Prupe.2G105300_v2.0.a1

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
16219070 .. 16220445
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G105300.1

Sequence Viewer

Length: 771 bp
ATGTCCATCACCTTCTCAACCCTTGTGTTTGCTCATAGGCAGAAGTTGTCAAACAATTTAGCAAAGTTTGTAGTGATCATATGGGTGTTTGCTGTGCTTATATTGACTTCCAGTTACACAGCAACTCTGACATCAATTATGACAGTTAACCAAATACGATTAAACTCAAGAGGGGACTATATAGGTTACCAATCAGGTTCATTCACCCAGGGAGTGGTAAAGAACTTGAATTTCAAAGGTCTTAAACCCTACAATTCGGTTGAAGAATATGCTCTCGCTTTATCAAGCGGAAGTAAGCATGGTGGTGTCTCTGCTATCGTTGACGAGGTTCCATTCATTAAGATCTTCCTTGCACACTATCCTACTGGCTACTCCATGATTAAACCCGAATCTAGCACCAATGGTTTTGGCTTTGTTTTCCCTAAAGGTTCGAAATTGGTCCATGATATGTCAATGCAAATTGAACAAATGAGAGAAAAGGGAAAGCTTATGGAGATGGAGAAGGTCTGGTTTGATAAGAGAACAATTCTCATGTTTGACAACACAACGAGTGATCCCAATACTCTAAACTTCCATACTTTTCGTGGTTTATTTCTCATTACTGGGGTATCTTCAGCTTTTGCTATTTTCATATTCATAATATTCCCACTCAAAGAAAAATGGTATGCCGTGAAGAAATTCAGATTTAAATATCAGGTTCGAGAAAAGCTGCAGCGTGTAAGGAAATTCTTCTCTCGCAAAGTTTCCAATGAAACCGAAGAAAACCAGTAG

Protein Analysis

257

Amino Acids

29.4

Weight (kDa)

9.85

Isoelectric Point (pI)

