MD05G1106100.v1.1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
21961561 .. 21963753
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1106100.v1.1.491

Sequence Viewer

Length: 1020 bp
ATGCACGATCTTTGCTTTTTGGATCCACTTGTTATAGCAATGAAATATTCACGATCATTGACAAATGGCAAAGCTACTAATACGGATCCACCTGTTCATTGCGAATTTCTCAATCACCGCAATTTTGAAGCAGGTTTCATTTTTGGCACAGGTTCCGCATCTTACCAGTATGAAGGTGCAGTAAAAGAAGATGGAAGAGGACCAAGCATATGGGATACCTACACCCACAAACATCCAGATGTGGGGATTATGAAGGATATGGAGTTGAATGCTTACAGATTCTCTATTTCATGGTCCAGATTATTACCAAATGGATCGTTAAGTGGTGGTGTTAACAGGAAAGGAATTGATTATTACAACAATGTCATCAATGAACTCCTACGCAATGGTATAAAGCCGTTTGTAACACTCTTTCATTGGGATGTTCCCCAAGCTTTAGAAGATGAATATGGTGGTTTCTTAAGCCCTCACCATGCAGAACTTTGTTATAAGGAATTTGGTGATCGAGTCAAGCACTTGTTCACAATAAATGATCCATATACTTTTAGTAACATGGGTTATGCTGTTGGGACTCAAGCACCGGGACGCTGCTCTTCTTGGCAAAACCGAAACTGCACTGGTGGAGATTTAGCAATTGAACCATCCTTGGTGACACACCACATTCTTCTTGCTCATGGAGTAGCTGTAGAATTGTATAAGAATAGATATCAGGCATCTCATAATGGCTTAATATGGATAACATTGGTGTCACATTGGTTTGAGCCTGCTTCGGAGTCAAAGCAGATAAAGATGCTGCTTTACGATCTTTGGATTTTATGTTTGGATGGCAAGTTTTTGGACCCATTAACAAGTGGTGACTATCCACACACCATGCGATCAATTGTTGGAAAAAGACTGCCAAAATTCACAAAAGAACAATCCAAGTTGCTAAACGGATCATTTGATTTTCTTGGAATAAATTATTATACTGCTAGATACACATCTAGTACACCTAAGAACAATTCACAACAGGCTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

340

Amino Acids

38.41

Weight (kDa)

6.94

Isoelectric Point (pI)

