Rh1BG137300

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
22936375 .. 22946086
9712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG137300.1

Sequence Viewer

Length: 1365 bp
ATGAATGCAAAGAAGCTAGGAATGATGAGTGAAGGGGTTAAAGGGTTAAGTGGTGAAATTCAATATCCAAAGCATAAACTAATTGCAGACAAACTTGAGATAGTAAATGTGATAGGAAAGGAGGAGAGAAGAATTGGAGTTTTGACTTTTGAAGAAGAAACACAGTCCCTTAAAAACAAAAGAAATTTACTTTCCACCAGTGATCTGGAAACTGTCATATGGCCTGGAGGATCATTAACCATTACGAAAGGTTCCAAGAAGAAATTAAGTGAAACAAAATTAAGAGTTGGTGTTCCCCCAAAGAGAGGGTTCGAGGAACTTGTGCATGTGAAACATGACTTCCAAACCAATAAAACATATTTCACAGGCTTCTGTATAGATGTGTTTGAAACTGCAATAGGAGGATTGCCCTATAAAGTTCAATATGAGTTTATTCCATTTGAGGATGCTAATGGACTTTTGGCTGGGACGTACAACAATCTTGTTTACCAGGTTTATCTCCAGAAATATGATGTTGTTGTTGGAGATACGACAAACACATCAAACATATCGTTATATGTTGATTTTACAGTACCATATTCTGACTTGGGCGTGGGAACGCTAGTAGCAAATGAAAAGGAAAACATGTGGATTTTCTTAAGACCTCTTTCAACAAACCTTTGGATGACAAGTGCTGGTTTCTTTATCCTAACTGGGTTTGTTGTGTGGGTAATTAAGCGTCATACAAACAAAGAATTCCAGGGCACACCATCACAGCAAATTGGAACAATATTCTGGTTCTCCTTTTCAACCCTTGTCTTTGCTCATATTAAACAAATGCAATTGAACGCCAGAGGGAACTACATAGGTTACCAGGGTAGTTCATCATTGGTTACTGCAAATGCTGTAGAGAACTTGAATTTCAAAAGGGCTAAACCATATAGTTTAGTTGAAGCATATGCTGATGCTTTGTCAAGAGGAAGCCAGCATGGTGGTGTTTCTGCTATTGTTGACGAGGTGCCATACATTAAGGTCTTCCTTGCAAAGTATTCTGAGGGCTACTCTATGATTAAAACCGAGTCTACTACCAATGGTTTTGGCTTGGGACTCTCAGGTGATATGGCAACTGTCAGGAATCTGAAAATCAAGACTGGCACTTGTAAACGCCTCGTTAGGGAGTTTCATTCTTATGAGAAAGAGGTTGAGAGAGAGGCTGCAAAAACGGCAGACATGAAGGGGAAAGGAGCTGATCCTTATGACCTCAAGCAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGATTCCCGATTGTCGAAAGCGCCTGGAGGCCTCACTAGCTGAGTTAAAAGGAACTTCGGTGGCGGATGCAAAGAGAGCTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

454

Amino Acids

50.68

Weight (kDa)

9.02

Isoelectric Point (pI)

