RchiOBHm_Chr1g0341851

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000294
Physical Location & Seq
Reverse (-)
33719980 .. 33724090
4111 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56853

Sequence Viewer

Length: 2574 bp
ATGGCTCAAATGTATGGAATTTCACTCTGCATATTATTTTGCTTCCTGGGTTGTGCTGAAGTTGATGAAAAAGTGCATTACAACAGTCCTAGTGTTGTGGACGAGGTTGACGTTGGTGTGATTCTTGATATGGGATCAAGGGAAGCAAAACTTGTTCTCAGTTGCATTTCAATGGCCCTGTCTGATTTCTACAATCTGCACAACAACTACAGCACAAGAGTAGTTCTCCACAGTAGGGATTCCCATGGAAAAGCTCTACATGCTCTATCAGCTGCTGTTAGTCTGTTGGATAACATCAAAGTGGAAGCAATAATTAGTGCAGAACCAAGAATGGAAGCAGACCTATTGGAAGAATTAGGAGGAGTTGAAGTCCCAGTATTGTCTCTGTCTCAACCTATTCCTTCTCCTCCTCTGACTCATAGATATCCCTTCTTCATTGAGATCAGACAGGATGAAACTTCTCAGGTTATGGGAATTGTTTCCCTTATTAAAACATACAAATGGAAGGATGTTATCCTTCTATATGAGAGCACAAAATATGCATACAACATCATTCCATCTTTGATTAGTTCTTTCCAAGAGAAAAATGTCTATATTTCATATAAGAGTTCCATATCTGCCTCCTCAACAAATCAACAAATCATTGAGGAGCTCCACAAGCTCATGATATTGAAGACTAGGATAATTTTGGTGCATATTTCCCATGTGCTCATGCCTCGCCTATTCTTAAATGCAAAAAGGTTAGGAATGATGAGAGAAGGGTATGCCTGGATTGTGACATCAACTAGTATGAATTTCTTGCAATCCATGGACTTATCTGTCATTGAGTCTATGCAAGGAGTTCTGGGTTTCAAGTCTTATATTCCGGCTTCAACCAACCTCCACAAACTTACTTCCAGAATCAGGAGAAAATTTTACATTGAGGAGCCTGATATGGAACTAGGTAGGGAGTTAAGTGCAGATGGAATCTGGGCATATGATGCAACTTGGGCTCTATCAGAAGCAGTTGAGAGGACAAGAATCAAAAGTTCTACTACTGGATCCTCCAAGCATGGAGTTGACCTTTTTAGAGGGATTCTGCAAACTAGATTTAAAGGGTTAAGTGGTGAAGTTCGATATCCAAATGGGAGCTTGATTTCAAGTGGATTTGAGATAGTGAACGTAATCGGAACAGGGGTCAGAAGAGTTGGATTTTGGCCTTATGAAGAAGAAAAAATCACGAAAGAGTCACTCCCACTTGGTAACAGAAGGAATGAACTTTCCACAAACCATCTGGAAACAATCATATGGCCTGGAGGATCATCAACCATCGTGAGAAGTTCCAAGAGGAGACTGAGTGGAATTAAACTAAAAGTTGGGGTTCCAGTAAAAATAGGGTTCAAGGAACTTGTGCGTGTGGAGCATGATCAACAAAGCAATAGAACTCATGTTACAGGCTTCTGTATAGACGTATTCGAAGCTGCAATTAGAGGATTGCCTTATAAAGTACATTATGAGTTTATTCCATTTGACGATTCCGTGTTAGTTGGGGGGTACAACGATCTAGTTCACAAGGTTTATCTACAGACATATGATGCTGTTGCTGGAGATATAACGATCACACAGAATAGATCTTTGTATGTTGATTTTACAATACCATTTACTGACATGGGTGTGGGAATCTTAGTACGGAATGAAAAGGAAAACAAGTGGGTTTTCTTGGAACCTCTGTCAGCAAATCTTTGGATGACAAGTGGTGGTTTTTTTATCCTAACGGGTTTTGTTGTGTGGATAATTGAGCGTCCTGTCAACCAAGAGTTCCAGGGATCAACATCGCAACAACTTGGAACAATATTCTGGTTCTCCTTCTCAACCCTTGTGTTTTCTCACAGGGAAAAGTTGTTGAACAACTTGGCCAAGTTTGTCACGATCGTCTGGGTTTTTGTAGTGCTTATATTGACATCCAGTTATACTGCAACTTTAGCATCAATGCTGACAGTTAAACAGATAAATTTAAACTCAAGAGGTAACAATATAGCTGACCTTGTGATTTTTGGAGGGCCGAAGCAGAAGTTGTATCATACAGTTGAACAATTTGCTGATGCTTTATCAAGAGGAAGTAAGCATGGTGGTGTTTCTGCTATCATCGAAGAGATCCCATACCTCAAAATCTTCCTAGCAAAGTATCCTGCTGACTACTCCATGATTAAACCCAAGTTAATTACCAATGGTTTTGGCTTTGTTTTTCCTAAAGGTTCTAAATTAGTCCGTGACATGTCGAGGCAAATTGAAATTTTAAGAGAAGAAGGAAAGCTTTTAGAGATGGAAAAGGCCTGGTTTCAGATCTCAGATGCAGTGAATAGTCCTAATCCCGGTACTCTTAACCTCAGCAGCTTTCTAGGTTTATTCCTTGTTACTGGCGTTTCTTCAGCTGCTGCTCTTATATTATTCTTCATTTTGTCCCTTAAAGATAGATGGCATGTCCTAAAGATAAGCACAGCTATATCCCTGAGTAGAGGACAGCTGATGCAACTTATAAGAAGGTCCTTTCTAACAAATTATCCAATGCAGATGAACACATCAATACACAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

857

Amino Acids

96.49

Weight (kDa)

8.92

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 36 - 369 2.5e-06 Periplasmic binding protein
ANF_receptor PF01094 53 - 390 2e-61 Receptor family ligand binding region
Lig_chan-Glu_bd PF10613 468 - 559 1.4e-09 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 474 - 774 2.2e-11 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 572 - 801 5.2e-29 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1482, 2516
AasI GACNNNNNNGTC 1 cut(s) 818
AclWI GGATC 6 cut(s) 142, 1035, 1048, 1306, 1813, 2128
AcoI YGGCCR 1 cut(s) 1893
AcsI RAATTY 5 cut(s) 18, 793, 911, 1990, 2271
AcuI CTGAAG 2 cut(s) 78, 2391
AfaI GTAC 4 cut(s) 1488, 1535, 1668, 2356
AfiI CCNNNNNNNGG 3 cut(s) 235, 903, 2351
AflIII ACRYGT 1 cut(s) 2253
AhlI ACTAGT 1 cut(s) 785
AjnI CCWGG 5 cut(s) 45, 767, 1291, 1800, 2312
Alw21I GWGCWC 3 cut(s) 533, 654, 711
Alw26I GTCTC 3 cut(s) 387, 393, 1324
AlwI GGATC 6 cut(s) 142, 1035, 1048, 1306, 1813, 2128
AlwNI CAGNNNCTG 2 cut(s) 275, 2414
AoxI GGCC 6 cut(s) 174, 1196, 1289, 1893, 2039, 2310
ApeKI GCWGC 5 cut(s) 272, 1460, 2370, 2411, 2414
ApoI RAATTY 5 cut(s) 18, 793, 911, 1990, 2271
Asp700I GAANNNNTTC 1 cut(s) 478
AspS9I GGNCC 3 cut(s) 175, 2039, 2523
AsuC2I CCSGG 1 cut(s) 2352
AsuHPI GGTGA 1 cut(s) 1118
AsuII TTCGAA 1 cut(s) 1455
AvaII GGWCC 1 cut(s) 2523
BalI TGGCCA 1 cut(s) 1895
BamHI GGATCC 1 cut(s) 1040
BanII GRGCYC 2 cut(s) 654, 994
BbsI GAAGAC 1 cut(s) 680
Bbv12I GWGCWC 3 cut(s) 533, 654, 711
BbvCI CCTCAGC 1 cut(s) 2366
BbvI GCAGC 5 cut(s) 259, 1447, 2382, 2398, 2401
BccI CCATC 6 cut(s) 565, 956, 1278, 1316, 2296, 2448
BciT130I CCWGG 5 cut(s) 47, 769, 1293, 1802, 2314
BciVI GTATCC 1 cut(s) 2175
BclI TGATCA 1 cut(s) 1405
BcnI CCSGG 1 cut(s) 2352
BcoDI GTCTC 3 cut(s) 387, 393, 1324
BcuI ACTAGT 1 cut(s) 785
BfaI CTAG 8 cut(s) 90, 678, 786, 941, 1086, 1544, 2156, 2378
