Rh1BG137600

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000294
Physical Location & Seq
Forward (+)
22951777 .. 22952061
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG137600.1

Sequence Viewer

Length: 285 bp
ATGTCTCTTTCTCGTCCTCTGACTGACAATAAATATCCTTTCTTTGTTGAGGTCATGCGCAGTGATCAAGCTGCCGAAGTTAGGGGAATCAGTGCGCTTATTGAAGTATTCAAATGGAGGGATGTTGTAATTTTATATGATAGCAAAGAATATGAGAAAGACTTCATTCCATCATTAGTCAACCCTTTCCAAGACATCACACATCCGAGTGTTTCATACAAGAATTCCAATATTGCTTCCTCCTCATCATATGAAGAAATCACTGAAGAGCGCTCCAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

94

Amino Acids

10.86

Weight (kDa)

4.91

Isoelectric Point (pI)

67.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 9 - 87 2.9e-08 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 59
AcsI RAATTY 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 285
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 2 cut(s) 104, 112
AluBI AGCT 2 cut(s) 71, 282
AluI AGCT 2 cut(s) 71, 282
Alw26I GTCTC 1 cut(s) 9
Aor51HI AGCGCT 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 223
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 3 cut(s) 60, 97, 273
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 178
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 274
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 127, 202
BseLI CCNNNNNNNGG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 261
BssMI GATC 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 261
BstF5I GGATG 2 cut(s) 127, 202
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 3 cut(s) 60, 97, 273
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 58
BtsCI GGATG 2 cut(s) 127, 202
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 3 cut(s) 67, 97, 261
CfoI GCGC 3 cut(s) 60, 97, 273
CviAII CATG 1 cut(s) 55
CviJI RGCY 2 cut(s) 71, 282
CviKI_1 RGCY 2 cut(s) 71, 282
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco47III AGCGCT 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 223
FaeI CATG 1 cut(s) 58
FaiI YATR 7 cut(s) 56, 136, 138, 153, 217, 250, 252
FatI CATG 1 cut(s) 54
FauNDI CATATG 1 cut(s) 250
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 134, 189
Fsp4HI GCNGC 1 cut(s) 72
FspI TGCGCA 1 cut(s) 59
GlaI GCGC 3 cut(s) 59, 96, 272
GluI GCNGC 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 274
HhaI GCGC 3 cut(s) 60, 97, 273
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 3 cut(s) 58, 95, 271
HinP1I GCGC 3 cut(s) 58, 95, 271
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 21, 207
Hpy8I GTNNAC 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 3 cut(s) 58, 95, 271
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 1 cut(s) 64
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 1 cut(s) 278
Lsp1109I GCAGC 1 cut(s) 58
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 2 cut(s) 266, 278
MluCI AATT 2 cut(s) 129, 223
MnlI CCTC 5 cut(s) 27, 43, 111, 250, 253
MroXI GAANNNNTTC 1 cut(s) 161
MslI CAYNNNNRTG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 279
NdeI CATATG 1 cut(s) 250
NdeII GATC 1 cut(s) 64
NlaIII CATG 1 cut(s) 58
NsbI TGCGCA 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 87
PkrI GCNGC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 207
SapI GCTCTTC 1 cut(s) 261
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 64
SetI ASST 3 cut(s) 54, 73, 284
SgeI CNNG 6 cut(s) 24, 67, 80, 203, 219, 232
SmiMI CAYNNNNRTG 1 cut(s) 207
Sse9I AATT 2 cut(s) 129, 223
SspI AATATT 1 cut(s) 232
TasI AATT 2 cut(s) 129, 223
TfiI GAWTC 1 cut(s) 87
TscAI CASTG 3 cut(s) 67, 97, 268
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 154, 204, 267
TspRI CASTG 3 cut(s) 67, 97, 268
XapI RAATTY 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.