Rh1BG132800

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000294
Physical Location & Seq
Forward (+)
22250471 .. 22252159
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG132800.1

Sequence Viewer

Length: 1347 bp
ATGGAGTGTCGAGGGTTGAGGCAAGCAGTCATCCTGTCCTTTGTGACCTTCTGTTGCCTCATTGGTCGCTTAAGTGCTGATATTGAGAAGTTAAACTATGATGTTGATTCTATTATGGTTGAAGATCGGGTTCATGTTGGTGTGATTCTCGATATGGAATCAAAAGGAAAGATTGTTCTCAGCTGCATTTCAATGGCCCTCTCTGATTTTTACCATCTCCACAATAACTACAGCACAAGAATAGTTGTCTACAGTAAGGATTCCAAAGGTGAACCTCTGCCTGCTCTGTCAGCTGCTCTTGACTTTTTGGAAAATATCAAAGTGGAAGCAATAATTGGTGCACCAAAAAGAGCAGAAGCAAACCTTCTGGCAGAATTAGGAGAAGCGGCCAAAATCCCTTTAATGTCTCTTTCTCCTGCTCGGACTGATAATAAATATCCCTTCTTTGTTGAGATCATGCGTGCTGATGAAGCGGGTGAAGTTAAGGGAATTAGTGCCATTATTGAAGTTTTCAAATGGAGGGATGTCATCCTTTTATATGATAGCAAAGAATATGAGAGAGACTTCATTCCATCATTGGTCAAGTCATTCCAAGAGATCACACATGGGAGTGTTGCGTACAAAAGTTCCAATATTGCTTCCTCCTCATCAAATGAAGAAATCACTGCAGAGCTCCAAAAGTTGATCAACCTGAAGATTAAGGTATTTGTGGTGCATGTGTCACATTTTTTTGCACCTCGTCTTTTCTTGAATGCAAAGAAGTTAGGGATGATGAGCGAAGGGTATGCTTGGATCATGACATCAACTAGCATGAATTTCTTGCATTCTATGAATTTCTCTGTTATTGAGTCAATGCAAGGAGTGCTGGGTTTCAAGTCTTCTATTCCAGCATCAATAAACCTTCACAGTCTTACATCAAGATTGAGGAGGAAGTTTTACATGGAGGATCCAAATATGGAAGCAATTCGGGAGTTAAGTGCAGATGGGATCTGGGCATATGATGCAACTTGGGCTCTAGCAGAAGCAGTTGAAAGAGCAAGGCTTAAAAATTCTACCACTAGATCCTCCAAAGATGGAGCTGTGCTTCTTAAAGAGATATTGCAGACCAGATTCAAAGGTTTAAGTGGTGAAATTCAATATGTGAATGGGAAACTGATTCCATCAGAACCATTTGAGATAGTTAATGTTATTGGAAAAGGTGAGATCAAAAGGATTGGATTTTGGCCTTGCAAAGAAGAAGTAAAATCCGGAAAAGGGTCACCCCAGCAGCAACTCATTCATAATGGGAGAAATTTAGCTTCTATCTTGAAAGAATCATATGGCCTGGAGGTTCCAGGAGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

448

Amino Acids

49.96

Weight (kDa)

