MD05G1114800.v1.1

beta-glucosidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000117
Physical Location & Seq
Reverse (-)
23428865 .. 23430611
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1114800.v1.1.491

Sequence Viewer

Length: 774 bp
ATGTGTATCTACAACGATCATTTTAAAGACTATGCGGAACTTTGTTATAAGGAATTTGGTGATCCAGTAAAGCACTGGTTCACGGTAAATGAGCCATATACTTTTAGTAACATGGGTTATGCTGTTGGTGCTCATGCACGGGGACGATGCTCTTCTTGGCAAAACCTAAACTGCACCGGTGGAGATTCAGCCATTGAACCATACTTGGTGACACACCACATTCTTCTTGCTCATGGAGCAGCTGTAGAATTGTACAAAAATAGATATCAGGCAACTCAAAAAGGCTTGATAGGGATAACATTGGTGCCTTACGATCTTTGGATTTTATGTTTGGATGGCAAGTTTTTGGACCCATTAACAAGTGGTGACTATCCACACACCATGCGATCAATTGTTGGGAAAAGATTACCCAAATTCACAAATGAACAATCCAAGTTGCTAAACGGATCATTTGACTTTCTTGGAATAAATTATTATACCGCTAGATACACAAGTGTATCAGAGTTGAATAATCCAGAACTATCACTTGAAAAGGCCCTTCATGATACCAGTAGAATTGACTACTACTATCGTCACATGTGTTACCTTCAAGTGGTGATCAAAAATGGTGCGAAAGTGAAGGGATACTTTCCATGGACATTGTTAGACAACTTTGATTGGAGTTCTGGATACACTATCCGATTTGGTTTAAACTACGTGGATTATAACGATGGGCTGAAAAGACACCCAAAACTCTCAGCACATTGGTTCAAAAATTTGCTTAAGAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

258

Amino Acids

29.73

Weight (kDa)

8.57

Isoelectric Point (pI)

