Rw1G013900

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000294
Physical Location & Seq
Forward (+)
30964326 .. 30968347
4022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013900.1

Sequence Viewer

Length: 2667 bp
ATGGAGTGTCGAGGGTTGAGGCAAGTAATCATCCCGTCCTTTGTGACCTTCTGTTGCCTCATTGGTCACTTAAGTGCTGATATTGAGAAGTTAAACTATGATGTTGGCTCCATTATGGTTGAAGATCAGGTTCATATTGGTGTAATTCTCGATATGGAATCAAAAGGAAAGATTGTTCTCAGCTGCATTTCAATGGCCCTCTCTGATTTTTACCATCTCCACAGTAACTACAGCACAAGAATAGTTCTCTACAGTAGGGATTCGAAAGGTGAACCTCTGCCTGCTCTGTCAGCTGCTCTTGACTTATTGGAAAATATCAAAGTGGAAGCAATAATTGGTGCACCAAAAAGAGCAGAAGCAAACCTTCTGGCAGAATTAGGAGAAGCGGCCAAAATCCCTTTAATGTCTCTTTCTCCTGCTCGGACTGACAATAAATATCCCTTCTTTGTTGAGATCATGCGTGCTGATGAAGCGGCTGAAGTTAAGGGAATTAGTGCCATTATTGAAGTTTTCAAATGGAGGGATGTCATCCTTTTATATGATAGCAAAGAATGTGAGAGAGACTTCATTCCATCATTAGTCAAGTCATTCCAAGAGATCACACATGGGAGTGTTGCGTACAAAAGTTCCAATATTGCTTCCTCCTCATCAAATGAAGAAATCACTGCAGAGCTCCAAAAGTTGATCAACCTGAAGATTAAGGTATTTGTGGTGCATGTGTCACATTTTTTTGCACCTCGTCTTTTCTTGAATGCAAAGAAGTTAGGGATGATGAGCGAAGGGTATGCTTGGATCACAACATCAACTAGCATGAATTTCTTGCATTCTATGAATTTATCTGTTATTGAGTCAATGCAAGGAGTGTTGGGTTTCAAGTCTTCTATTCCAGCATCAATAAACCTTCACAGTCTTACATCAAGATTGAGGAGGAAGTTTTACATGGAGGATCCAAATATGGAAGCAATTCTGGAGTTAAGTGCAGATGGGATCTGGGCATATGATGCAACTTGGGCTCTAGCAGAAGCAGTTGAAAGAGCAAGGCTTAAAAATTCTACCACTAGATCCTCCAAAGATGGAGCTGTGCTTCTTAGAGAGATATTGCAGACCAGATTCAAAGGTTTAAGTGGTGAAATTCAATATGTGAATGGGAAACTGATTCCATCAGAACCATTTGAGATAGTTAATGTTATTGGAAAAGGTGAGATCAAAAGGATTGGATTTTGGCCTTGCAAAGAAGAAGTAAAATCCGGAAAAGGGTCACCCCAGCAGCAACTCATTCATAATGGGAGAAATTTAGCTTCTACAATTGATCTTGAAAGAATCATATGGCCTGGAGGTTCCAGGAGGGAATGGAGTAGTAGTGAAACACTTAAACTAAAAATTGGTGTTCCAGTGAGAATTGGGTTCAAGGAACTTGTTCGTGTCGAGCATGATCTTGAAACCAATACAACTCATGTCACTGGCTTCTCTATAGACGTATTCAAAGCTGCAATAGGAGCTTTGCCATATGAAGTGCCATACGAGTTTATTCCATTTGAGGATGCCAATGGAAATCTTGCAGGGACTTATAATGATCTTGTTTACCAGGTTTATCTCAAGAAATACGATGCTGTTGTTGGAGATGTTACGATCACAGAGAACAGATCTCAGTATGTTGATTTTACAATACCATATACCGACTTGGGTGTGGGAATGTTGGTACCAAATGCCAAGGAAAACATGTGGATTTTCTTTAAACCACTTTCAACATATCTTTGGTTAACAAGTGCTGCTTTCTTTATCCTAACCAGTTTTGTTGTTTGGATCATTGAGCGTCCTACTAACAAAGAATTCCAGGGCACAGTAGAGGAGCAAATCGGAACACTTTTCTGGTTCTCCTTTTCTACTCTTGTGTTTGCTTATACGGAAAAGTTGTCAAATAATTTGGCAAAGTTTGTAGTGATCATATGGGTGTTTGTAGTGCTTATATTGTCATCAAGTTATACTGCAACTTTAGCATCAATGATGACGGTCAAACAGATAGAGTTAAACTCGAGAGGGAACTATATAGGTTATCAATCGGGTTCATTAGGAGTTCTAGTGAACTTAAATTTGAAAGCAGCAAAGTCATATCATTCAGAAGAAGAATATATTGATGCTCTATCCAAAGGAAGCAAGAATGGTGGGGTTTCTGGGATTATTGACGAGGTTCCGTACATCAATATCTTCCTTGCAAAGTATTCTGCTGACTACTCGATGATTAAAACCAGGGCTGTCACCAATGGTTTTGCCTTTGTTTTCCCTAAAGGTTCGAAATTGGTTCACGATGTCTCAAGGCAAATTGAACGTCTGAGACAGGAAGAAAAGCTTCTAGAGATGGAAAAGACCTGGTTTCGTGAAAAAACAACTCTCATGTCTGATGAGGATATGACCCAGAGTGATCCCAATACGATTGACCTCTATGACTTTCGTGGTCTGTTCCTTATTAGTGGGGCTTCTTTAGCTATTTCTCTTTTCTTCTTCGTAGTTTTATCCACTAGATTTAGGAATCTGTTTCAAGGACTAATGCAGCTGATTCGTATAGAACTGCAGCGTTTCAGGACGTTCTTCTCCTACATAGTATGCAATGGAATTGAGCAAAACTGCATGCAAGTTCCTACGCAAGTCATTGTACATGCTGTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

888

Amino Acids

100.05

Weight (kDa)

6.22

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 44 - 396 3.4e-15 Periplasmic binding protein
ANF_receptor PF01094 61 - 397 2.7e-58 Receptor family ligand binding region
Lig_chan-Glu_bd PF10613 477 - 569 2.9e-10 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 482 - 792 8.9e-13 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 583 - 825 5.8e-27 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1569
Acc65I GGTACC 1 cut(s) 1699
AccB1I GGYRCC 1 cut(s) 1699
AccIII TCCGGA 1 cut(s) 1247
AciI CCGC 2 cut(s) 386, 473
AclWI GGATC 7 cut(s) 800, 941, 954, 995, 1056, 1811, 2414
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 7 cut(s) 814, 832, 1048, 1131, 1291, 1829, 2089
AcuI CTGAAG 2 cut(s) 498, 713
AfaI GTAC 4 cut(s) 620, 1701, 2195, 2652
AfiI CCNNNNNNNGG 1 cut(s) 1254
AflII CTTAAG 1 cut(s) 70
AflIII ACRYGT 1 cut(s) 1719
AjnI CCWGG 6 cut(s) 1330, 1340, 1584, 1833, 2246, 2366
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AleI CACNNNNGTG 1 cut(s) 72
AloI GAACNNNNNNTCC 2 cut(s) 159, 191
Alw21I GWGCWC 2 cut(s) 343, 675
Alw26I GTCTC 4 cut(s) 411, 555, 2314, 2326
Alw44I GTGCAC 1 cut(s) 339
AlwI GGATC 7 cut(s) 800, 941, 954, 995, 1056, 1811, 2414
Ama87I CYCGRG 1 cut(s) 2032
Aor13HI TCCGGA 1 cut(s) 1247
AoxI GGCC 4 cut(s) 195, 387, 1223, 1328
ApaLI GTGCAC 1 cut(s) 339
ApeKI GCWGC 8 cut(s) 183, 293, 1267, 1487, 1769, 2099, 2548, 2569
ApoI RAATTY 7 cut(s) 814, 832, 1048, 1131, 1291, 1829, 2089
ArsI GACNNNNNNTTYG 2 cut(s) 2311, 2343
Asp700I GAANNNNTTC 3 cut(s) 963, 1416, 2346
Asp718I GGTACC 1 cut(s) 1699
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 5 cut(s) 281, 1139, 1211, 1251, 2248
AsuII TTCGAA 2 cut(s) 263, 2291
AvaI CYCGRG 1 cut(s) 2032
BaeGI GKGCMC 2 cut(s) 343, 1841
BamHI GGATCC 1 cut(s) 946
BanI GGYRCC 1 cut(s) 1699
BanII GRGCYC 2 cut(s) 675, 1015
BbsI GAAGAC 1 cut(s) 870