26.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lig_chan-Glu_bd PF10613 112 - 204 2.9e-07 Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan PF00060 218 - 272 7e-10 Ligand-gated ion channel
TBCA PF02970 369 - 446 2.6e-26 Tubulin binding cofactor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 997
AccI GTMKAC 1 cut(s) 1061
AciI CCGC 1 cut(s) 1343
AclWI GGATC 2 cut(s) 238, 1223
AcsI RAATTY 4 cut(s) 57, 184, 734, 898
AfaI GTAC 2 cut(s) 473, 573
AfiI CCNNNNNNNGG 2 cut(s) 305, 1153
AflII CTTAAG 1 cut(s) 637
AflIII ACRYGT 1 cut(s) 624
AjnI CCWGG 5 cut(s) 223, 489, 738, 852, 1302
AluBI AGCT 4 cut(s) 16, 1226, 1319, 1358
AluI AGCT 4 cut(s) 16, 1226, 1319, 1358
AlwI GGATC 2 cut(s) 238, 1223
AoxI GGCC 2 cut(s) 221, 1308
ApeKI GCWGC 1 cut(s) 1193
ApoI RAATTY 4 cut(s) 57, 184, 734, 898
AspLEI GCGC 1 cut(s) 1302
AsuHPI GGTGA 2 cut(s) 65, 1106
BaeGI GKGCMC 1 cut(s) 746
BanI GGYRCC 1 cut(s) 997
BbsI GAAGAC 1 cut(s) 1006
BbvI GCAGC 1 cut(s) 1180
BccI CCATC 1 cut(s) 757
BceAI ACGGC 1 cut(s) 1218
BciT130I CCWGG 5 cut(s) 225, 491, 740, 854, 1304
BfaI CTAG 3 cut(s) 17, 602, 1316
BfmI CTRYAG 1 cut(s) 885
BfoI RGCGCY 1 cut(s) 1303
BfrI CTTAAG 1 cut(s) 637
BisI GCNGC 1 cut(s) 1194
BlsI GCNGC 1 cut(s) 1195
Bme1390I CCNGG 5 cut(s) 225, 491, 740, 854, 1304
BmiI GGNNCC 2 cut(s) 253, 999
BmrFI CCNGG 5 cut(s) 225, 491, 740, 854, 1304
BmrI ACTGGG 1 cut(s) 702
BmsI GCATC 3 cut(s) 436, 934, 1336
BmuI ACTGGG 1 cut(s) 702
BpiI GAAGAC 1 cut(s) 1006
BplI GAGNNNNNCTC 2 cut(s) 1025, 1057
BpmI CTGGAG 3 cut(s) 246, 485, 1325
BpuEI CTTGAG 2 cut(s) 116, 1226
BsaJI CCNNGG 2 cut(s) 739, 853
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 1153
Bse1I ACTGG 3 cut(s) 198, 697, 1135
BseBI CCWGG 5 cut(s) 225, 491, 740, 854, 1304
BseDI CCNNGG 2 cut(s) 739, 853
BseGI GGATG 4 cut(s) 451, 669, 1281, 1351
BseLI CCNNNNNNNGG 2 cut(s) 305, 1153
BseMII CTCAG 3 cut(s) 1023, 1104, 1311
BseNI ACTGG 3 cut(s) 198, 697, 1135
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 746
BseXI GCAGC 1 cut(s) 1180
BseYI CCCAGC 1 cut(s) 464
BshFI GGCC 2 cut(s) 223, 1310
BshNI GGYRCC 1 cut(s) 997
BslFI GGGAC 3 cut(s) 151, 481, 1098
BslI CCNNNNNNNGG 2 cut(s) 305, 1153
BsmFI GGGAC 3 cut(s) 151, 481, 1098
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 223, 1310
Bsp1286I GDGCHC 1 cut(s) 746
Bsp143I GATC 3 cut(s) 202, 230, 1228
BspACI CCGC 1 cut(s) 1343
BspANI GGCC 2 cut(s) 223, 1310
BspCNI CTCAG 3 cut(s) 1024, 1103, 1312
BspLI GGNNCC 2 cut(s) 253, 999
BspPI GGATC 2 cut(s) 238, 1223
BspT107I GGYRCC 1 cut(s) 997
BspTI CTTAAG 1 cut(s) 637
BsrI ACTGG 3 cut(s) 198, 697, 1135
BssECI CCNNGG 2 cut(s) 739, 853
