MD03G1069100.v1.1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
5660090 .. 5663167
3078 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1069100.v1.1.491

Sequence Viewer

Length: 957 bp
ATGGCAATGAGGTTACAGTCACTGCTGTTGGGTGTGCTACTACTAATTGGCTTTGCAGCGGCAGATGGTAAAACTACTGCTGTTATACCTAGTCGTTATAGCAGTGCTTCCCTGAACAGAAGCAGTTTTCCATCAGGCTTTGTATTTGGTTCAGCTTCAGCATCTTACCAAGTTTGTGTTTCTGCACTTAATAAGTTTATGAAGGTGCATGGAATGAAGGTGGTAAAGGACCAAGCATATATATGGGATAACTTCACCCACCAGTATCCAGAAAAAATCAGTGATGGAAGCAATGGGGACGTGGCTGATGATCAATACCACCGCTATAAGGAAGATGTAAAGATTATGAAGGATATGGGATTGGATGCTTATCGGTTCTCTATCTCATGGTCCAGATTGTTACCAAATGGAAAGCTAAGTGGGGGTGTGAACAAGGAAGGAGTACAATACTACAACAATCTCATCAATGAACTCCTAAACAAAGGTGTAACGCCATATGCGACAATCTTTCATTGGGATCTTCCTCAAGCTTTAGAAGAAGAATACGGTGGTTTCTTAAATCGTCAAATTGTGTTTATGGAGCCAATGACAAGAGGCCAATATCCAAACAGTATGCAAGTTCTTGTTAAAGAAAGATTACCTAAATTTACAGAAGAAGAATCCAAGTTCATAAAAGGGTCATTTGATTTTGTTGGAATGAATTATTATACTACTCACTATTCAAGAGATCAACCTCATAATAATTCTGCAAATGCAAGCTACTTGACCGATACTCGCGTTTTTGAATCAACCGAGCTTAATGGAGTCCCCCTTGGTCCTCCGGGATACTTTTCATGGTCATTGTTGGACAATTTTGAATGGGATTCTGGATACACCGTACGATTTGGTTTCATCTATATATATTACAATGATGGACTTAAGAGGCACCCAAAACTCTTAGCAAGCTGGTTCAAATAA

Protein Analysis

319

Amino Acids

36.27

Weight (kDa)