Bbv12I GWGCWC 2 cut(s) 343, 675
BbvI GCAGC 8 cut(s) 170, 280, 1279, 1474, 1756, 2111, 2560, 2581
BccI CCATC 6 cut(s) 222, 580, 977, 1067, 1168, 2350
BcgI CGANNNNNNTGC 4 cut(s) 767, 801, 2537, 2571
BciT130I CCWGG 6 cut(s) 1332, 1342, 1586, 1835, 2248, 2368
BclI TGATCA 2 cut(s) 684, 1941
BcoDI GTCTC 4 cut(s) 411, 555, 2314, 2326
BfaI CTAG 6 cut(s) 807, 1016, 1059, 2078, 2351, 2517
BfmI CTRYAG 5 cut(s) 229, 250, 666, 1470, 2567
BfrI CTTAAG 1 cut(s) 70
BglII AGATCT 1 cut(s) 1643
Bme1390I CCNGG 6 cut(s) 1332, 1342, 1586, 1835, 2248, 2368
BmeT110I CYCGRG 1 cut(s) 2032
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 5 cut(s) 109, 948, 1339, 1701, 2190
BmrFI CCNGG 6 cut(s) 1332, 1342, 1586, 1835, 2248, 2368
BmsI GCATC 6 cut(s) 899, 991, 1531, 1597, 2006, 2125
BpiI GAAGAC 1 cut(s) 870
BplI GAGNNNNNCTC 2 cut(s) 2015, 2047
BpmI CTGGAG 2 cut(s) 989, 1353
Bpu14I TTCGAA 2 cut(s) 263, 2291
BpuEI CTTGAG 2 cut(s) 1580, 2296
BsaJI CCNNGG 3 cut(s) 1710, 1834, 2247
BsaWI WCCGGW 1 cut(s) 1247
BsaXI ACNNNNNCTCC 4 cut(s) 1345, 1375, 2064, 2094
Bsc4I CCNNNNNNNGG 1 cut(s) 1254
Bse1I ACTGG 3 cut(s) 1391, 1465, 1788
Bse3DI GCAATG 1 cut(s) 2611
BseAI TCCGGA 1 cut(s) 1247
BseBI CCWGG 6 cut(s) 1332, 1342, 1586, 1835, 2248, 2368
BseDI CCNNGG 3 cut(s) 1710, 1834, 2247
BseGI GGATG 5 cut(s) 30, 528, 529, 774, 1546
BseLI CCNNNNNNNGG 1 cut(s) 1254
BseMI GCAATG 1 cut(s) 2611
BseMII CTCAG 3 cut(s) 193, 1661, 2321
BseNI ACTGG 3 cut(s) 1391, 1465, 1788
BseRI GAGGAG 3 cut(s) 634, 940, 1862
BseSI GKGCMC 2 cut(s) 343, 1841
BseXI GCAGC 8 cut(s) 170, 280, 1279, 1474, 1756, 2111, 2560, 2581
BseYI CCCAGC 1 cut(s) 1263
BsgI GTGCAG 1 cut(s) 999
BshFI GGCC 4 cut(s) 197, 389, 1225, 1330
BshNI GGYRCC 1 cut(s) 1699
BsiHKAI GWGCWC 2 cut(s) 343, 675
BsiHKCI CYCGRG 1 cut(s) 2032
BsiSI CCGG 1 cut(s) 1248
BslFI GGGAC 1 cut(s) 1576
BslI CCNNNNNNNGG 1 cut(s) 1254
BsmAI GTCTC 4 cut(s) 411, 555, 2314, 2326
BsmFI GGGAC 1 cut(s) 1576
BsmI GAATGC 2 cut(s) 757, 823
BsnI GGCC 4 cut(s) 197, 389, 1225, 1330
BsoBI CYCGRG 1 cut(s) 2032
Bsp119I TTCGAA 2 cut(s) 263, 2291
Bsp1286I GDGCHC 4 cut(s) 343, 675, 1015, 1841
Bsp13I TCCGGA 1 cut(s) 1247
Bsp1407I TGTACA 1 cut(s) 2650
BspACI CCGC 2 cut(s) 386, 473
BspANI GGCC 4 cut(s) 197, 389, 1225, 1330
BspCNI CTCAG 3 cut(s) 192, 1660, 2322
BspEI TCCGGA 1 cut(s) 1247
BspLI GGNNCC 5 cut(s) 109, 948, 1339, 1701, 2190
BspMAI CTGCAG 2 cut(s) 670, 2571
BspPI GGATC 7 cut(s) 800, 941, 954, 995, 1056, 1811, 2414