BssMI GATC 3 cut(s) 202, 230, 1228
Bst2UI CCWGG 5 cut(s) 225, 491, 740, 854, 1304
Bst4CI ACNGT 4 cut(s) 165, 214, 571, 1108
BstAFI CTTAAG 1 cut(s) 637
BstC8I GCNNGC 2 cut(s) 965, 1263
BstDEI CTNAG 3 cut(s) 1032, 1090, 1320
BstEII GGTNACC 1 cut(s) 848
BstF5I GGATG 4 cut(s) 451, 669, 1281, 1351
BstH2I RGCGCY 1 cut(s) 1303
BstHHI GCGC 1 cut(s) 1302
BstKTI GATC 3 cut(s) 205, 233, 1231
BstMBI GATC 3 cut(s) 202, 230, 1228
BstMWI GCNNNNNNNGC 3 cut(s) 1202, 1316, 1355
BstNI CCWGG 5 cut(s) 225, 491, 740, 854, 1304
BstNSI RCATGY 2 cut(s) 329, 628
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 5 cut(s) 223, 489, 738, 852, 1302
BstSFI CTRYAG 1 cut(s) 885
BstSLI GKGCMC 1 cut(s) 746
BstV1I GCAGC 1 cut(s) 1180
BstV2I GAAGAC 1 cut(s) 1006
BstXI CCANNNNNNTGG 2 cut(s) 205, 971
BsuRI GGCC 2 cut(s) 223, 1310
BtsCI GGATG 4 cut(s) 451, 669, 1281, 1351
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 2 cut(s) 965, 1263
CfoI GCGC 1 cut(s) 1302
CseI GACGC 1 cut(s) 707
CsiI ACCWGGT 1 cut(s) 489
Csp6I GTAC 2 cut(s) 472, 572
CviAII CATG 5 cut(s) 326, 335, 625, 968, 1210
CviQI GTAC 2 cut(s) 472, 572
DdeI CTNAG 3 cut(s) 1032, 1090, 1320
DpnI GATC 3 cut(s) 204, 232, 1230
DpnII GATC 3 cut(s) 202, 230, 1228
EciI GGCGGA 1 cut(s) 1358
Eco147I AGGCCT 1 cut(s) 1310
Eco91I GGTNACC 1 cut(s) 848
EcoO65I GGTNACC 1 cut(s) 848
EcoRI GAATTC 1 cut(s) 734
EcoRII CCWGG 5 cut(s) 223, 489, 738, 852, 1302
FaeI CATG 5 cut(s) 329, 338, 628, 971, 1213
FaqI GGGAC 3 cut(s) 151, 481, 1098
FatI CATG 5 cut(s) 325, 334, 624, 967, 1209
FauNDI CATATG 2 cut(s) 218, 937
FblI GTMKAC 1 cut(s) 1061
Fnu4HI GCNGC 1 cut(s) 1194
FokI GGATG 4 cut(s) 458, 676, 1288, 1358
Fsp4HI GCNGC 1 cut(s) 1194
FspBI CTAG 3 cut(s) 17, 602, 1316
GlaI GCGC 1 cut(s) 1301
GluI GCNGC 1 cut(s) 1194
GsaI CCCAGC 1 cut(s) 468
GsuI CTGGAG 3 cut(s) 246, 485, 1325
HaeII RGCGCY 1 cut(s) 1303
HaeIII GGCC 2 cut(s) 223, 1310
HgaI GACGC 1 cut(s) 707
HhaI GCGC 1 cut(s) 1302
Hin1II CATG 5 cut(s) 329, 338, 628, 971, 1213
Hin6I GCGC 1 cut(s) 1300
HinP1I GCGC 1 cut(s) 1300
HincII GTYRAC 1 cut(s) 991
HindII GTYRAC 1 cut(s) 991
HinfI GANTC 5 cut(s) 1058, 1086, 1114, 1268, 1282
HphI GGTGA 2 cut(s) 65, 1106
Hpy166II GTNNAC 4 cut(s) 487, 991, 1062, 1142
Hpy188I TCNGA 3 cut(s) 583, 1033, 1119
Hpy188III TCNNGA 6 cut(s) 206, 502, 954, 1111, 1126, 1286
Hpy8I GTNNAC 4 cut(s) 487, 991, 1062, 1142
HpyAV CCTTC 2 cut(s) 26, 1207
HpyCH4III ACNGT 4 cut(s) 165, 214, 571, 1108
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 9 cut(s) 8, 86, 325, 395, 820, 878, 1022, 1196, 1349
HpyF10VI GCNNNNNNNGC 3 cut(s) 1202, 1316, 1355