7.12

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 44 - 396 1.3e-14 Periplasmic binding protein
ANF_receptor PF01094 61 - 397 1.6e-60 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AccIII TCCGGA 1 cut(s) 1247
AciI CCGC 2 cut(s) 386, 473
AclWI GGATC 5 cut(s) 800, 941, 954, 995, 1056
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 5 cut(s) 814, 832, 1048, 1131, 1291
AcuI CTGAAG 1 cut(s) 713
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 1 cut(s) 1254
AflII CTTAAG 1 cut(s) 70
AjnI CCWGG 2 cut(s) 1323, 1333
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AloI GAACNNNNNNTCC 2 cut(s) 159, 191
AluBI AGCT 5 cut(s) 183, 293, 673, 1079, 1298
AluI AGCT 5 cut(s) 183, 293, 673, 1079, 1298
Alw21I GWGCWC 2 cut(s) 343, 675
Alw26I GTCTC 2 cut(s) 411, 555
Alw44I GTGCAC 1 cut(s) 339
AlwI GGATC 5 cut(s) 800, 941, 954, 995, 1056
Aor13HI TCCGGA 1 cut(s) 1247
AoxI GGCC 4 cut(s) 195, 387, 1223, 1321
ApaLI GTGCAC 1 cut(s) 339
ApeKI GCWGC 3 cut(s) 183, 293, 1267
ApoI RAATTY 5 cut(s) 814, 832, 1048, 1131, 1291
Asp700I GAANNNNTTC 1 cut(s) 963
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 5 cut(s) 281, 488, 1139, 1211, 1251
BaeGI GKGCMC 1 cut(s) 343
BamHI GGATCC 1 cut(s) 946
BanII GRGCYC 2 cut(s) 675, 1015
BbsI GAAGAC 1 cut(s) 870
Bbv12I GWGCWC 2 cut(s) 343, 675
BbvI GCAGC 3 cut(s) 170, 280, 1279
BccI CCATC 5 cut(s) 222, 580, 977, 1067, 1168
BcgI CGANNNNNNTGC 2 cut(s) 767, 801
BciT130I CCWGG 2 cut(s) 1325, 1335
BclI TGATCA 1 cut(s) 684
BcoDI GTCTC 2 cut(s) 411, 555
BfaI CTAG 3 cut(s) 807, 1016, 1059
BfmI CTRYAG 3 cut(s) 229, 250, 666
BfrI CTTAAG 1 cut(s) 70
BisI GCNGC 4 cut(s) 184, 294, 387, 1268
BlsI GCNGC 4 cut(s) 185, 295, 388, 1269
Bme1390I CCNGG 2 cut(s) 1325, 1335
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 948, 1332
BmrFI CCNGG 2 cut(s) 1325, 1335
BmsI GCATC 2 cut(s) 899, 991
BpiI GAAGAC 1 cut(s) 870
BpmI CTGGAG 1 cut(s) 1346
BsaWI WCCGGW 1 cut(s) 1247
Bsc4I CCNNNNNNNGG 1 cut(s) 1254
BseAI TCCGGA 1 cut(s) 1247
BseBI CCWGG 2 cut(s) 1325, 1335
BseGI GGATG 4 cut(s) 30, 528, 529, 774
BseLI CCNNNNNNNGG 1 cut(s) 1254
BseMII CTCAG 1 cut(s) 193
BseRI GAGGAG 2 cut(s) 634, 940
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 3 cut(s) 170, 280, 1279
BseYI CCCAGC 2 cut(s) 865, 1263
BsgI GTGCAG 1 cut(s) 999
BshFI GGCC 4 cut(s) 197, 389, 1225, 1323
BsiHKAI GWGCWC 2 cut(s) 343, 675
BsiSI CCGG 1 cut(s) 1248
BslI CCNNNNNNNGG 1 cut(s) 1254
BsmAI GTCTC 2 cut(s) 411, 555
BsmI GAATGC 2 cut(s) 757, 823
BsnI GGCC 4 cut(s) 197, 389, 1225, 1323
Bsp1286I GDGCHC 3 cut(s) 343, 675, 1015
Bsp13I TCCGGA 1 cut(s) 1247
Bsp143I GATC 9 cut(s) 124, 453, 597, 684, 792, 946, 987, 1061, 1203
BspACI CCGC 2 cut(s) 386, 473
BspANI GGCC 4 cut(s) 197, 389, 1225, 1323
BspCNI CTCAG 1 cut(s) 192
BspEI TCCGGA 1 cut(s) 1247
BspHI TCATGA 1 cut(s) 795
BspLI GGNNCC 2 cut(s) 948, 1332
BspMAI CTGCAG 1 cut(s) 670
BspPI GGATC 5 cut(s) 800, 941, 954, 995, 1056
BspTI CTTAAG 1 cut(s) 70
BssMI GATC 9 cut(s) 124, 453, 597, 684, 792, 946, 987, 1061, 1203
