 4 cut(s) | 831, 946, 1266, 1608 |
| BspPI | GGATC | 5 cut(s) | 939, 952, 1210, 1717, 2032 |
| BspT104I | TTCGAA | 1 cut(s) | 1359 |
| BsrI | ACTGG | 5 cut(s) | 278, 946, 1268, 1848, 2305 |
| BssECI | CCNNGG | 3 cut(s) | 711, 1422, 1705 |
| BssNAI | GTATAC | 1 cut(s) | 128 |
| BssT1I | CCWWGG | 1 cut(s) | 711 |
| Bst1107I | GTATAC | 1 cut(s) | 128 |
| Bst2UI | CCWGG | 5 cut(s) | 673, 1197, 1689, 1706, 2218 |
| Bst4CI | ACNGT | 3 cut(s) | 285, 1882, 1969 |
| Bst6I | CTCTTC | 2 cut(s) | 1081, 2028 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 745, 884 |
| BstBI | TTCGAA | 1 cut(s) | 1359 |
| BstDEI | CTNAG | 6 cut(s) | 366, 1142, 1238, 2230, 2270, 2393 |
| BstDSI | CCRYGG | 1 cut(s) | 711 |
| BstF5I | GGATG | 4 cut(s) | 361, 418, 1635, 1844 |
| BstMAI | GTCTC | 3 cut(s) | 291, 765, 1813 |
| BstMCI | CGRYCG | 1 cut(s) | 1815 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 562, 745, 884, 893, 1865 |
| BstNI | CCWGG | 5 cut(s) | 673, 1197, 1689, 1706, 2218 |
| BstNSI | RCATGY | 4 cut(s) | 1594, 1638, 2161, 2366 |
| BstSCI | CCNGG | 6 cut(s) | 671, 1195, 1687, 1704, 2216, 2254 |
| BstSFI | CTRYAG | 1 cut(s) | 1466 |
| BstV1I | GCAGC | 5 cut(s) | 1351, 1732, 2286, 2302, 2305 |
| BstV2I | GAAGAC | 1 cut(s) | 584 |
| BstX2I | RGATCY | 4 cut(s) | 944, 1514, 2037, 2226 |
| BstYI | RGATCY | 4 cut(s) | 944, 1514, 2037, 2226 |
| BstZ17I | GTATAC | 1 cut(s) | 128 |
| Bsu15I | ATCGAT | 1 cut(s) | 325 |
| BsuI | GTATCC | 1 cut(s) | 2079 |
| BsuRI | GGCC | 6 cut(s) | 39, 1102, 1195, 1799, 1945, 2216 |
| BsuTUI | ATCGAT | 1 cut(s) | 325 |
| BtgI | CCRYGG | 1 cut(s) | 711 |
| BtgZI | GCGATG | 1 cut(s) | 1701 |
| BtsCI | GGATG | 4 cut(s) | 361, 418, 1635, 1844 |
| BtsI | GCAGTG | 1 cut(s) | 2244 |
| BtsIMutI | CAGTG | 1 cut(s) | 2244 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2318 |
| CciI | TCATGA | 2 cut(s) | 567, 1122 |
| Cfr13I | GGNCC | 2 cut(s) | 1943, 2427 |
| ClaI | ATCGAT | 1 cut(s) | 325 |
| CseI | GACGC | 1 cut(s) | 1673 |
| Csp6I | GTAC | 7 cut(s) | 23, 32, 281, 1391, 1438, 1571, 2259 |
| CviQI | GTAC | 7 cut(s) | 23, 32, 281, 1391, 1438, 1571, 2259 |
| DdeI | CTNAG | 6 cut(s) | 366, 1142, 1238, 2230, 2270, 2393 |
| DraI | TTTAAA | 2 cut(s) | 997, 1899 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 722 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 722 |
| EaeI | YGGCCR | 1 cut(s) | 1797 |
| Eam1104I | CTCTTC | 2 cut(s) | 1081, 2028 |
| EarI | CTCTTC | 2 cut(s) | 1081, 2028 |
| Ecl136II | GAGCTC | 1 cut(s) | 556 |