BfmI CTRYAG 2 cut(s) 208, 1562
BfuI GTATCC 1 cut(s) 2175
BglII AGATCT 2 cut(s) 1610, 2322
BisI GCNGC 5 cut(s) 273, 1461, 2371, 2412, 2415
BlsI GCNGC 5 cut(s) 274, 1462, 2372, 2413, 2416
Bme1390I CCNGG 6 cut(s) 47, 769, 1293, 1802, 2314, 2352
Bme18I GGWCC 1 cut(s) 2523
BmgT120I GGNCC 3 cut(s) 175, 2039, 2523
BmiI GGNNCC 4 cut(s) 927, 1042, 1362, 1704
BmrFI CCNGG 6 cut(s) 47, 769, 1293, 1802, 2314, 2352
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 6 cut(s) 970, 1564, 1973, 2071, 2320, 2496
BmuI ACTGGG 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 680
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpmI CTGGAG 2 cut(s) 1314, 1605
Bpu10I CCTNAGC 1 cut(s) 2366
Bpu14I TTCGAA 1 cut(s) 1455
BpuEI CTTGAG 1 cut(s) 1984
BpuMI CCSGG 1 cut(s) 2352
BsaBI GATNNNNATC 1 cut(s) 1810
BsaJI CCNNGG 4 cut(s) 46, 244, 807, 1801
BsaXI ACNNNNNCTCC 4 cut(s) 354, 384, 1321, 1351
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 903, 2351
Bse1I ACTGG 5 cut(s) 374, 1042, 1364, 1944, 2401
Bse8I GATNNNNATC 1 cut(s) 1810
BseBI CCWGG 5 cut(s) 47, 769, 1293, 1802, 2314
BseDI CCNNGG 4 cut(s) 46, 244, 807, 1801
BseGI GGATG 4 cut(s) 457, 514, 1731, 1940
BseJI GATNNNNATC 1 cut(s) 1810
BseLI CCNNNNNNNGG 3 cut(s) 235, 903, 2351
BseMII CTCAG 6 cut(s) 172, 476, 1325, 2340, 2380, 2480
BseNI ACTGG 5 cut(s) 374, 1042, 1364, 1944, 2401
BseRI GAGGAG 7 cut(s) 375, 396, 399, 613, 662, 938, 1342
BseXI GCAGC 5 cut(s) 259, 1447, 2382, 2398, 2401
BsgI GTGCAG 3 cut(s) 182, 339, 978
Bsh1285I CGRYCG 1 cut(s) 1911
BshFI GGCC 6 cut(s) 176, 1198, 1291, 1895, 2041, 2312
BsiEI CGRYCG 1 cut(s) 1911
BsiHKAI GWGCWC 3 cut(s) 533, 654, 711
BsiSI CCGG 2 cut(s) 866, 2352
BslFI GGGAC 2 cut(s) 356, 2425
BslI CCNNNNNNNGG 3 cut(s) 235, 903, 2351
BsmAI GTCTC 3 cut(s) 387, 393, 1324
BsmFI GGGAC 2 cut(s) 356, 2425
BsnI GGCC 6 cut(s) 176, 1198, 1291, 1895, 2041, 2312
Bsp119I TTCGAA 1 cut(s) 1455
Bsp1286I GDGCHC 4 cut(s) 533, 654, 711, 994
Bsp19I CCATGG 2 cut(s) 244, 807
BspANI GGCC 6 cut(s) 176, 1198, 1291, 1895, 2041, 2312
BspCNI CTCAG 6 cut(s) 171, 475, 1326, 2339, 2379, 2481
BspHI TCATGA 1 cut(s) 663
BspLI GGNNCC 4 cut(s) 927, 1042, 1362, 1704
BspPI GGATC 6 cut(s) 142, 1035, 1048, 1306, 1813, 2128
BspT104I TTCGAA 1 cut(s) 1455
BsrI ACTGG 5 cut(s) 374, 1042, 1364, 1944, 2401
BssECI CCNNGG 4 cut(s) 46, 244, 807, 1801