HpyF3I CTNAG 3 cut(s) 1032, 1090, 1320
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 5 cut(s) 329, 338, 628, 971, 1213
HspAI GCGC 1 cut(s) 1300
Kzo9I GATC 3 cut(s) 202, 230, 1228
LmnI GCTCC 1 cut(s) 1223
Lsp1109I GCAGC 1 cut(s) 1180
LweI GCATC 3 cut(s) 436, 934, 1336
MabI ACCWGGT 1 cut(s) 489
MaeI CTAG 3 cut(s) 17, 602, 1316
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 2 cut(s) 848, 871
MalI GATC 3 cut(s) 204, 232, 1230
MboI GATC 3 cut(s) 202, 230, 1228
MboII GAAGA 5 cut(s) 141, 164, 167, 271, 1006
MfeI CAATTG 1 cut(s) 821
MhlI GDGCHC 1 cut(s) 746
MlyI GAGTC 2 cut(s) 1067, 1080
MmeI TCCRAC 1 cut(s) 502
MslI CAYNNNNRTG 2 cut(s) 972, 1167
MspCI CTTAAG 1 cut(s) 637
MspR9I CCNGG 5 cut(s) 225, 491, 740, 854, 1304
MunI CAATTG 1 cut(s) 821
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 5 cut(s) 225, 491, 740, 854, 1304
MwoI GCNNNNNNNGC 3 cut(s) 1202, 1316, 1355
NdeI CATATG 2 cut(s) 218, 937
NdeII GATC 3 cut(s) 202, 230, 1228
NlaIII CATG 5 cut(s) 329, 338, 628, 971, 1213
NlaIV GGNNCC 2 cut(s) 253, 999
NspI RCATGY 2 cut(s) 329, 628
PceI AGGCCT 1 cut(s) 1310
PciI ACATGT 1 cut(s) 624
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 1114, 1268, 1282
PkrI GCNGC 1 cut(s) 1195
PleI GAGTC 2 cut(s) 1066, 1080
PpsI GAGTC 2 cut(s) 1066, 1080
PscI ACATGT 1 cut(s) 624
Psp6I CCWGG 5 cut(s) 223, 489, 738, 852, 1302
PspEI GGTNACC 1 cut(s) 848
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 5 cut(s) 223, 489, 738, 852, 1302
PspN4I GGNNCC 2 cut(s) 253, 999
RsaI GTAC 2 cut(s) 473, 573
RsaNI GTAC 2 cut(s) 472, 572
RseI CAYNNNNRTG 2 cut(s) 972, 1167
SatI GCNGC 1 cut(s) 1194
Sau3AI GATC 3 cut(s) 202, 230, 1228
SchI GAGTC 2 cut(s) 1067, 1080
ScrFI CCNGG 5 cut(s) 225, 491, 740, 854, 1304
SduI GDGCHC 1 cut(s) 746
SexAI ACCWGGT 1 cut(s) 489
SfaNI GCATC 3 cut(s) 436, 934, 1336
SfcI CTRYAG 1 cut(s) 885
SmiMI CAYNNNNRTG 2 cut(s) 972, 1167
SmlI CTYRAG 3 cut(s) 95, 637, 1241
SmoI CTYRAG 3 cut(s) 95, 637, 1241
SseBI AGGCCT 1 cut(s) 1310
SsiI CCGC 1 cut(s) 1343
SspI AATATT 1 cut(s) 771
SspMI CTAG 3 cut(s) 17, 602, 1316
StuI AGGCCT 1 cut(s) 1310
StyD4I CCNGG 5 cut(s) 223, 489, 738, 852, 1302
TaaI ACNGT 4 cut(s) 165, 214, 571, 1108
TaiI ACGT 1 cut(s) 473
TaqI TCGA 2 cut(s) 312, 1294
TfiI GAWTC 3 cut(s) 1114, 1268, 1282
TscAI CASTG 1 cut(s) 205
TseI GCWGC 1 cut(s) 1193
TspDTI ATGAA 5 cut(s) 17, 627, 852, 1151, 1226
TspRI CASTG 1 cut(s) 205
Vha464I CTTAAG 1 cut(s) 637
XapI RAATTY 4 cut(s) 57, 184, 734, 898
XceI RCATGY 2 cut(s) 329, 628
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 1061
XspI CTAG 3 cut(s) 17, 602, 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.