7.06

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 41 - 191 1.3e-51 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 192 - 254 7.2e-12 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 275 - 318 2.5e-10 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 924
AccII CGCG 1 cut(s) 777
AciI CCGC 2 cut(s) 59, 322
AclWI GGATC 1 cut(s) 525
AcsI RAATTY 1 cut(s) 644
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 2 cut(s) 444, 879
AfiI CCNNNNNNNGG 1 cut(s) 328
AflII CTTAAG 1 cut(s) 917
AgsI TTSAA 4 cut(s) 723, 785, 857, 952
AjiI CACGTC 1 cut(s) 301
AluBI AGCT 6 cut(s) 155, 415, 530, 759, 796, 945
AluI AGCT 6 cut(s) 155, 415, 530, 759, 796, 945
AlwI GGATC 1 cut(s) 525
AlwNI CAGNNNCTG 1 cut(s) 22
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 644
AspS9I GGNCC 3 cut(s) 229, 390, 815
AsuC2I CCSGG 1 cut(s) 822
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 3 cut(s) 229, 390, 815
BaeI ACNNNNGTAYC 2 cut(s) 762, 795
BanI GGYRCC 1 cut(s) 924
BbvI GCAGC 1 cut(s) 68
BccI CCATC 4 cut(s) 59, 139, 278, 905
BciVI GTATCC 3 cut(s) 276, 818, 863
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 1 cut(s) 822
BfaI CTAG 1 cut(s) 90
BfrI CTTAAG 1 cut(s) 917
BfuI GTATCC 3 cut(s) 276, 818, 863
BisI GCNGC 2 cut(s) 57, 60
BlsI GCNGC 2 cut(s) 58, 61
Bme1390I CCNGG 1 cut(s) 822
Bme18I GGWCC 3 cut(s) 229, 390, 815
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 3 cut(s) 229, 390, 815
BmiI GGNNCC 2 cut(s) 582, 926
BmrFI CCNGG 1 cut(s) 822
BmsI GCATC 2 cut(s) 170, 355
BpuEI CTTGAG 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 822
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 811
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 2 cut(s) 12, 298
Bse8I GATNNNNATC 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 811
BseGI GGATG 1 cut(s) 370
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 2 cut(s) 12, 298
BseNI ACTGG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 777
BshFI GGCC 1 cut(s) 597
BshNI GGYRCC 1 cut(s) 924
BsiSI CCGG 1 cut(s) 821
BsiWI CGTACG 1 cut(s) 877
BslFI GGGAC 2 cut(s) 311, 791
BslI CCNNNNNNNGG 1 cut(s) 328
BsmFI GGGAC 2 cut(s) 311, 791
BsnI GGCC 1 cut(s) 597
Bsp143I GATC 3 cut(s) 310, 517, 727
BspACI CCGC 2 cut(s) 59, 322
BspANI GGCC 1 cut(s) 597
BspFNI CGCG 1 cut(s) 777
BspLI GGNNCC 2 cut(s) 582, 926
BspPI GGATC 1 cut(s) 525
BspT107I GGYRCC 1 cut(s) 924
BspTI CTTAAG 1 cut(s) 917
BsrDI GCAATG 2 cut(s) 12, 298
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 811
BssMI GATC 3 cut(s) 310, 517, 727
BssT1I CCWWGG 1 cut(s) 811
Bst4CI ACNGT 4 cut(s) 18, 548, 611, 877
BstAFI CTTAAG 1 cut(s) 917
BstC8I GCNNGC 2 cut(s) 757, 943
BstDEI CTNAG 2 cut(s) 416, 937
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 777
BstKTI GATC 3 cut(s) 313, 520, 730
BstMBI GATC 3 cut(s) 310, 517, 727
BstSCI CCNGG 1 cut(s) 820
BstUI CGCG 1 cut(s) 777
BstV1I GCAGC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BsuI GTATCC 3 cut(s) 276, 818, 863
BsuRI GGCC 1 cut(s) 597
BtrI CACGTC 1 cut(s) 301
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 2 cut(s) 20, 109
BtsIMutI CAGTG 3 cut(s) 20, 109, 286
Cac8I GCNNGC 2 cut(s) 757, 943
CaiI CAGNNNCTG 1 cut(s) 22
Cfr13I GGNCC 3 cut(s) 229, 390, 815
Csp6I GTAC 2 cut(s) 443, 878
CviAII CATG 3 cut(s) 209, 387, 834
CviQI GTAC 2 cut(s) 443, 878
DdeI CTNAG 2 cut(s) 416, 937
DpnI GATC 3 cut(s) 312, 519, 729
DpnII GATC 3 cut(s) 310, 517, 727
Eco130I CCWWGG 1 cut(s) 811
Eco47I GGWCC 3 cut(s) 229, 390, 815
Eco57I CTGAAG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 811