BssT1I CCWWGG 2 cut(s) 244, 807
Bst2UI CCWGG 5 cut(s) 47, 769, 1293, 1802, 2314
Bst4CI ACNGT 4 cut(s) 86, 233, 1978, 2065
Bst6I CTCTTC 2 cut(s) 1177, 2124
BstAPI GCANNNNNTGC 1 cut(s) 980
BstBI TTCGAA 1 cut(s) 1455
BstDEI CTNAG 7 cut(s) 158, 462, 1334, 1663, 2326, 2366, 2489
BstDSI CCRYGG 2 cut(s) 244, 807
BstF5I GGATG 4 cut(s) 457, 514, 1731, 1940
BstMAI GTCTC 3 cut(s) 387, 393, 1324
BstMCI CGRYCG 1 cut(s) 1911
BstMWI GCNNNNNNNGC 7 cut(s) 260, 269, 658, 980, 989, 1399, 1961
BstNI CCWGG 5 cut(s) 47, 769, 1293, 1802, 2314
BstNSI RCATGY 3 cut(s) 263, 2257, 2462
BstSCI CCNGG 6 cut(s) 45, 767, 1291, 1800, 2312, 2350
BstSFI CTRYAG 2 cut(s) 208, 1562
BstV1I GCAGC 5 cut(s) 259, 1447, 2382, 2398, 2401
BstV2I GAAGAC 1 cut(s) 680
BstX2I RGATCY 4 cut(s) 1040, 1610, 2133, 2322
BstYI RGATCY 4 cut(s) 1040, 1610, 2133, 2322
BsuI GTATCC 1 cut(s) 2175
BsuRI GGCC 6 cut(s) 176, 1198, 1291, 1895, 2041, 2312
BtgI CCRYGG 2 cut(s) 244, 807
BtgZI GCGATG 1 cut(s) 1797
BtsCI GGATG 4 cut(s) 457, 514, 1731, 1940
BtsI GCAGTG 1 cut(s) 2340
BtsIMutI CAGTG 1 cut(s) 2340
CaiI CAGNNNCTG 2 cut(s) 275, 2414
CciI TCATGA 1 cut(s) 663
Cfr13I GGNCC 3 cut(s) 175, 2039, 2523
CseI GACGC 1 cut(s) 1769
Csp6I GTAC 4 cut(s) 1487, 1534, 1667, 2355
CviQI GTAC 4 cut(s) 1487, 1534, 1667, 2355
DdeI CTNAG 7 cut(s) 158, 462, 1334, 1663, 2326, 2366, 2489
DraI TTTAAA 2 cut(s) 1093, 1995
DrdI GACNNNNNNGTC 1 cut(s) 818
DseDI GACNNNNNNGTC 1 cut(s) 818
EaeI YGGCCR 1 cut(s) 1893
Eam1104I CTCTTC 2 cut(s) 1177, 2124
EarI CTCTTC 2 cut(s) 1177, 2124
Ecl136II GAGCTC 1 cut(s) 652
Eco130I CCWWGG 2 cut(s) 244, 807
Eco147I AGGCCT 1 cut(s) 2312
Eco24I GRGCYC 2 cut(s) 654, 994
Eco32I GATATC 2 cut(s) 425, 1118
Eco47I GGWCC 1 cut(s) 2523
Eco53kI GAGCTC 1 cut(s) 652
Eco57I CTGAAG 2 cut(s) 78, 2391
EcoICRI GAGCTC 1 cut(s) 652
EcoO109I RGGNCCY 1 cut(s) 2523
EcoRII CCWGG 5 cut(s) 45, 767, 1291, 1800, 2312
EcoRV GATATC 2 cut(s) 425, 1118
EcoT14I CCWWGG 2 cut(s) 244, 807
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 2 cut(s) 654, 994
ErhI CCWWGG 2 cut(s) 244, 807
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 2277, 2309
FaqI GGGAC 2 cut(s) 356, 2425
FauNDI CATATG 3 cut(s) 976, 1286, 1570
FbaI TGATCA 1 cut(s) 1405
Fnu4HI GCNGC 5 cut(s) 273, 1461, 2371, 2412, 2415
FokI GGATG 4 cut(s) 464, 521, 1738, 1927
FriOI GRGCYC 2 cut(s) 654, 994
Fsp4HI GCNGC 5 cut(s) 273, 1461, 2371, 2412, 2415