Bst2UI CCWGG 2 cut(s) 1325, 1335
Bst4CI ACNGT 2 cut(s) 254, 908
BstAFI CTTAAG 1 cut(s) 70
BstAPI GCANNNNNTGC 2 cut(s) 862, 1001
BstC8I GCNNGC 3 cut(s) 24, 282, 462
BstDEI CTNAG 1 cut(s) 179
BstEII GGTNACC 1 cut(s) 1257
BstF5I GGATG 4 cut(s) 30, 528, 529, 774
BstKTI GATC 9 cut(s) 127, 456, 600, 687, 795, 949, 990, 1064, 1206
BstMAI GTCTC 2 cut(s) 411, 555
BstMBI GATC 9 cut(s) 124, 453, 597, 684, 792, 946, 987, 1061, 1203
BstMWI GCNNNNNNNGC 5 cut(s) 290, 470, 862, 1001, 1010
BstNI CCWGG 2 cut(s) 1325, 1335
BstNSI RCATGY 1 cut(s) 719
BstPI GGTNACC 1 cut(s) 1257
BstSCI CCNGG 2 cut(s) 1323, 1333
BstSFI CTRYAG 3 cut(s) 229, 250, 666
BstSLI GKGCMC 1 cut(s) 343
BstV1I GCAGC 3 cut(s) 170, 280, 1279
BstV2I GAAGAC 1 cut(s) 870
BstX2I RGATCY 3 cut(s) 946, 987, 1061
BstYI RGATCY 3 cut(s) 946, 987, 1061
BsuRI GGCC 4 cut(s) 197, 389, 1225, 1323
BtsCI GGATG 4 cut(s) 30, 528, 529, 774
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 1 cut(s) 663
Cac8I GCNNGC 3 cut(s) 24, 282, 462
CciI TCATGA 1 cut(s) 795
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 619
CviAII CATG 7 cut(s) 134, 457, 605, 716, 796, 811, 940
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 1 cut(s) 179
DpnI GATC 9 cut(s) 126, 455, 599, 686, 794, 948, 989, 1063, 1205
DpnII GATC 9 cut(s) 124, 453, 597, 684, 792, 946, 987, 1061, 1203
EaeI YGGCCR 1 cut(s) 387
Ecl136II GAGCTC 1 cut(s) 673
Eco24I GRGCYC 2 cut(s) 675, 1015
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 713
Eco91I GGTNACC 1 cut(s) 1257
EcoICRI GAGCTC 1 cut(s) 673
EcoO65I GGTNACC 1 cut(s) 1257
EcoRII CCWGG 2 cut(s) 1323, 1333
EcoT38I GRGCYC 2 cut(s) 675, 1015
FaeI CATG 7 cut(s) 137, 460, 608, 719, 799, 814, 943
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FatI CATG 7 cut(s) 133, 456, 604, 715, 795, 810, 939
FauI CCCGC 1 cut(s) 466
FauNDI CATATG 2 cut(s) 997, 1318
FbaI TGATCA 1 cut(s) 684
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 4 cut(s) 184, 294, 387, 1268
FokI GGATG 4 cut(s) 17, 515, 536, 781
FriOI GRGCYC 2 cut(s) 675, 1015
Fsp4HI GCNGC 4 cut(s) 184, 294, 387, 1268
FspBI CTAG 3 cut(s) 807, 1016, 1059
GluI GCNGC 4 cut(s) 184, 294, 387, 1268
GsaI CCCAGC 2 cut(s) 869, 1267
GsuI CTGGAG 1 cut(s) 1346
HaeIII GGCC 4 cut(s) 197, 389, 1225, 1323
HapII CCGG 1 cut(s) 1248
Hin1II CATG 7 cut(s) 137, 460, 608, 719, 799, 814, 943
HinfI GANTC 8 cut(s) 107, 145, 158, 260, 848, 1110, 1156, 1313
HpaII CCGG 1 cut(s) 1248
HphI GGTGA 5 cut(s) 281, 488, 1139, 1211, 1251
Hpy166II GTNNAC 3 cut(s) 250, 272, 341
Hpy188I TCNGA 3 cut(s) 205, 423, 1165
Hpy188III TCNNGA 8 cut(s) 149, 299, 748, 796, 918, 968, 1248, 1306
Hpy8I GTNNAC 3 cut(s) 250, 272, 341
HpyAV CCTTC 5 cut(s) 58, 374, 451, 773, 911
HpyCH4III ACNGT 2 cut(s) 254, 908
HpyF10VI GCNNNNNNNGC 5 cut(s) 290, 470, 862, 1001, 1010
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 7 cut(s) 137, 460, 608, 719, 799, 814, 943
Kpn2I TCCGGA 1 cut(s) 1247
