Rh1CG157500

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000294
Physical Location & Seq
Forward (+)
34818070 .. 34825633
7564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG157500.1

Sequence Viewer

Length: 555 bp
ATGGCTCAAATGTATGGAGTTTCACTCTGCATATTATTTTGCTTCCTGGGTCTCTTGTGTGCTGAAGTTGATGATAAAGTGCATTACAACAGTCCTAGTGTTGTGGACGAGGTTGACGTTGGTGTGATTCTTGATATGGGATCAAGGGAAGCAAAACTTGTTCTCAGTTGCATTTCAATGGCCCTGTCTGATTTCTACAATCTGCACAACAACTACAGCACAAGAGTAGTTCTGCACAGTAGGGATTCCCATGGAAAAGCTCTACATGCTCTATCAGCTGCTGTTAGTCTGTTGGATAACATCAAAGTGGAAGCAATAATTAGTGCAGAACCAAGAATGGAAGCAGACCTATTGGAAGAATTAGGAGGAGTTGAAGTCCCAGTATTGTCTCTGTGTCAACCTATTCCTTCTCCTTCTCTGACTCATCGATATCCCTTCTTCATTGAGATCAGACAGGATGAAATTTCTCAGGTAACGAGTGCATCAAAGAGGTCAATATCCAATCTAAACGACCTTCATAACCTGTGGAAGCATCTCATCTTCTCATCAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

184

Amino Acids

20.36

Weight (kDa)

5.24

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 55 - 159 7.7e-08 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 84
AgsI TTSAA 2 cut(s) 177, 374
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 2 cut(s) 260, 278
AluI AGCT 2 cut(s) 260, 278
Alw26I GTCTC 2 cut(s) 56, 393
AlwI GGATC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 281
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 2 cut(s) 56, 393
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 214
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 2 cut(s) 491, 541
BmuI ACTGGG 1 cut(s) 374
BplI GAGNNNNNCTC 2 cut(s) 9, 41
Bsa29I ATCGAT 1 cut(s) 427
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 46, 250
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bse1I ACTGG 1 cut(s) 380
BseBI CCWGG 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 46, 250
BseGI GGATG 1 cut(s) 463
BseMII CTCAG 2 cut(s) 178, 482
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 265
BsgI GTGCAG 3 cut(s) 188, 218, 345
BshFI GGCC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 427
BslFI GGGAC 1 cut(s) 362
BsmAI GTCTC 2 cut(s) 56, 393
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 140, 447
Bsp19I CCATGG 1 cut(s) 250
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 177, 481
BspDI ATCGAT 1 cut(s) 427
BspPI GGATC 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 46, 250
BssMI GATC 2 cut(s) 140, 447
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 92, 239
BstDEI CTNAG 3 cut(s) 164, 468, 552
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 2 cut(s) 143, 450
BstMAI GTCTC 2 cut(s) 56, 393
BstMBI GATC 2 cut(s) 140, 447
BstMWI GCNNNNNNNGC 2 cut(s) 266, 275
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 265
Bsu15I ATCGAT 1 cut(s) 427
BsuRI GGCC 1 cut(s) 182
BsuTUI ATCGAT 1 cut(s) 427
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 463
CaiI CAGNNNCTG 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 181
ClaI ATCGAT 1 cut(s) 427
CviAII CATG 2 cut(s) 251, 266
CviJI RGCY 4 cut(s) 5, 182, 260, 278
CviKI_1 RGCY 4 cut(s) 5, 182, 260, 278
DdeI CTNAG 3 cut(s) 164, 468, 552
DpnI GATC 2 cut(s) 142, 449
DpnII GATC 2 cut(s) 140, 447
Eco130I CCWWGG 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 56
Eco32I GATATC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 45
EcoRV GATATC 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 2 cut(s) 254, 269
FaiI YATR 6 cut(s) 15, 32, 137, 252, 267, 519
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FaqI GGGAC 1 cut(s) 362
FatI CATG 2 cut(s) 250, 265
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 2 cut(s) 254, 269
HincII GTYRAC 2 cut(s) 115, 398
HindII GTYRAC 2 cut(s) 115, 398
HinfI GANTC 3 cut(s) 127, 245, 421
Hpy166II GTNNAC 3 cut(s) 106, 115, 398
Hpy188I TCNGA 3 cut(s) 190, 420, 452
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 3 cut(s) 106, 115, 398
HpyAV CCTTC 4 cut(s) 417, 423, 445, 524
HpyCH4III ACNGT 2 cut(s) 92, 239
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 7 cut(s) 30, 82, 171, 205, 235, 326, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 275
HpyF3I CTNAG 3 cut(s) 164, 468, 552
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 2 cut(s) 254, 269
Kzo9I GATC 2 cut(s) 140, 447
LpnPI CCDG 7 cut(s) 32, 59, 197, 393, 440, 455, 536
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 2 cut(s) 491, 541
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 472
MalI GATC 2 cut(s) 142, 449
MboI GATC 2 cut(s) 140, 447
MboII GAAGA 3 cut(s) 368, 430, 532
MluCI AATT 3 cut(s) 318, 359, 462
MlyI GAGTC 1 cut(s) 415
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 3 cut(s) 103, 359, 483
MslI CAYNNNNRTG 2 cut(s) 176, 305
MspA1I CMGCKG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 266, 275
NcoI CCATGG 1 cut(s) 250
NdeII GATC 2 cut(s) 140, 447
NlaIII CATG 2 cut(s) 254, 269
NspI RCATGY 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 2 cut(s) 127, 245
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspPI GGNCC 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 278
RseI CAYNNNNRTG 2 cut(s) 176, 305
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 2 cut(s) 140, 447
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 1 cut(s) 47
SfaNI GCATC 2 cut(s) 491, 541
SfcI CTRYAG 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 176, 305
Sse9I AATT 3 cut(s) 318, 359, 462
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 92, 239
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 427
TasI AATT 3 cut(s) 318, 359, 462
TfiI GAWTC 2 cut(s) 127, 245
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 3 cut(s) 430, 474, 506
XapI RAATTY 1 cut(s) 462
XceI RCATGY 1 cut(s) 269
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.