Rh5DG442600

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000294
Physical Location & Seq
Forward (+)
70877627 .. 70878007
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG442600.1

Sequence Viewer

Length: 381 bp
ATGAATGATCATAGAAATTTCGCACTGAACAAGATCGGCAAGATGATATGTATAAAGCTAAAGATTCTAAGTACGTTTGAAACAAGATCAGCATTATATAACATTATTTGGCGATTGCATACAAACTGTATGGAGTTTCGAGGGACGTCTAAGAAAACAATCATCCTTTCCTCCTTAGTGACCCTATGTTGCCTCATTGGTCCCTTGTGTGCTGATACTGAAAATATAAATAATGTTGTTAATACCATGAATGTGGAAGATCAAGTTCATATTGGTGTGATTCTAGACATGGGATCACTGGAAGGAAAGATTGTTCTCGGCTGTATTTCAATGGCCCTATCTGATTTTACCATCTGCATAATAACTACAGCACAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

126

Amino Acids

14.01

Weight (kDa)

6.8

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 149
AclWI GGATC 1 cut(s) 301
AcsI RAATTY 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 146
AfaI GTAC 1 cut(s) 73
AgsI TTSAA 2 cut(s) 80, 330
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
AlwI GGATC 1 cut(s) 301
AoxI GGCC 1 cut(s) 333
ApoI RAATTY 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 200, 334
AvaII GGWCC 1 cut(s) 200
BccI CCATC 1 cut(s) 359
BclI TGATCA 1 cut(s) 7
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 2 cut(s) 200, 334
BmiI GGNNCC 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 303
BshFI GGCC 1 cut(s) 335
BslFI GGGAC 2 cut(s) 157, 186
BsmFI GGGAC 2 cut(s) 157, 186
BsnI GGCC 1 cut(s) 335
Bsp143I GATC 5 cut(s) 7, 33, 86, 259, 293
BspANI GGCC 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 202
BspPI GGATC 1 cut(s) 301
BsrI ACTGG 1 cut(s) 303
BssMI GATC 5 cut(s) 7, 33, 86, 259, 293
BssNI GRCGYC 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 146
BstDEI CTNAG 3 cut(s) 68, 150, 175
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 5 cut(s) 10, 36, 89, 262, 296
BstMBI GATC 5 cut(s) 7, 33, 86, 259, 293
BstSFI CTRYAG 1 cut(s) 366
BstXI CCANNNNNNTGG 1 cut(s) 253
BsuRI GGCC 1 cut(s) 335
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 23, 296
Cfr13I GGNCC 2 cut(s) 200, 334
Csp6I GTAC 1 cut(s) 72
CviAII CATG 2 cut(s) 247, 289
CviJI RGCY 3 cut(s) 58, 321, 335
CviKI_1 RGCY 3 cut(s) 58, 321, 335
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 3 cut(s) 68, 150, 175
DpnI GATC 5 cut(s) 9, 35, 88, 261, 295
DpnII GATC 5 cut(s) 7, 33, 86, 259, 293
Eco47I GGWCC 1 cut(s) 200
FaeI CATG 2 cut(s) 250, 292
FaqI GGGAC 2 cut(s) 157, 186
FatI CATG 2 cut(s) 246, 288
FbaI TGATCA 1 cut(s) 7
FokI GGATG 1 cut(s) 149
FspBI CTAG 1 cut(s) 284
HaeIII GGCC 1 cut(s) 335
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 2 cut(s) 250, 292
HinfI GANTC 2 cut(s) 64, 280
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 2 cut(s) 74, 146
HpyCH4V TGCA 2 cut(s) 118, 357
HpyF3I CTNAG 3 cut(s) 68, 150, 175
HpySE526I ACGT 2 cut(s) 74, 146
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 2 cut(s) 250, 292
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 5 cut(s) 7, 33, 86, 259, 293
LpnPI CCDG 1 cut(s) 284
MaeI CTAG 1 cut(s) 284
MaeII ACGT 2 cut(s) 74, 146
MaeIII GTNAC 1 cut(s) 178
MalI GATC 5 cut(s) 9, 35, 88, 261, 295
MboI GATC 5 cut(s) 7, 33, 86, 259, 293
MboII GAAGA 1 cut(s) 269
MluCI AATT 1 cut(s) 16
MnlI CCTC 3 cut(s) 134, 181, 203
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 2 cut(s) 251, 273
NdeII GATC 5 cut(s) 7, 33, 86, 259, 293
NlaIII CATG 2 cut(s) 250, 292
NlaIV GGNNCC 1 cut(s) 202
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 64, 280
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 2 cut(s) 200, 334
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 2 cut(s) 251, 273
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 5 cut(s) 7, 33, 86, 259, 293
Sau96I GGNCC 2 cut(s) 200, 334
SetI ASST 3 cut(s) 60, 77, 149
SfcI CTRYAG 1 cut(s) 366
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 2 cut(s) 251, 273
Sse9I AATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 2 cut(s) 77, 149
TaqI TCGA 1 cut(s) 139
TasI AATT 1 cut(s) 16
TfiI GAWTC 2 cut(s) 64, 280
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 2 cut(s) 30, 303
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 17, 257, 263
TspRI CASTG 2 cut(s) 30, 303
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 1 cut(s) 16
XbaI TCTAGA 1 cut(s) 283
XspI CTAG 1 cut(s) 284
ZraI GACGTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.