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 9 cut(s) 124, 453, 597, 684, 792, 946, 987, 1061, 1203
LmnI GCTCC 2 cut(s) 678, 1076
Lsp1109I GCAGC 3 cut(s) 170, 280, 1279
LweI GCATC 2 cut(s) 899, 991
MaeI CTAG 3 cut(s) 807, 1016, 1059
MaeIII GTNAC 3 cut(s) 43, 720, 1257
MalI GATC 9 cut(s) 126, 455, 599, 686, 794, 948, 989, 1063, 1205
MboI GATC 9 cut(s) 124, 453, 597, 684, 792, 946, 987, 1061, 1203
MboII GAAGA 5 cut(s) 134, 668, 706, 870, 1247
MflI RGATCY 3 cut(s) 946, 987, 1061
MhlI GDGCHC 3 cut(s) 343, 675, 1015
MlyI GAGTC 1 cut(s) 857
MroI TCCGGA 1 cut(s) 1247
MroXI GAANNNNTTC 1 cut(s) 963
MslI CAYNNNNRTG 3 cut(s) 138, 191, 609
MspA1I CMGCKG 2 cut(s) 183, 293
MspCI CTTAAG 1 cut(s) 70
MspI CCGG 1 cut(s) 1248
MspR9I CCNGG 2 cut(s) 1325, 1335
Mva1269I GAATGC 2 cut(s) 757, 823
MvaI CCWGG 2 cut(s) 1325, 1335
MwoI GCNNNNNNNGC 5 cut(s) 290, 470, 862, 1001, 1010
NdeI CATATG 2 cut(s) 997, 1318
NdeII GATC 9 cut(s) 124, 453, 597, 684, 792, 946, 987, 1061, 1203
NlaIII CATG 7 cut(s) 137, 460, 608, 719, 799, 814, 943
NlaIV GGNNCC 2 cut(s) 948, 1332
NmuCI GTSAC 3 cut(s) 43, 720, 1257
NspI RCATGY 1 cut(s) 719
PagI TCATGA 1 cut(s) 795
PctI GAATGC 2 cut(s) 757, 823
PdmI GAANNNNTTC 1 cut(s) 963
PfeI GAWTC 7 cut(s) 107, 145, 158, 260, 1110, 1156, 1313
PfoI TCCNGGA 1 cut(s) 1333
PkrI GCNGC 4 cut(s) 185, 295, 388, 1269
PleI GAGTC 1 cut(s) 856
PpsI GAGTC 1 cut(s) 856
Psp124BI GAGCTC 1 cut(s) 675
Psp6I CCWGG 2 cut(s) 1323, 1333
PspEI GGTNACC 1 cut(s) 1257
PspFI CCCAGC 2 cut(s) 865, 1263
PspGI CCWGG 2 cut(s) 1323, 1333
PspN4I GGNNCC 2 cut(s) 948, 1332
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 670
PsuI RGATCY 3 cut(s) 946, 987, 1061
PvuII CAGCTG 2 cut(s) 183, 293
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 3 cut(s) 138, 191, 609
SacI GAGCTC 1 cut(s) 675
SatI GCNGC 4 cut(s) 184, 294, 387, 1268
Sau3AI GATC 9 cut(s) 124, 453, 597, 684, 792, 946, 987, 1061, 1203
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 857
ScrFI CCNGG 2 cut(s) 1325, 1335
SduI GDGCHC 3 cut(s) 343, 675, 1015
SfaNI GCATC 2 cut(s) 899, 991
SfcI CTRYAG 3 cut(s) 229, 250, 666
SmiMI CAYNNNNRTG 3 cut(s) 138, 191, 609
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
SsiI CCGC 2 cut(s) 386, 473
SspI AATATT 1 cut(s) 634
SspMI CTAG 3 cut(s) 807, 1016, 1059
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 2 cut(s) 1323, 1333
TaaI ACNGT 2 cut(s) 254, 908
TaqI TCGA 2 cut(s) 10, 150
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 7 cut(s) 107, 145, 158, 260, 1110, 1156, 1313
TscAI CASTG 1 cut(s) 670
TseFI GTSAC 3 cut(s) 43, 720, 1257
TseI GCWGC 3 cut(s) 183, 293, 1267
Tsp45I GTSAC 3 cut(s) 43, 720, 1257
TspDTI ATGAA 7 cut(s) 122, 483, 556, 669, 827, 845, 1268
TspRI CASTG 1 cut(s) 670
Vha464I CTTAAG 1 cut(s) 70
VneI GTGCAC 1 cut(s) 339
XapI RAATTY 5 cut(s) 814, 832, 1048, 1131, 1291
XceI RCATGY 1 cut(s) 719
XmiI GTMKAC 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 963
XspI CTAG 3 cut(s) 807, 1016, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.