FaeI CATG 3 cut(s) 212, 390, 837
FaqI GGGAC 2 cut(s) 311, 791
FatI CATG 3 cut(s) 208, 386, 833
FauNDI CATATG 1 cut(s) 496
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 57, 60
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 57, 60
FspBI CTAG 1 cut(s) 90
GluI GCNGC 2 cut(s) 57, 60
HaeIII GGCC 1 cut(s) 597
HapII CCGG 1 cut(s) 821
Hin1II CATG 3 cut(s) 212, 390, 837
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 4 cut(s) 659, 785, 804, 863
HpaII CCGG 1 cut(s) 821
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 430
Hpy188III TCNNGA 4 cut(s) 269, 393, 723, 867
Hpy8I GTNNAC 1 cut(s) 430
HpyAV CCTTC 4 cut(s) 196, 211, 343, 431
HpyCH4III ACNGT 4 cut(s) 18, 548, 611, 877
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 6 cut(s) 56, 185, 208, 616, 749, 755
HpyF3I CTNAG 2 cut(s) 416, 937
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 3 cut(s) 212, 390, 837
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 3 cut(s) 310, 517, 727
LmnI GCTCC 1 cut(s) 580
LpnPI CCDG 8 cut(s) 120, 125, 275, 282, 406, 834, 852, 931
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 170, 355
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 4 cut(s) 12, 18, 399, 487
MalI GATC 3 cut(s) 312, 519, 729
MboI GATC 3 cut(s) 310, 517, 727
MboII GAAGA 6 cut(s) 344, 512, 548, 551, 665, 668
MflI RGATCY 1 cut(s) 517
MluCI AATT 6 cut(s) 45, 567, 644, 700, 742, 850
MlyI GAGTC 1 cut(s) 813
MmeI TCCRAC 2 cut(s) 673, 825
MnlI CCTC 6 cut(s) 3, 534, 587, 744, 828, 915
MseI TTAA 5 cut(s) 189, 557, 627, 798, 918
MslI CAYNNNNRTG 1 cut(s) 241
MspA1I CMGCKG 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 917
MspI CCGG 1 cut(s) 821
MspR9I CCNGG 1 cut(s) 822
MvnI CGCG 1 cut(s) 777
NciI CCSGG 1 cut(s) 822
NdeI CATATG 1 cut(s) 496
NdeII GATC 3 cut(s) 310, 517, 727
NlaIII CATG 3 cut(s) 212, 390, 837
NlaIV GGNNCC 2 cut(s) 582, 926
NmuCI GTSAC 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 497
PfeI GAWTC 3 cut(s) 659, 785, 863
Pfl23II CGTACG 1 cut(s) 877
PfoI TCCNGGA 1 cut(s) 820
PkrI GCNGC 2 cut(s) 58, 61
PleI GAGTC 1 cut(s) 812
PpsI GAGTC 1 cut(s) 812
PspLI CGTACG 1 cut(s) 877
PspN4I GGNNCC 2 cut(s) 582, 926
PspPI GGNCC 3 cut(s) 229, 390, 815
PstNI CAGNNNCTG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 517
RsaI GTAC 2 cut(s) 444, 879
RsaNI GTAC 2 cut(s) 443, 878
RseI CAYNNNNRTG 1 cut(s) 241
SaqAI TTAA 5 cut(s) 189, 557, 627, 798, 918
SatI GCNGC 2 cut(s) 57, 60
Sau3AI GATC 3 cut(s) 310, 517, 727
Sau96I GGNCC 3 cut(s) 229, 390, 815
SchI GAGTC 1 cut(s) 813
ScrFI CCNGG 1 cut(s) 822
SfaNI GCATC 2 cut(s) 170, 355
SinI GGWCC 3 cut(s) 229, 390, 815
SmiMI CAYNNNNRTG 1 cut(s) 241
SmlI CTYRAG 2 cut(s) 525, 917
SmoI CTYRAG 2 cut(s) 525, 917
Sse9I AATT 6 cut(s) 45, 567, 644, 700, 742, 850
SsiI CCGC 2 cut(s) 59, 322
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 820
StyI CCWWGG 1 cut(s) 811
TaaI ACNGT 4 cut(s) 18, 548, 611, 877
TaiI ACGT 1 cut(s) 303
TaqII GACCGA 1 cut(s) 782
TasI AATT 6 cut(s) 45, 567, 644, 700, 742, 850
TatI WGTACW 1 cut(s) 442
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 3 cut(s) 659, 785, 863
Tru1I TTAA 5 cut(s) 189, 557, 627, 798, 918
Tru9I TTAA 5 cut(s) 189, 557, 627, 798, 918
TscAI CASTG 3 cut(s) 27, 109, 286
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 9 cut(s) 215, 230, 362, 483, 500, 658, 713, 822, 880
TspRI CASTG 3 cut(s) 27, 109, 286
Vha464I CTTAAG 1 cut(s) 917
VpaK11BI GGWCC 3 cut(s) 229, 390, 815
XapI RAATTY 1 cut(s) 644
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.