| Eco130I | CCWWGG | 1 cut(s) | 711 |
| Eco147I | AGGCCT | 2 cut(s) | 39, 2216 |
| Eco24I | GRGCYC | 2 cut(s) | 558, 898 |
| Eco32I | GATATC | 2 cut(s) | 329, 1022 |
| Eco47I | GGWCC | 1 cut(s) | 2427 |
| Eco53kI | GAGCTC | 1 cut(s) | 556 |
| Eco57I | CTGAAG | 2 cut(s) | 11, 2295 |
| Eco88I | CYCGRG | 1 cut(s) | 1216 |
| EcoICRI | GAGCTC | 1 cut(s) | 556 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2427 |
| EcoRI | GAATTC | 1 cut(s) | 1417 |
| EcoRII | CCWGG | 5 cut(s) | 671, 1195, 1687, 1704, 2216 |
| EcoRV | GATATC | 2 cut(s) | 329, 1022 |
| EcoT14I | CCWWGG | 1 cut(s) | 711 |
| EcoT22I | ATGCAT | 2 cut(s) | 448, 957 |
| EcoT38I | GRGCYC | 2 cut(s) | 558, 898 |
| ErhI | CCWWGG | 1 cut(s) | 711 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 68, 100, 2181, 2213 |
| FaqI | GGGAC | 2 cut(s) | 260, 2329 |
| FauNDI | CATATG | 3 cut(s) | 880, 1190, 1474 |
| FblI | GTMKAC | 1 cut(s) | 127 |
| Fnu4HI | GCNGC | 5 cut(s) | 1365, 1721, 2275, 2316, 2319 |
| FokI | GGATG | 4 cut(s) | 368, 425, 1642, 1831 |
| FriOI | GRGCYC | 2 cut(s) | 558, 898 |
| Fsp4HI | GCNGC | 5 cut(s) | 1365, 1721, 2275, 2316, 2319 |
| FspBI | CTAG | 7 cut(s) | 123, 582, 690, 845, 990, 2060, 2282 |
| GluI | GCNGC | 5 cut(s) | 1365, 1721, 2275, 2316, 2319 |
| GsaI | CCCAGC | 1 cut(s) | 752 |
| GsuI | CTGGAG | 2 cut(s) | 1218, 1509 |
| HaeIII | GGCC | 6 cut(s) | 39, 1102, 1195, 1799, 1945, 2216 |
| HapII | CCGG | 2 cut(s) | 770, 2256 |
| HgaI | GACGC | 1 cut(s) | 1673 |
| HincII | GTYRAC | 2 cut(s) | 296, 964 |
| HindII | GTYRAC | 2 cut(s) | 296, 964 |
| HindIII | AAGCTT | 1 cut(s) | 2195 |
| HinfI | GANTC | 8 cut(s) | 319, 731, 804, 870, 924, 979, 1130, 1563 |
| HpaII | CCGG | 2 cut(s) | 770, 2256 |
| HphI | GGTGA | 2 cut(s) | 1022, 1093 |
| Hpy166II | GTNNAC | 6 cut(s) | 128, 141, 296, 964, 1063, 1453 |
| Hpy188I | TCNGA | 6 cut(s) | 318, 350, 904, 1073, 2226, 2233 |
| Hpy8I | GTNNAC | 6 cut(s) | 128, 141, 296, 964, 1063, 1453 |
| Hpy99I | CGWCG | 1 cut(s) | 23 |
| HpyAV | CCTTC | 9 cut(s) | 315, 321, 343, 403, 431, 656, 1759, 2183, 2418 |
| HpyCH4III | ACNGT | 3 cut(s) | 285, 1882, 1969 |
| HpyCH4IV | ACGT | 2 cut(s) | 1065, 1353 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 562, 745, 884, 893, 1865 |
| HpyF3I | CTNAG | 6 cut(s) | 366, 1142, 1238, 2230, 2270, 2393 |
| HpySE526I | ACGT | 2 cut(s) | 1065, 1353 |
| LmnI | GCTCC | 4 cut(s) | 553, 561, 829, 1303 |
| Lsp1109I | GCAGC | 5 cut(s) | 1351, 1732, 2286, 2302, 2305 |
| LweI | GCATC | 6 cut(s) | 874, 1468, 1877, 1975, 2224, 2400 |
