Rmu_sc0004658.1_g000002

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004658.1
OG0000294
Physical Location & Seq
Forward (+)
3555 .. 4253
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004658.1_g000002.1.cds

Sequence Viewer

Length: 699 bp
atgcaaggagtgttgggtttcaagtcttctattccagcatcaacaaaccttcacagtcttacaacaagattgaggaggaagttttacatggaggatccaaatatggaagcaattcaggagttaagtgcggatgggatctgggcatatgatgcaacttgggctctagcagaagcagttcaaagagcaaggcttaaaacttctaccactagatcctcaaaagatggaactgtgcttcttagagggattttgcagactagatttaaaagtttaagtggtgaaattcaatatgtgaatgggaaactgattccatcagaaccatttgagatagttaatgttattggaaaaggtgagatcagaaggatcggatttaggccttgcaaagaagaagtaaaatccggaaaagggtcaccccagcagcaacttattcataatgggagaaatttagcttctacaattgatcttgaaagaatcatatggcctggaggttccaggagggaattgagtagtagtgaaacaattaaactaagaattggtgttccaatgagattcgggttcaaggaacctgttcgtgtcgagcatgatcttgaaaccaatataactcatgtcactgccttctctatagatgtattcaaagatgtgataggagctttgccgtatgaagggcagtacgagtttattccatttgaggatgccagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

232

Amino Acids

26.04

Weight (kDa)