FspBI CTAG 8 cut(s) 90, 678, 786, 941, 1086, 1544, 2156, 2378
GluI GCNGC 5 cut(s) 273, 1461, 2371, 2412, 2415
GsuI CTGGAG 2 cut(s) 1314, 1605
HaeIII GGCC 6 cut(s) 176, 1198, 1291, 1895, 2041, 2312
HapII CCGG 2 cut(s) 866, 2352
HgaI GACGC 1 cut(s) 1769
HincII GTYRAC 3 cut(s) 109, 1060, 1789
HindII GTYRAC 3 cut(s) 109, 1060, 1789
HindIII AAGCTT 1 cut(s) 2291
HpaII CCGG 2 cut(s) 866, 2352
HphI GGTGA 1 cut(s) 1118
Hpy166II GTNNAC 6 cut(s) 100, 109, 1060, 1159, 1549, 1789
Hpy188I TCNGA 8 cut(s) 184, 414, 446, 1000, 1169, 1181, 2322, 2329
Hpy8I GTNNAC 6 cut(s) 100, 109, 1060, 1159, 1549, 1789
HpyAV CCTTC 9 cut(s) 411, 439, 499, 527, 752, 1242, 1855, 2279, 2514
HpyCH4III ACNGT 4 cut(s) 86, 233, 1978, 2065
HpyCH4IV ACGT 3 cut(s) 111, 1161, 1449
HpyF10VI GCNNNNNNNGC 7 cut(s) 260, 269, 658, 980, 989, 1399, 1961
HpyF3I CTNAG 7 cut(s) 158, 462, 1334, 1663, 2326, 2366, 2489
HpySE526I ACGT 3 cut(s) 111, 1161, 1449
Ksp22I TGATCA 1 cut(s) 1405
LmnI GCTCC 5 cut(s) 649, 657, 925, 1128, 1399
Lsp1109I GCAGC 5 cut(s) 259, 1447, 2382, 2398, 2401
LweI GCATC 6 cut(s) 970, 1564, 1973, 2071, 2320, 2496
MaeI CTAG 8 cut(s) 90, 678, 786, 941, 1086, 1544, 2156, 2378
MaeII ACGT 3 cut(s) 111, 1161, 1449
MaeIII GTNAC 8 cut(s) 775, 1227, 1241, 1429, 1903, 2006, 2249, 2392
MflI RGATCY 4 cut(s) 1040, 1610, 2133, 2322
MhlI GDGCHC 4 cut(s) 533, 654, 711, 994
MlsI TGGCCA 1 cut(s) 1895
MluNI TGGCCA 1 cut(s) 1895
MlyI GAGTC 3 cut(s) 409, 836, 1235
MmeI TCCRAC 2 cut(s) 267, 1168
Mox20I TGGCCA 1 cut(s) 1895
Mph1103I ATGCAT 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 478
MscI TGGCCA 1 cut(s) 1895
MslI CAYNNNNRTG 5 cut(s) 170, 299, 499, 1652, 2109
Msp20I TGGCCA 1 cut(s) 1895
MspA1I CMGCKG 3 cut(s) 272, 2411, 2503
MspI CCGG 2 cut(s) 866, 2352
MspR9I CCNGG 6 cut(s) 47, 769, 1293, 1802, 2314, 2352
MvaI CCWGG 5 cut(s) 47, 769, 1293, 1802, 2314
MwoI GCNNNNNNNGC 7 cut(s) 260, 269, 658, 980, 989, 1399, 1961
NciI CCSGG 1 cut(s) 2352
NcoI CCATGG 2 cut(s) 244, 807
NdeI CATATG 3 cut(s) 976, 1286, 1570
NlaIV GGNNCC 4 cut(s) 927, 1042, 1362, 1704
NmuCI GTSAC 4 cut(s) 775, 1227, 1903, 2249
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 3 cut(s) 263, 2257, 2462
NspV TTCGAA 1 cut(s) 1455
PagI TCATGA 1 cut(s) 663
PceI AGGCCT 1 cut(s) 2312
PciI ACATGT 1 cut(s) 2253
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 8 cut(s) 121, 239, 900, 966, 1020, 1075, 1514, 1659