| MaeI | CTAG | 7 cut(s) | 123, 582, 690, 845, 990, 2060, 2282 |
| MaeII | ACGT | 2 cut(s) | 1065, 1353 |
| MaeIII | GTNAC | 6 cut(s) | 1131, 1145, 1333, 1910, 2153, 2296 |
| MflI | RGATCY | 4 cut(s) | 944, 1514, 2037, 2226 |
| MhlI | GDGCHC | 5 cut(s) | 437, 558, 615, 898, 920 |
| MlsI | TGGCCA | 1 cut(s) | 1799 |
| MluNI | TGGCCA | 1 cut(s) | 1799 |
| MlyI | GAGTC | 3 cut(s) | 313, 740, 1139 |
| MmeI | TCCRAC | 2 cut(s) | 171, 1072 |
| Mox20I | TGGCCA | 1 cut(s) | 1799 |
| Mph1103I | ATGCAT | 2 cut(s) | 448, 957 |
| MroXI | GAANNNNTTC | 1 cut(s) | 382 |
| MscI | TGGCCA | 1 cut(s) | 1799 |
| MslI | CAYNNNNRTG | 4 cut(s) | 203, 403, 1556, 2013 |
| Msp20I | TGGCCA | 1 cut(s) | 1799 |
| MspA1I | CMGCKG | 2 cut(s) | 2315, 2407 |
| MspI | CCGG | 2 cut(s) | 770, 2256 |
| MspR9I | CCNGG | 6 cut(s) | 673, 1197, 1689, 1706, 2218, 2256 |
| Mva1269I | GAATGC | 1 cut(s) | 1162 |
| MvaI | CCWGG | 5 cut(s) | 673, 1197, 1689, 1706, 2218 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 562, 745, 884, 893, 1865 |
| NciI | CCSGG | 1 cut(s) | 2256 |
| NcoI | CCATGG | 1 cut(s) | 711 |
| NdeI | CATATG | 3 cut(s) | 880, 1190, 1474 |
| NlaIV | GGNNCC | 4 cut(s) | 831, 946, 1266, 1608 |
| NmuCI | GTSAC | 2 cut(s) | 1131, 2153 |
| NsiI | ATGCAT | 2 cut(s) | 448, 957 |
| NspI | RCATGY | 4 cut(s) | 1594, 1638, 2161, 2366 |
| NspV | TTCGAA | 1 cut(s) | 1359 |
| PaeR7I | CTCGAG | 1 cut(s) | 1216 |
| PagI | TCATGA | 2 cut(s) | 567, 1122 |
| PceI | AGGCCT | 2 cut(s) | 39, 2216 |
| PciI | ACATGT | 3 cut(s) | 1590, 1634, 2157 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1505 |
| PctI | GAATGC | 1 cut(s) | 1162 |
| PdmI | GAANNNNTTC | 1 cut(s) | 382 |
| PfeI | GAWTC | 5 cut(s) | 804, 870, 924, 979, 1563 |
| PfoI | TCCNGGA | 1 cut(s) | 1687 |
| PkrI | GCNGC | 5 cut(s) | 1366, 1722, 2276, 2317, 2320 |
| Ple19I | CGATCG | 1 cut(s) | 1815 |
| PleI | GAGTC | 3 cut(s) | 313, 739, 1138 |
| PpsI | GAGTC | 3 cut(s) | 313, 739, 1138 |
| PpuMI | RGGWCCY | 1 cut(s) | 2427 |
| PscI | ACATGT | 3 cut(s) | 1590, 1634, 2157 |
| PshBI | ATTAAT | 1 cut(s) | 57 |
| PsiI | TTATAA | 1 cut(s) | 1386 |
| Psp124BI | GAGCTC | 1 cut(s) | 558 |
| Psp5II | RGGWCCY | 1 cut(s) | 2427 |
| Psp6I | CCWGG | 5 cut(s) | 671, 1195, 1687, 1704, 2216 |
| PspFI | CCCAGC | 1 cut(s) | 748 |
| PspGI | CCWGG | 5 cut(s) | 671, 1195, 1687, 1704, 2216 |
| PspN4I | GGNNCC | 4 cut(s) | 831, 946, 1266, 1608 |
| PspPI | GGNCC | 2 cut(s) | 1943, 2427 |
| PspPPI | RGGWCCY | 1 cut(s) | 2427 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1318, 1350 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2318 |