23.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 214
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 548
AcsI RAATTY 3 cut(s) 229, 677, 725
AcuI CTGAAG 1 cut(s) 597
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 4 cut(s) 229, 235, 263, 464
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 3 cut(s) 487, 617, 709
AluI AGCT 3 cut(s) 487, 617, 709
Alw26I GTCTC 1 cut(s) 313
AlwI GGATC 1 cut(s) 548
ApeKI GCWGC 2 cut(s) 709, 712
ApoI RAATTY 3 cut(s) 229, 677, 725
Asp700I GAANNNNTTC 2 cut(s) 677, 728
AspS9I GGNCC 1 cut(s) 439
AsuHPI GGTGA 1 cut(s) 196
AsuII TTCGAA 1 cut(s) 431
AvaII GGWCC 1 cut(s) 439
BaeI ACNNNNGTAYC 2 cut(s) 591, 624
BbvI GCAGC 2 cut(s) 696, 724
BccI CCATC 2 cut(s) 14, 490
BceAI ACGGC 1 cut(s) 653
BciT130I CCWGG 1 cut(s) 209
BclI TGATCA 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 710
BglII AGATCT 1 cut(s) 342
BisI GCNGC 2 cut(s) 710, 713
BlsI GCNGC 2 cut(s) 711, 714
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 439
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 1 cut(s) 209
BmrI ACTGGG 1 cut(s) 612
BmuI ACTGGG 1 cut(s) 612
Bpu14I TTCGAA 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 207, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 4 cut(s) 111, 370, 607, 766
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 207, 208
BseLI CCNNNNNNNGG 1 cut(s) 214
BseNI ACTGG 4 cut(s) 111, 370, 607, 766
BseXI GCAGC 2 cut(s) 696, 724
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 431
Bsp143I GATC 3 cut(s) 75, 342, 553
BspACI CCGC 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 330
BspMAI CTGCAG 1 cut(s) 714
BspPI GGATC 1 cut(s) 548
BspT104I TTCGAA 1 cut(s) 431
BsrI ACTGG 4 cut(s) 111, 370, 607, 766
BssECI CCNNGG 2 cut(s) 207, 208
BssMI GATC 3 cut(s) 75, 342, 553
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 1 cut(s) 145
BstBI TTCGAA 1 cut(s) 431
BstEII GGTNACC 1 cut(s) 185
BstKTI GATC 3 cut(s) 78, 345, 556
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 3 cut(s) 75, 342, 553
BstNI CCWGG 1 cut(s) 209
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 207
BstSFI CTRYAG 1 cut(s) 710
BstV1I GCAGC 2 cut(s) 696, 724
BstX2I RGATCY 1 cut(s) 342
BstYI RGATCY 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 439
CviAII CATG 4 cut(s) 299, 376, 443, 532
CviJI RGCY 5 cut(s) 369, 411, 487, 617, 709
CviKI_1 RGCY 5 cut(s) 369, 411, 487, 617, 709
DpnI GATC 3 cut(s) 77, 344, 555
DpnII GATC 3 cut(s) 75, 342, 553
DraI TTTAAA 1 cut(s) 688
Eco47I GGWCC 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 597
Eco91I GGTNACC 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 207
FaeI CATG 4 cut(s) 302, 379, 446, 535
FaqI GGGAC 1 cut(s) 188
FatI CATG 4 cut(s) 298, 375, 442, 531
FauNDI CATATG 1 cut(s) 80
FbaI TGATCA 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 710, 713
Fsp4HI GCNGC 2 cut(s) 710, 713
FspBI CTAG 1 cut(s) 393
GluI GCNGC 2 cut(s) 710, 713
Hin1II CATG 4 cut(s) 302, 379, 446, 535
HincII GTYRAC 2 cut(s) 148, 322
HindII GTYRAC 2 cut(s) 148, 322
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 1 cut(s) 389
HpaI GTTAAC 1 cut(s) 148
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 148, 322
Hpy188I TCNGA 2 cut(s) 129, 683
Hpy188III TCNNGA 2 cut(s) 168, 701
Hpy8I GTNNAC 2 cut(s) 148, 322
HpyAV CCTTC 2 cut(s) 22, 496
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 353, 457, 712
Hsp92II CATG 4 cut(s) 302, 379, 446, 535
Ksp22I TGATCA 1 cut(s) 75
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 3 cut(s) 75, 342, 553
LpnPI CCDG 8 cut(s) 124, 180, 194, 221, 351, 493, 588, 680
Lsp1109I GCAGC 2 cut(s) 696, 724
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 113, 185
MalI GATC 3 cut(s) 77, 344, 555
MboI GATC 3 cut(s) 75, 342, 553
MboII GAAGA 6 cut(s) 275, 337, 603, 685, 721, 770
MflI RGATCY 1 cut(s) 342
MluCI AATT 9 cut(s) 55, 135, 229, 253, 434, 459, 525, 677, 725
MnlI CCTC 2 cut(s) 164, 319
MroXI GAANNNNTTC 2 cut(s) 677, 728
MseI TTAA 6 cut(s) 147, 161, 243, 339, 381, 687
MslI CAYNNNNRTG 2 cut(s) 83, 303
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
NdeI CATATG 1 cut(s) 80
NdeII GATC 3 cut(s) 75, 342, 553
NlaIII CATG 4 cut(s) 302, 379, 446, 535
NlaIV GGNNCC 1 cut(s) 330
NspV TTCGAA 1 cut(s) 431
PasI CCCWGGG 1 cut(s) 208
PdmI GAANNNNTTC 2 cut(s) 677, 728
PfeI GAWTC 1 cut(s) 389
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 2 cut(s) 711, 714
Psp6I CCWGG 1 cut(s) 207
PspEI GGTNACC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 439
PstI CTGCAG 1 cut(s) 714
PsuI RGATCY 1 cut(s) 342
RseI CAYNNNNRTG 2 cut(s) 83, 303
SaqAI TTAA 6 cut(s) 147, 161, 243, 339, 381, 687
SatI GCNGC 2 cut(s) 710, 713
Sau3AI GATC 3 cut(s) 75, 342, 553
Sau96I GGNCC 1 cut(s) 439
ScrFI CCNGG 1 cut(s) 209
SfcI CTRYAG 1 cut(s) 710
SfuI TTCGAA 1 cut(s) 431
SinI GGWCC 1 cut(s) 439
SmiI ATTTAAAT 1 cut(s) 688
SmiMI CAYNNNNRTG 2 cut(s) 83, 303
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 9 cut(s) 55, 135, 229, 253, 434, 459, 525, 677, 725
SsiI CCGC 1 cut(s) 288
SspI AATATT 1 cut(s) 642
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 207
SwaI ATTTAAAT 1 cut(s) 688
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 431, 700
TasI AATT 9 cut(s) 55, 135, 229, 253, 434, 459, 525, 677, 725
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 6 cut(s) 147, 161, 243, 339, 381, 687
Tru9I TTAA 6 cut(s) 147, 161, 243, 339, 381, 687
TseI GCWGC 2 cut(s) 709, 712
TspDTI ATGAA 5 cut(s) 189, 325, 619, 625, 765
Van91I CCANNNNNTGG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 439
XapI RAATTY 3 cut(s) 229, 677, 725
XcmI CCANNNNNNNNNTGG 1 cut(s) 581
XmnI GAANNNNTTC 2 cut(s) 677, 728
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.