PkrI GCNGC 5 cut(s) 274, 1462, 2372, 2413, 2416
Ple19I CGATCG 1 cut(s) 1911
PleI GAGTC 3 cut(s) 409, 835, 1234
PpsI GAGTC 3 cut(s) 409, 835, 1234
PpuMI RGGWCCY 1 cut(s) 2523
PscI ACATGT 1 cut(s) 2253
PsiI TTATAA 2 cut(s) 1482, 2516
Psp124BI GAGCTC 1 cut(s) 654
Psp5II RGGWCCY 1 cut(s) 2523
Psp6I CCWGG 5 cut(s) 45, 767, 1291, 1800, 2312
PspGI CCWGG 5 cut(s) 45, 767, 1291, 1800, 2312
PspN4I GGNNCC 4 cut(s) 927, 1042, 1362, 1704
PspPI GGNCC 3 cut(s) 175, 2039, 2523
PspPPI RGGWCCY 1 cut(s) 2523
PsrI GAACNNNNNNTAC 2 cut(s) 1414, 1446
PstNI CAGNNNCTG 2 cut(s) 275, 2414
PsuI RGATCY 4 cut(s) 1040, 1610, 2133, 2322
PvuI CGATCG 1 cut(s) 1911
PvuII CAGCTG 3 cut(s) 272, 2411, 2503
RsaI GTAC 4 cut(s) 1488, 1535, 1668, 2356
RsaNI GTAC 4 cut(s) 1487, 1534, 1667, 2355
RseI CAYNNNNRTG 5 cut(s) 170, 299, 499, 1652, 2109
SacI GAGCTC 1 cut(s) 654
SatI GCNGC 5 cut(s) 273, 1461, 2371, 2412, 2415
Sau96I GGNCC 3 cut(s) 175, 2039, 2523
SchI GAGTC 3 cut(s) 409, 836, 1235
ScrFI CCNGG 6 cut(s) 47, 769, 1293, 1802, 2314, 2352
SduI GDGCHC 4 cut(s) 533, 654, 711, 994
SfaNI GCATC 6 cut(s) 970, 1564, 1973, 2071, 2320, 2496
SfcI CTRYAG 2 cut(s) 208, 1562
SfuI TTCGAA 1 cut(s) 1455
SinI GGWCC 1 cut(s) 2523
SmiMI CAYNNNNRTG 5 cut(s) 170, 299, 499, 1652, 2109
SmlI CTYRAG 1 cut(s) 1999
SmoI CTYRAG 1 cut(s) 1999
SpeI ACTAGT 1 cut(s) 785
SseBI AGGCCT 1 cut(s) 2312
SspI AATATT 1 cut(s) 1833
SspMI CTAG 8 cut(s) 90, 678, 786, 941, 1086, 1544, 2156, 2378
SstI GAGCTC 1 cut(s) 654
StuI AGGCCT 1 cut(s) 2312
StyD4I CCNGG 6 cut(s) 45, 767, 1291, 1800, 2312, 2350
StyI CCWWGG 2 cut(s) 244, 807
TaaI ACNGT 4 cut(s) 86, 233, 1978, 2065
TaiI ACGT 3 cut(s) 114, 1164, 1452
TaqI TCGA 4 cut(s) 1114, 1455, 2127, 2258
TatI WGTACW 1 cut(s) 1486
TfiI GAWTC 8 cut(s) 121, 239, 900, 966, 1020, 1075, 1514, 1659
TscAI CASTG 1 cut(s) 2340
TseFI GTSAC 4 cut(s) 775, 1227, 1903, 2249
TseI GCWGC 5 cut(s) 272, 1460, 2370, 2411, 2414
Tsp45I GTSAC 4 cut(s) 775, 1227, 1903, 2249
TspGWI ACGGA 3 cut(s) 1507, 1684, 2237
TspRI CASTG 1 cut(s) 2340
VpaK11BI GGWCC 1 cut(s) 2523
XapI RAATTY 5 cut(s) 18, 793, 911, 1990, 2271
XceI RCATGY 3 cut(s) 263, 2257, 2462
XcmI CCANNNNNNNNNTGG 1 cut(s) 1270
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 8 cut(s) 90, 678, 786, 941, 1086, 1544, 2156, 2378
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.