| PsuI | RGATCY | 4 cut(s) | 944, 1514, 2037, 2226 |
| PvuI | CGATCG | 1 cut(s) | 1815 |
| PvuII | CAGCTG | 2 cut(s) | 2315, 2407 |
| RsaI | GTAC | 7 cut(s) | 24, 33, 282, 1392, 1439, 1572, 2260 |
| RsaNI | GTAC | 7 cut(s) | 23, 32, 281, 1391, 1438, 1571, 2259 |
| RseI | CAYNNNNRTG | 4 cut(s) | 203, 403, 1556, 2013 |
| SacI | GAGCTC | 1 cut(s) | 558 |
| SatI | GCNGC | 5 cut(s) | 1365, 1721, 2275, 2316, 2319 |
| Sau96I | GGNCC | 2 cut(s) | 1943, 2427 |
| ScaI | AGTACT | 1 cut(s) | 282 |
| SchI | GAGTC | 3 cut(s) | 313, 740, 1139 |
| ScrFI | CCNGG | 6 cut(s) | 673, 1197, 1689, 1706, 2218, 2256 |
| SduI | GDGCHC | 5 cut(s) | 437, 558, 615, 898, 920 |
| SfaNI | GCATC | 6 cut(s) | 874, 1468, 1877, 1975, 2224, 2400 |
| SfcI | CTRYAG | 1 cut(s) | 1466 |
| Sfr274I | CTCGAG | 1 cut(s) | 1216 |
| SfuI | TTCGAA | 1 cut(s) | 1359 |
| SinI | GGWCC | 1 cut(s) | 2427 |
| SlaI | CTCGAG | 1 cut(s) | 1216 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 203, 403, 1556, 2013 |
| SmlI | CTYRAG | 2 cut(s) | 1216, 1903 |
| SmoI | CTYRAG | 2 cut(s) | 1216, 1903 |
| SpeI | ACTAGT | 2 cut(s) | 122, 689 |
| SseBI | AGGCCT | 2 cut(s) | 39, 2216 |
| SspI | AATATT | 2 cut(s) | 109, 1737 |
| SspMI | CTAG | 7 cut(s) | 123, 582, 690, 845, 990, 2060, 2282 |
| SstI | GAGCTC | 1 cut(s) | 558 |
| StuI | AGGCCT | 2 cut(s) | 39, 2216 |
| StyD4I | CCNGG | 6 cut(s) | 671, 1195, 1687, 1704, 2216, 2254 |
| StyI | CCWWGG | 1 cut(s) | 711 |
| TaaI | ACNGT | 3 cut(s) | 285, 1882, 1969 |
| TaiI | ACGT | 2 cut(s) | 1068, 1356 |
| TaqI | TCGA | 8 cut(s) | 325, 1018, 1217, 1359, 1508, 1811, 2031, 2162 |
| TatI | WGTACW | 2 cut(s) | 280, 1390 |
| TfiI | GAWTC | 5 cut(s) | 804, 870, 924, 979, 1563 |
| TscAI | CASTG | 1 cut(s) | 2244 |
| TseFI | GTSAC | 2 cut(s) | 1131, 2153 |
| TseI | GCWGC | 5 cut(s) | 1364, 1720, 2274, 2315, 2318 |
| Tsp45I | GTSAC | 2 cut(s) | 1131, 2153 |
| TspGWI | ACGGA | 2 cut(s) | 1588, 2141 |
| TspRI | CASTG | 1 cut(s) | 2244 |
| VpaK11BI | GGWCC | 1 cut(s) | 2427 |
| VspI | ATTAAT | 1 cut(s) | 57 |
| XapI | RAATTY | 5 cut(s) | 697, 816, 1417, 1894, 2175 |
| XceI | RCATGY | 4 cut(s) | 1594, 1638, 2161, 2366 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1174 |
| XhoI | CTCGAG | 1 cut(s) | 1216 |
| XmiI | GTMKAC | 1 cut(s) | 127 |
| XmnI | GAANNNNTTC | 1 cut(s) | 382 |
| XspI | CTAG | 7 cut(s) | 123, 582, 690, 845, 990, 2060, 2282 |
| ZrmI | AGTACT | 1 cut(s) | 282 |
| Zsp2I | ATGCAT | 2 cut(s) | 448, 957 |