BspT104I TTCGAA 2 cut(s) 263, 2291
BspT107I GGYRCC 1 cut(s) 1699
BspTI CTTAAG 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 2611
BsrGI TGTACA 1 cut(s) 2650
BsrI ACTGG 3 cut(s) 1391, 1465, 1788
BssECI CCNNGG 3 cut(s) 1710, 1834, 2247
BssT1I CCWWGG 1 cut(s) 1710
Bst2UI CCWGG 6 cut(s) 1332, 1342, 1586, 1835, 2248, 2368
Bst4CI ACNGT 5 cut(s) 224, 254, 908, 1843, 2011
BstAFI CTTAAG 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 1001
BstAUI TGTACA 1 cut(s) 2650
BstBI TTCGAA 2 cut(s) 263, 2291
BstC8I GCNNGC 3 cut(s) 282, 462, 2627
BstDEI CTNAG 4 cut(s) 179, 1088, 1647, 2330
BstEII GGTNACC 1 cut(s) 1257
BstF5I GGATG 5 cut(s) 30, 528, 529, 774, 1546
BstMAI GTCTC 4 cut(s) 411, 555, 2314, 2326
BstMWI GCNNNNNNNGC 7 cut(s) 290, 470, 1001, 1010, 1496, 1994, 2480
BstNI CCWGG 6 cut(s) 1332, 1342, 1586, 1835, 2248, 2368
BstNSI RCATGY 4 cut(s) 719, 1723, 2629, 2657
BstPI GGTNACC 1 cut(s) 1257
BstSCI CCNGG 6 cut(s) 1330, 1340, 1584, 1833, 2246, 2366
BstSFI CTRYAG 5 cut(s) 229, 250, 666, 1470, 2567
BstSLI GKGCMC 2 cut(s) 343, 1841
BstV1I GCAGC 8 cut(s) 170, 280, 1279, 1474, 1756, 2111, 2560, 2581
BstV2I GAAGAC 1 cut(s) 870
BstX2I RGATCY 4 cut(s) 946, 987, 1061, 1643
BstYI RGATCY 4 cut(s) 946, 987, 1061, 1643
BsuRI GGCC 4 cut(s) 197, 389, 1225, 1330
BtsCI GGATG 5 cut(s) 30, 528, 529, 774, 1546
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 3 cut(s) 663, 1398, 1458
Cac8I GCNNGC 3 cut(s) 282, 462, 2627
Cfr13I GGNCC 1 cut(s) 196
CseI GACGC 1 cut(s) 1802
CsiI ACCWGGT 2 cut(s) 1584, 2366
Csp6I GTAC 4 cut(s) 619, 1700, 2194, 2651
CspCI CAANNNNNGTGG 2 cut(s) 2143, 2178
CviQI GTAC 4 cut(s) 619, 1700, 2194, 2651
DdeI CTNAG 4 cut(s) 179, 1088, 1647, 2330
DraI TTTAAA 1 cut(s) 1735
EaeI YGGCCR 1 cut(s) 387
Ecl136II GAGCTC 1 cut(s) 673
Eco130I CCWWGG 1 cut(s) 1710
Eco24I GRGCYC 2 cut(s) 675, 1015
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 2 cut(s) 498, 713
Eco88I CYCGRG 1 cut(s) 2032
Eco91I GGTNACC 1 cut(s) 1257
EcoICRI GAGCTC 1 cut(s) 673
EcoO65I GGTNACC 1 cut(s) 1257
EcoRI GAATTC 1 cut(s) 1829
EcoRII CCWGG 6 cut(s) 1330, 1340, 1584, 1833, 2246, 2366
EcoT14I CCWWGG 1 cut(s) 1710
EcoT38I GRGCYC 2 cut(s) 675, 1015
ErhI CCWWGG 1 cut(s) 1710
FalI AAGNNNNNCTT 6 cut(s) 348, 380, 1756, 1788, 2331, 2363
FaqI GGGAC 1 cut(s) 1576
FauNDI CATATG 4 cut(s) 997, 1325, 1507, 1946
FbaI TGATCA 2 cut(s) 684, 1941
FokI GGATG 5 cut(s) 17, 515, 536, 781, 1553
FriOI GRGCYC 2 cut(s) 675, 1015
