Rh1AG169100

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000294
Physical Location & Seq
Forward (+)
32175168 .. 32176101
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG169100.1

Sequence Viewer

Length: 612 bp
ATGTATGGAATTTCACTCTGCATATTATTTTGCTTCCTGGCTCTCTTGTGTGCTGAAGTTGATGAAAAAGTGCATTACAACAGTCCTAGTGTTGTGGACGAGGTTGACGTTGGTGTGATTCTTGATATGGGATCAAGGGAAGCAAAACTTGTTCTCAGTTGCATTTCAATGGCCCTGTCTGATTTCTACAATCTGCACAACAACTACAGCACAAGAGTAGTTCTCCACAGTAGGGATTCCCATGGAAAAGCTCTACATGCTCTATCAGCTGCTGTTAGTCTGTTGGATAACATCAAAGTGGAAGTAATAATTAGTGCAGAACCAAGAATGGAAGCAGACCTATTGGAAGAATTAGGAGGAGTTGAAGTCCCAGTATTGTCTCTGTCTCAACCTATTCCTTCTCCTCCTCTGGCTCATAGATACCCCTTCTTCATTGAGATCAGACAGGATGAAACTTCTCAGGTTATGGGAATTGTTTCCCTTATTAAAACATACGAATGGAAGGATGTTATCCTTCTATATGAGAGCACAAAATATGCATACAACATCATTCCATCTTTGATTAGTTCTTTCCAAGAGAAAATGTCTATATTTCATATAAGAGTTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

203

Amino Acids

22.75

Weight (kDa)

5.07

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 52 - 195 1.2e-19 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 139
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 2 cut(s) 168, 365
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 2 cut(s) 251, 269
AluI AGCT 2 cut(s) 251, 269
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 2 cut(s) 384, 390
AlwI GGATC 1 cut(s) 139
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 475
AspS9I GGNCC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 562
BciT130I CCWGG 1 cut(s) 38
BcoDI GTCTC 2 cut(s) 384, 390
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 205
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 365
BmuI ACTGGG 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 207, 239
BsaJI CCNNGG 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 2 cut(s) 454, 511
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 169, 473
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 3 cut(s) 372, 393, 396
BseXI GCAGC 1 cut(s) 256
BsgI GTGCAG 2 cut(s) 179, 336
BshFI GGCC 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 530
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 2 cut(s) 384, 390
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 2 cut(s) 131, 438
Bsp19I CCATGG 1 cut(s) 241
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 2 cut(s) 168, 472
BspPI GGATC 1 cut(s) 139
BsrI ACTGG 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 2 cut(s) 131, 438
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 83, 230
BstDEI CTNAG 2 cut(s) 155, 459
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 2 cut(s) 454, 511
BstKTI GATC 2 cut(s) 134, 441
BstMAI GTCTC 2 cut(s) 384, 390
BstMBI GATC 2 cut(s) 131, 438
BstMWI GCNNNNNNNGC 2 cut(s) 257, 266
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 2 cut(s) 454, 511
CaiI CAGNNNCTG 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 172
CviAII CATG 2 cut(s) 242, 257
CviJI RGCY 5 cut(s) 41, 173, 251, 269, 413
CviKI_1 RGCY 5 cut(s) 41, 173, 251, 269, 413
DdeI CTNAG 2 cut(s) 155, 459
DpnI GATC 2 cut(s) 133, 440
DpnII GATC 2 cut(s) 131, 438
Eco130I CCWWGG 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 241
EcoT22I ATGCAT 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 2 cut(s) 245, 260
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 1 cut(s) 353
FatI CATG 2 cut(s) 241, 256
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 2 cut(s) 461, 518
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 1 cut(s) 87
GluI GCNGC 1 cut(s) 270
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 2 cut(s) 245, 260
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 2 cut(s) 118, 236
Hpy166II GTNNAC 2 cut(s) 97, 106
Hpy188I TCNGA 2 cut(s) 181, 443
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 97, 106
HpyAV CCTTC 4 cut(s) 408, 436, 496, 524
HpyCH4III ACNGT 2 cut(s) 83, 230
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 6 cut(s) 21, 73, 162, 196, 317, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 266
HpyF3I CTNAG 2 cut(s) 155, 459
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 2 cut(s) 245, 260
Kzo9I GATC 2 cut(s) 131, 438
LpnPI CCDG 7 cut(s) 23, 50, 188, 384, 395, 431, 446
Lsp1109I GCAGC 1 cut(s) 256
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 108
MalI GATC 2 cut(s) 133, 440
MboI GATC 2 cut(s) 131, 438
MboII GAAGA 2 cut(s) 359, 421
MhlI GDGCHC 1 cut(s) 530
MluCI AATT 4 cut(s) 9, 309, 350, 471
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 4 cut(s) 94, 350, 414, 417
Mph1103I ATGCAT 1 cut(s) 541
MroXI GAANNNNTTC 1 cut(s) 475
MseI TTAA 1 cut(s) 486
MslI CAYNNNNRTG 3 cut(s) 167, 296, 496
MspA1I CMGCKG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 257, 266
NcoI CCATGG 1 cut(s) 241
NdeII GATC 2 cut(s) 131, 438
NlaIII CATG 2 cut(s) 245, 260
NsiI ATGCAT 1 cut(s) 541
NspI RCATGY 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 475
PfeI GAWTC 2 cut(s) 118, 236
PkrI GCNGC 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspPI GGNCC 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 269
RseI CAYNNNNRTG 3 cut(s) 167, 296, 496
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 2 cut(s) 131, 438
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 530
SetI ASST 7 cut(s) 105, 111, 253, 271, 342, 394, 465
SfcI CTRYAG 1 cut(s) 205
SmiMI CAYNNNNRTG 3 cut(s) 167, 296, 496
Sse9I AATT 4 cut(s) 9, 309, 350, 471
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 83, 230
TaiI ACGT 1 cut(s) 111
TasI AATT 4 cut(s) 9, 309, 350, 471
TfiI GAWTC 2 cut(s) 118, 236
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 4 cut(s) 78, 421, 465, 584
XapI RAATTY 1 cut(s) 9
XceI RCATGY 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 475
XspI CTAG 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.