8.96

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 395
AciI CCGC 1 cut(s) 128
AclWI GGATC 5 cut(s) 89, 102, 143, 204, 368
AcsI RAATTY 2 cut(s) 279, 439
AfaI GTAC 1 cut(s) 668
AfiI CCNNNNNNNGG 2 cut(s) 402, 659
AgsI TTSAA 7 cut(s) 22, 179, 284, 464, 556, 587, 631
AjnI CCWGG 2 cut(s) 478, 488
AluBI AGCT 2 cut(s) 446, 647
AluI AGCT 2 cut(s) 446, 647
AlwI GGATC 5 cut(s) 89, 102, 143, 204, 368
Aor13HI TCCGGA 1 cut(s) 395
AoxI GGCC 2 cut(s) 371, 476
ApeKI GCWGC 1 cut(s) 415
ApoI RAATTY 2 cut(s) 279, 439
Asp700I GAANNNNTTC 3 cut(s) 111, 174, 564
AsuHPI GGTGA 3 cut(s) 287, 359, 399
BamHI GGATCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 427
BccI CCATC 3 cut(s) 125, 215, 316
BceAI ACGGC 1 cut(s) 637
BciT130I CCWGG 2 cut(s) 480, 490
BfaI CTAG 3 cut(s) 164, 207, 255
BfmI CTRYAG 1 cut(s) 618
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
Bme1390I CCNGG 2 cut(s) 480, 490
BmiI GGNNCC 3 cut(s) 96, 487, 561
BmrFI CCNGG 2 cut(s) 480, 490
BmsI GCATC 3 cut(s) 47, 139, 679
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 501
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 2 cut(s) 402, 659
Bse1I ACTGG 1 cut(s) 693
BseAI TCCGGA 1 cut(s) 395
BseBI CCWGG 2 cut(s) 480, 490
BseGI GGATG 2 cut(s) 136, 694
BseLI CCNNNNNNNGG 2 cut(s) 402, 659
BseNI ACTGG 1 cut(s) 693
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 427
BseYI CCCAGC 1 cut(s) 411
BshFI GGCC 2 cut(s) 373, 478
BsiSI CCGG 1 cut(s) 396
BslI CCNNNNNNNGG 2 cut(s) 402, 659
BsnI GGCC 2 cut(s) 373, 478
Bsp1286I GDGCHC 1 cut(s) 163
Bsp13I TCCGGA 1 cut(s) 395
Bsp143I GATC 7 cut(s) 94, 135, 209, 351, 360, 457, 580
BspACI CCGC 1 cut(s) 128
BspANI GGCC 2 cut(s) 373, 478
BspEI TCCGGA 1 cut(s) 395
BspLI GGNNCC 3 cut(s) 96, 487, 561
BspPI GGATC 5 cut(s) 89, 102, 143, 204, 368
BsrI ACTGG 1 cut(s) 693
BssMI GATC 7 cut(s) 94, 135, 209, 351, 360, 457, 580
Bst2UI CCWGG 2 cut(s) 480, 490
Bst4CI ACNGT 2 cut(s) 56, 229
BstAPI GCANNNNNTGC 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 236, 524
BstEII GGTNACC 1 cut(s) 405
BstF5I GGATG 2 cut(s) 136, 694
BstKTI GATC 7 cut(s) 97, 138, 212, 354, 363, 460, 583
BstMBI GATC 7 cut(s) 94, 135, 209, 351, 360, 457, 580
BstMWI GCNNNNNNNGC 2 cut(s) 149, 158
BstNI CCWGG 2 cut(s) 480, 490
BstPI GGTNACC 1 cut(s) 405
BstSCI CCNGG 2 cut(s) 478, 488
BstSFI CTRYAG 1 cut(s) 618
BstV1I GCAGC 1 cut(s) 427
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 3 cut(s) 94, 135, 209
BstYI RGATCY 3 cut(s) 94, 135, 209
BsuRI GGCC 2 cut(s) 373, 478
BtsCI GGATG 2 cut(s) 136, 694
BtsI GCAGTG 1 cut(s) 606
BtsIMutI CAGTG 1 cut(s) 606
Csp6I GTAC 1 cut(s) 667
CviAII CATG 3 cut(s) 88, 578, 602
CviJI RGCY 6 cut(s) 161, 190, 373, 446, 478, 647
CviKI_1 RGCY 6 cut(s) 161, 190, 373, 446, 478, 647
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 2 cut(s) 236, 524
DpnI GATC 7 cut(s) 96, 137, 211, 353, 362, 459, 582
DpnII GATC 7 cut(s) 94, 135, 209, 351, 360, 457, 580
DraI TTTAAA 1 cut(s) 262
Eco147I AGGCCT 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 163
Eco91I GGTNACC 1 cut(s) 405
EcoO65I GGTNACC 1 cut(s) 405
EcoRII CCWGG 2 cut(s) 478, 488
EcoT38I GRGCYC 1 cut(s) 163
FaeI CATG 3 cut(s) 91, 581, 605
FatI CATG 3 cut(s) 87, 577, 601
FauNDI CATATG 2 cut(s) 145, 473
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 3 cut(s) 164, 207, 255
GluI GCNGC 1 cut(s) 416
GsaI CCCAGC 1 cut(s) 415
GsuI CTGGAG 1 cut(s) 501
HaeIII GGCC 2 cut(s) 373, 478
HapII CCGG 1 cut(s) 396
Hin1II CATG 3 cut(s) 91, 581, 605
HinfI GANTC 3 cut(s) 304, 468, 546
HpaII CCGG 1 cut(s) 396
HphI GGTGA 3 cut(s) 287, 359, 399
Hpy188I TCNGA 3 cut(s) 313, 356, 365
Hpy188III TCNNGA 4 cut(s) 116, 396, 461, 584
HpyAV CCTTC 4 cut(s) 59, 351, 622, 653
HpyCH4III ACNGT 2 cut(s) 56, 229
HpyCH4V TGCA 4 cut(s) 4, 152, 250, 378
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 158
HpyF3I CTNAG 2 cut(s) 236, 524
Hsp92II CATG 3 cut(s) 91, 581, 605
Kpn2I TCCGGA 1 cut(s) 395
Kzo9I GATC 7 cut(s) 94, 135, 209, 351, 360, 457, 580
LmnI GCTCC 1 cut(s) 644
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 3 cut(s) 47, 139, 679
MaeI CTAG 3 cut(s) 164, 207, 255
MaeIII GTNAC 2 cut(s) 405, 604
MalI GATC 7 cut(s) 96, 137, 211, 353, 362, 459, 582
MboI GATC 7 cut(s) 94, 135, 209, 351, 360, 457, 580
MboII GAAGA 2 cut(s) 18, 395
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 3 cut(s) 94, 135, 209
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 7 cut(s) 111, 279, 439, 453, 497, 516, 528
MnlI CCTC 8 cut(s) 66, 69, 85, 223, 233, 476, 486, 679
MroI TCCGGA 1 cut(s) 395
MroXI GAANNNNTTC 3 cut(s) 111, 174, 564
MseI TTAA 6 cut(s) 122, 192, 261, 269, 330, 519
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 2 cut(s) 480, 490
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 2 cut(s) 480, 490
MwoI GCNNNNNNNGC 2 cut(s) 149, 158
NdeI CATATG 2 cut(s) 145, 473
NdeII GATC 7 cut(s) 94, 135, 209, 351, 360, 457, 580
NlaIII CATG 3 cut(s) 91, 581, 605
NlaIV GGNNCC 3 cut(s) 96, 487, 561
NmuCI GTSAC 2 cut(s) 405, 604
PceI AGGCCT 1 cut(s) 373
PdmI GAANNNNTTC 3 cut(s) 111, 174, 564
PfeI GAWTC 3 cut(s) 304, 468, 546
PfoI TCCNGGA 1 cut(s) 488
PkrI GCNGC 1 cut(s) 417
Psp6I CCWGG 2 cut(s) 478, 488
PspEI GGTNACC 1 cut(s) 405
PspFI CCCAGC 1 cut(s) 411
PspGI CCWGG 2 cut(s) 478, 488
PspN4I GGNNCC 3 cut(s) 96, 487, 561
PsuI RGATCY 3 cut(s) 94, 135, 209
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
SaqAI TTAA 6 cut(s) 122, 192, 261, 269, 330, 519
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 7 cut(s) 94, 135, 209, 351, 360, 457, 580
ScrFI CCNGG 2 cut(s) 480, 490
SduI GDGCHC 1 cut(s) 163
SetI ASST 6 cut(s) 51, 349, 448, 487, 565, 649
SfaNI GCATC 3 cut(s) 47, 139, 679
SfcI CTRYAG 1 cut(s) 618
Sse9I AATT 7 cut(s) 111, 279, 439, 453, 497, 516, 528
SseBI AGGCCT 1 cut(s) 373
SsiI CCGC 1 cut(s) 128
SspMI CTAG 3 cut(s) 164, 207, 255
StuI AGGCCT 1 cut(s) 373
StyD4I CCNGG 2 cut(s) 478, 488
TaaI ACNGT 2 cut(s) 56, 229
TaqI TCGA 1 cut(s) 573
TasI AATT 7 cut(s) 111, 279, 439, 453, 497, 516, 528
TfiI GAWTC 3 cut(s) 304, 468, 546
Tru1I TTAA 6 cut(s) 122, 192, 261, 269, 330, 519
Tru9I TTAA 6 cut(s) 122, 192, 261, 269, 330, 519
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 2 cut(s) 405, 604
TseI GCWGC 1 cut(s) 415
Tsp45I GTSAC 2 cut(s) 405, 604
TspDTI ATGAA 2 cut(s) 416, 672
TspRI CASTG 1 cut(s) 613
XapI RAATTY 2 cut(s) 279, 439
XmnI GAANNNNTTC 3 cut(s) 111, 174, 564
XspI CTAG 3 cut(s) 164, 207, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.