FspBI CTAG 6 cut(s) 807, 1016, 1059, 2078, 2351, 2517
GsaI CCCAGC 1 cut(s) 1267
GsuI CTGGAG 2 cut(s) 989, 1353
HaeIII GGCC 4 cut(s) 197, 389, 1225, 1330
HapII CCGG 1 cut(s) 1248
HgaI GACGC 1 cut(s) 1802
HincII GTYRAC 1 cut(s) 1761
HindII GTYRAC 1 cut(s) 1761
HindIII AAGCTT 1 cut(s) 2345
HinfI GANTC 8 cut(s) 158, 260, 848, 1110, 1156, 1320, 2527, 2554
HpaI GTTAAC 1 cut(s) 1761
HpaII CCGG 1 cut(s) 1248
HphI GGTGA 5 cut(s) 281, 1139, 1211, 1251, 2248
Hpy166II GTNNAC 6 cut(s) 272, 341, 1582, 1761, 2083, 2302
Hpy188I TCNGA 7 cut(s) 205, 423, 1165, 1859, 2119, 2331, 2398
Hpy8I GTNNAC 6 cut(s) 272, 341, 1582, 1761, 2083, 2302
HpyAV CCTTC 5 cut(s) 58, 374, 451, 773, 911
HpyCH4III ACNGT 5 cut(s) 224, 254, 908, 1843, 2011
HpyCH4IV ACGT 3 cut(s) 1476, 2326, 2582
HpyF10VI GCNNNNNNNGC 7 cut(s) 290, 470, 1001, 1010, 1496, 1994, 2480
HpyF3I CTNAG 4 cut(s) 179, 1088, 1647, 2330
HpySE526I ACGT 3 cut(s) 1476, 2326, 2582
Kpn2I TCCGGA 1 cut(s) 1247
KpnI GGTACC 1 cut(s) 1703
Ksp22I TGATCA 2 cut(s) 684, 1941
KspAI GTTAAC 1 cut(s) 1761
LmnI GCTCC 5 cut(s) 113, 678, 1076, 1496, 1849
Lsp1109I GCAGC 8 cut(s) 170, 280, 1279, 1474, 1756, 2111, 2560, 2581
LweI GCATC 6 cut(s) 899, 991, 1531, 1597, 2006, 2125
MabI ACCWGGT 2 cut(s) 1584, 2366
MaeI CTAG 6 cut(s) 807, 1016, 1059, 2078, 2351, 2517
MaeII ACGT 3 cut(s) 1476, 2326, 2582
MaeIII GTNAC 8 cut(s) 43, 65, 224, 720, 1257, 1456, 1624, 2254
MfeI CAATTG 1 cut(s) 1305
MflI RGATCY 4 cut(s) 946, 987, 1061, 1643
MhlI GDGCHC 4 cut(s) 343, 675, 1015, 1841
MlyI GAGTC 1 cut(s) 857
MmeI TCCRAC 1 cut(s) 1597
MroI TCCGGA 1 cut(s) 1247
MroXI GAANNNNTTC 3 cut(s) 963, 1416, 2346
MslI CAYNNNNRTG 5 cut(s) 72, 138, 191, 609, 1949
MspA1I CMGCKG 3 cut(s) 183, 293, 2551
MspCI CTTAAG 1 cut(s) 70
MspI CCGG 1 cut(s) 1248
MspR9I CCNGG 6 cut(s) 1332, 1342, 1586, 1835, 2248, 2368
MunI CAATTG 1 cut(s) 1305
Mva1269I GAATGC 2 cut(s) 757, 823
MvaI CCWGG 6 cut(s) 1332, 1342, 1586, 1835, 2248, 2368
MwoI GCNNNNNNNGC 7 cut(s) 290, 470, 1001, 1010, 1496, 1994, 2480
NdeI CATATG 4 cut(s) 997, 1325, 1507, 1946
NlaIV GGNNCC 5 cut(s) 109, 948, 1339, 1701, 2190
NmuCI GTSAC 6 cut(s) 43, 65, 720, 1257, 1456, 2254
NspI RCATGY 4 cut(s) 719, 1723, 2629, 2657
NspV TTCGAA 2 cut(s) 263, 2291
OliI CACNNNNGTG 1 cut(s) 72
PaeI GCATGC 1 cut(s) 2629
PaeR7I CTCGAG 1 cut(s) 2032
PciI ACATGT 1 cut(s) 1719
PctI GAATGC 2 cut(s) 757, 823
PdmI GAANNNNTTC 3 cut(s) 963, 1416, 2346
PfeI GAWTC 7 cut(s) 158, 260, 1110, 1156, 1320, 2527, 2554