22.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 6 - 171 9.5e-30 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 177 - 257 8.9e-24 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 48, 705
AccB1I GGYRCC 1 cut(s) 304
AciI CCGC 2 cut(s) 35, 480
AclWI GGATC 2 cut(s) 56, 454
AcsI RAATTY 3 cut(s) 53, 413, 754
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 592
AflII CTTAAG 1 cut(s) 761
AflIII ACRYGT 1 cut(s) 576
AgeI ACCGGT 1 cut(s) 176
AgsI TTSAA 5 cut(s) 197, 508, 530, 590, 751
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 133
AlwI GGATC 2 cut(s) 56, 454
AoxI GGCC 1 cut(s) 534
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 3 cut(s) 53, 413, 754
AsiGI ACCGGT 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 349, 535
AsuHPI GGTGA 4 cut(s) 71, 220, 377, 607
AvaII GGWCC 1 cut(s) 349
BaeI ACNNNNGTAYC 4 cut(s) 478, 480, 511, 513
BanI GGYRCC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 251
BccI CCATC 2 cut(s) 329, 704
BciVI GTATCC 2 cut(s) 617, 662
BclI TGATCA 1 cut(s) 597
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 1 cut(s) 243
BfrI CTTAAG 1 cut(s) 761
BfuI GTATCC 2 cut(s) 617, 662
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 349, 535
BmiI GGNNCC 2 cut(s) 306, 351
BmsI GCATC 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 697
BsaJI CCNNGG 1 cut(s) 632
BsaWI WCCGGW 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 592
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 3 cut(s) 65, 80, 549
BseDI CCNNGG 1 cut(s) 632
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 592
BseMII CTCAG 1 cut(s) 750
BseNI ACTGG 3 cut(s) 65, 80, 549
BseXI GCAGC 1 cut(s) 251
BsgI GTGCAG 1 cut(s) 157
BshFI GGCC 1 cut(s) 536
BshNI GGYRCC 1 cut(s) 304
BshTI ACCGGT 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 6 cut(s) 16, 61, 313, 386, 446, 597
Bsp19I CCATGG 1 cut(s) 632
BspACI CCGC 2 cut(s) 35, 480
BspANI GGCC 1 cut(s) 536
BspCNI CTCAG 1 cut(s) 749
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 306, 351
BspPI GGATC 2 cut(s) 56, 454
BspQI GCTCTTC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 304
BspTI CTTAAG 1 cut(s) 761
BsrFI RCCGGY 1 cut(s) 176
BsrGI TGTACA 1 cut(s) 252
BsrI ACTGG 3 cut(s) 65, 80, 549
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 632
BssMI GATC 6 cut(s) 16, 61, 313, 386, 446, 597
BssT1I CCWWGG 1 cut(s) 632
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 157
BstAFI CTTAAG 1 cut(s) 761
BstAUI TGTACA 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 697
BstDEI CTNAG 1 cut(s) 736
BstDSI CCRYGG 1 cut(s) 632
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 6 cut(s) 19, 64, 316, 389, 449, 600
BstMBI GATC 6 cut(s) 16, 61, 313, 386, 446, 597
BstMWI GCNNNNNNNGC 2 cut(s) 128, 236
BstNSI RCATGY 1 cut(s) 580
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 251
BsuI GTATCC 2 cut(s) 617, 662
BsuRI GGCC 1 cut(s) 536
BtgI CCRYGG 1 cut(s) 632
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 73
CciI TCATGA 1 cut(s) 541
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 349, 535
Csp6I GTAC 1 cut(s) 253
CspAI ACCGGT 1 cut(s) 176
CviAII CATG 7 cut(s) 112, 134, 233, 382, 542, 577, 633
CviJI RGCY 6 cut(s) 94, 191, 242, 285, 536, 715
CviKI_1 RGCY 6 cut(s) 94, 191, 242, 285, 536, 715
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 736
DpnI GATC 6 cut(s) 18, 63, 315, 388, 448, 599
DpnII GATC 6 cut(s) 16, 61, 313, 386, 446, 597
DraI TTTAAA 2 cut(s) 25, 690
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 632
Eco32I GATATC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 535
EcoRV GATATC 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 632
ErhI CCWWGG 1 cut(s) 632
FaeI CATG 7 cut(s) 115, 137, 236, 385, 545, 580, 636
FalI AAGNNNNNCTT 2 cut(s) 611, 643
FaqI GGGAC 1 cut(s) 156
FatI CATG 7 cut(s) 111, 133, 232, 381, 541, 576, 632
FbaI TGATCA 1 cut(s) 597
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 483
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 536
HapII CCGG 1 cut(s) 177
Hin1II CATG 7 cut(s) 115, 137, 236, 385, 545, 580, 636
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 177
HphI GGTGA 4 cut(s) 71, 220, 377, 607
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 2 cut(s) 502, 680
Hpy188III TCNNGA 3 cut(s) 515, 542, 666
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 3 cut(s) 548, 596, 613
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 696
HpyCH4V TGCA 2 cut(s) 137, 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 236
HpyF3I CTNAG 1 cut(s) 736
HpySE526I ACGT 1 cut(s) 696
Hsp92II CATG 7 cut(s) 115, 137, 236, 385, 545, 580, 636
Ksp22I TGATCA 1 cut(s) 597
Kzo9I GATC 6 cut(s) 16, 61, 313, 386, 446, 597
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 7 cut(s) 61, 78, 190, 254, 528, 562, 651
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 137
MaeI CTAG 1 cut(s) 483
MaeII ACGT 1 cut(s) 696
MaeIII GTNAC 5 cut(s) 107, 208, 365, 572, 581
MalI GATC 6 cut(s) 18, 63, 315, 388, 448, 599
MboI GATC 6 cut(s) 16, 61, 313, 386, 446, 597
MboII GAAGA 2 cut(s) 144, 215
MfeI CAATTG 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 8 cut(s) 53, 248, 390, 413, 469, 555, 754, 769
MseI TTAA 4 cut(s) 24, 356, 689, 762
MspA1I CMGCKG 1 cut(s) 242
MspCI CTTAAG 1 cut(s) 761
MspI CCGG 1 cut(s) 177
MssI GTTTAAAC 1 cut(s) 690
MunI CAATTG 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 128, 236
NcoI CCATGG 1 cut(s) 632
NdeII GATC 6 cut(s) 16, 61, 313, 386, 446, 597
NlaIII CATG 7 cut(s) 115, 137, 236, 385, 545, 580, 636
NlaIV GGNNCC 2 cut(s) 306, 351
NmuCI GTSAC 3 cut(s) 208, 365, 572
NspI RCATGY 1 cut(s) 580
PagI TCATGA 1 cut(s) 541
PciI ACATGT 1 cut(s) 576
PciSI GCTCTTC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 185
PinAI ACCGGT 1 cut(s) 176
PkrI GCNGC 1 cut(s) 241
PmeI GTTTAAAC 1 cut(s) 690
Ppu21I YACGTR 1 cut(s) 697
PscI ACATGT 1 cut(s) 576
PsiI TTATAA 2 cut(s) 48, 705
PspN4I GGNNCC 2 cut(s) 306, 351
PspPI GGNCC 2 cut(s) 349, 535
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 4 cut(s) 24, 356, 689, 762
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 6 cut(s) 16, 61, 313, 386, 446, 597
Sau96I GGNCC 2 cut(s) 349, 535
SduI GDGCHC 1 cut(s) 133
SetI ASST 4 cut(s) 168, 244, 588, 699
SfaNI GCATC 1 cut(s) 137
SfcI CTRYAG 1 cut(s) 243
SgrAI CRCCGGYG 1 cut(s) 176
SinI GGWCC 1 cut(s) 349
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 8 cut(s) 53, 248, 390, 413, 469, 555, 754, 769
SsiI CCGC 2 cut(s) 35, 480
SspMI CTAG 1 cut(s) 483
StyI CCWWGG 1 cut(s) 632
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 699
TasI AATT 8 cut(s) 53, 248, 390, 413, 469, 555, 754, 769
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 4 cut(s) 24, 356, 689, 762
Tru9I TTAA 4 cut(s) 24, 356, 689, 762
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 3 cut(s) 208, 365, 572
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 3 cut(s) 208, 365, 572
TspDTI ATGAA 2 cut(s) 438, 530
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 80
Vha464I CTTAAG 1 cut(s) 761
VpaK11BI GGWCC 1 cut(s) 349
XapI RAATTY 3 cut(s) 53, 413, 754
XceI RCATGY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 72
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.