PfoI TCCNGGA 1 cut(s) 1340
PleI GAGTC 1 cut(s) 856
PpsI GAGTC 1 cut(s) 856
PscI ACATGT 1 cut(s) 1719
PsiI TTATAA 1 cut(s) 1569
Psp124BI GAGCTC 1 cut(s) 675
Psp6I CCWGG 6 cut(s) 1330, 1340, 1584, 1833, 2246, 2366
PspEI GGTNACC 1 cut(s) 1257
PspFI CCCAGC 1 cut(s) 1263
PspGI CCWGG 6 cut(s) 1330, 1340, 1584, 1833, 2246, 2366
PspN4I GGNNCC 5 cut(s) 109, 948, 1339, 1701, 2190
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 2 cut(s) 670, 2571
PsuI RGATCY 4 cut(s) 946, 987, 1061, 1643
PvuII CAGCTG 3 cut(s) 183, 293, 2551
RsaI GTAC 4 cut(s) 620, 1701, 2195, 2652
RsaNI GTAC 4 cut(s) 619, 1700, 2194, 2651
RseI CAYNNNNRTG 5 cut(s) 72, 138, 191, 609, 1949
SacI GAGCTC 1 cut(s) 675
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 857
ScrFI CCNGG 6 cut(s) 1332, 1342, 1586, 1835, 2248, 2368
SduI GDGCHC 4 cut(s) 343, 675, 1015, 1841
SexAI ACCWGGT 2 cut(s) 1584, 2366
SfaNI GCATC 6 cut(s) 899, 991, 1531, 1597, 2006, 2125
SfcI CTRYAG 5 cut(s) 229, 250, 666, 1470, 2567
Sfr274I CTCGAG 1 cut(s) 2032
SfuI TTCGAA 2 cut(s) 263, 2291
SlaI CTCGAG 1 cut(s) 2032
SmiMI CAYNNNNRTG 5 cut(s) 72, 138, 191, 609, 1949
SmlI CTYRAG 4 cut(s) 70, 1595, 2032, 2311
SmoI CTYRAG 4 cut(s) 70, 1595, 2032, 2311
SphI GCATGC 1 cut(s) 2629
SsiI CCGC 2 cut(s) 386, 473
SspI AATATT 1 cut(s) 634
SspMI CTAG 6 cut(s) 807, 1016, 1059, 2078, 2351, 2517
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 6 cut(s) 1330, 1340, 1584, 1833, 2246, 2366
StyI CCWWGG 1 cut(s) 1710
TaaI ACNGT 5 cut(s) 224, 254, 908, 1843, 2011
TaiI ACGT 3 cut(s) 1479, 2329, 2585
TaqI TCGA 7 cut(s) 10, 150, 263, 1425, 2033, 2234, 2291
TatI WGTACW 1 cut(s) 2650
TauI GCSGC 2 cut(s) 389, 476
TfiI GAWTC 7 cut(s) 158, 260, 1110, 1156, 1320, 2527, 2554
TscAI CASTG 3 cut(s) 670, 1398, 1465
TseFI GTSAC 6 cut(s) 43, 65, 720, 1257, 1456, 2254
TseI GCWGC 8 cut(s) 183, 293, 1267, 1487, 1769, 2099, 2548, 2569
Tsp45I GTSAC 6 cut(s) 43, 65, 720, 1257, 1456, 2254
TspDTI ATGAA 9 cut(s) 122, 483, 556, 669, 827, 845, 1268, 1524, 2055
TspGWI ACGGA 2 cut(s) 1919, 2181
TspRI CASTG 3 cut(s) 670, 1398, 1465
Vha464I CTTAAG 1 cut(s) 70
VneI GTGCAC 1 cut(s) 339
XapI RAATTY 7 cut(s) 814, 832, 1048, 1131, 1291, 1829, 2089
XbaI TCTAGA 1 cut(s) 2350
XceI RCATGY 4 cut(s) 719, 1723, 2629, 2657
XhoI CTCGAG 1 cut(s) 2032
XmnI GAANNNNTTC 3 cut(s) 963, 1416, 2346
XspI CTAG 6 cut(s) 807, 1016, 1059, 2078, 2351, 2517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.