30.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 40 - 77 2.6e-11 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 79 - 336 2.7e-67 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
Acc36I ACCTGC 1 cut(s) 122
AciI CCGC 2 cut(s) 118, 156
AclWI GGATC 7 cut(s) 17, 30, 80, 93, 322, 527, 943
AcsI RAATTY 3 cut(s) 104, 494, 902
AfaI GTAC 1 cut(s) 988
AfiI CCNNNNNNNGG 1 cut(s) 242
AflII CTTAAG 1 cut(s) 460
AgsI TTSAA 3 cut(s) 128, 268, 638
AluBI AGCT 3 cut(s) 74, 434, 683
AluI AGCT 3 cut(s) 74, 434, 683
AlwI GGATC 7 cut(s) 17, 30, 80, 93, 322, 527, 943
ApeKI GCWGC 2 cut(s) 588, 793
ApoI RAATTY 3 cut(s) 104, 494, 902
AspS9I GGNCC 3 cut(s) 200, 294, 838
AsuC2I CCSGG 1 cut(s) 582
AsuHPI GGTGA 5 cut(s) 107, 461, 512, 661, 866
AvaII GGWCC 3 cut(s) 200, 294, 838
BamHI GGATCC 2 cut(s) 22, 85
BbvI GCAGC 2 cut(s) 575, 780
BccI CCATC 3 cut(s) 185, 649, 818
BceAI ACGGC 1 cut(s) 382
BciVI GTATCC 1 cut(s) 208
BcnI CCSGG 1 cut(s) 582
BfaI CTAG 2 cut(s) 972, 984
BfmI CTRYAG 1 cut(s) 684
BfrI CTTAAG 1 cut(s) 460
BfuAI ACCTGC 1 cut(s) 122
BfuI GTATCC 1 cut(s) 208
BisI GCNGC 2 cut(s) 589, 794
BlsI GCNGC 2 cut(s) 590, 795
Bme1390I CCNGG 1 cut(s) 582
Bme18I GGWCC 3 cut(s) 200, 294, 838
BmgT120I GGNCC 3 cut(s) 200, 294, 838
BmiI GGNNCC 4 cut(s) 24, 87, 154, 840
BmrFI CCNGG 1 cut(s) 582
BmsI GCATC 3 cut(s) 167, 722, 780
BpuEI CTTGAG 1 cut(s) 558
BpuMI CCSGG 1 cut(s) 582
BsaAI YACGTR 1 cut(s) 1017
BsaBI GATNNNNATC 1 cut(s) 979
BsaJI CCNNGG 1 cut(s) 645
BsaXI ACNNNNNCTCC 2 cut(s) 669, 699
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 166, 622
Bse3DI GCAATG 3 cut(s) 45, 97, 391
Bse8I GATNNNNATC 1 cut(s) 979
BseDI CCNNGG 1 cut(s) 645
BseGI GGATG 4 cut(s) 232, 427, 641, 829
BseJI GATNNNNATC 1 cut(s) 979
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 3 cut(s) 45, 97, 391
BseNI ACTGG 2 cut(s) 166, 622
BseXI GCAGC 2 cut(s) 575, 780
BsgI GTGCAG 2 cut(s) 198, 598
BsiSI CCGG 1 cut(s) 581
BslFI GGGAC 2 cut(s) 583, 597
BslI CCNNNNNNNGG 1 cut(s) 242
BsmFI GGGAC 2 cut(s) 583, 597
BsmI GAATGC 1 cut(s) 274
BspACI CCGC 2 cut(s) 118, 156
BspLI GGNNCC 4 cut(s) 24, 87, 154, 840
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 7 cut(s) 17, 30, 80, 93, 322, 527, 943
BspQI GCTCTTC 1 cut(s) 598
BspTI CTTAAG 1 cut(s) 460
BsrDI GCAATG 3 cut(s) 45, 97, 391
BsrI ACTGG 2 cut(s) 166, 622
BssECI CCNNGG 1 cut(s) 645
BssT1I CCWWGG 1 cut(s) 645
Bst6I CTCTTC 2 cut(s) 190, 598
BstAFI CTTAAG 1 cut(s) 460
BstBAI YACGTR 1 cut(s) 1017
BstC8I GCNNGC 1 cut(s) 765
BstDEI CTNAG 1 cut(s) 993
BstF5I GGATG 4 cut(s) 232, 427, 641, 829
BstSCI CCNGG 1 cut(s) 580
BstSFI CTRYAG 1 cut(s) 684
BstSNI TACGTA 1 cut(s) 1017
BstV1I GCAGC 2 cut(s) 575, 780
BstX2I RGATCY 2 cut(s) 22, 85
BstXI CCANNNNNNTGG 1 cut(s) 210
BstYI RGATCY 2 cut(s) 22, 85
BsuI GTATCC 1 cut(s) 208
BtsCI GGATG 4 cut(s) 232, 427, 641, 829
BtsIMutI CAGTG 1 cut(s) 615
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 765
Cfr13I GGNCC 3 cut(s) 200, 294, 838
CseI GACGC 1 cut(s) 594
Csp6I GTAC 1 cut(s) 987
CviAII CATG 5 cut(s) 291, 473, 553, 674, 871
CviJI RGCY 8 cut(s) 74, 397, 434, 465, 683, 726, 763, 1013
CviKI_1 RGCY 8 cut(s) 74, 397, 434, 465, 683, 726, 763, 1013
CviQI GTAC 1 cut(s) 987
DdeI CTNAG 1 cut(s) 993
Eam1104I CTCTTC 2 cut(s) 190, 598
EarI CTCTTC 2 cut(s) 190, 598
Eco105I TACGTA 1 cut(s) 1017
Eco130I CCWWGG 1 cut(s) 645
Eco32I GATATC 1 cut(s) 707
Eco47I GGWCC 3 cut(s) 200, 294, 838
EcoRV GATATC 1 cut(s) 707
EcoT14I CCWWGG 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 5 cut(s) 294, 476, 556, 677, 874
FaqI GGGAC 2 cut(s) 583, 597
FatI CATG 5 cut(s) 290, 472, 552, 673, 870
FauNDI CATATG 1 cut(s) 209
Fnu4HI GCNGC 2 cut(s) 589, 794
FokI GGATG 4 cut(s) 219, 434, 628, 836
Fsp4HI GCNGC 2 cut(s) 589, 794
FspBI CTAG 2 cut(s) 972, 984
GluI GCNGC 2 cut(s) 589, 794
HapII CCGG 1 cut(s) 581
HgaI GACGC 1 cut(s) 594
Hin1II CATG 5 cut(s) 294, 476, 556, 677, 874
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 4 cut(s) 279, 507, 571, 773
HpaI GTTAAC 1 cut(s) 334
HpaII CCGG 1 cut(s) 581
HphI GGTGA 5 cut(s) 107, 461, 512, 661, 866
Hpy166II GTNNAC 3 cut(s) 334, 522, 989
Hpy188I TCNGA 1 cut(s) 772
Hpy188III TCNNGA 3 cut(s) 51, 236, 297
Hpy8I GTNNAC 3 cut(s) 334, 522, 989
HpyAV CCTTC 2 cut(s) 167, 247
HpyCH4IV ACGT 1 cut(s) 1016
HpyCH4V TGCA 4 cut(s) 4, 179, 476, 615
HpyF3I CTNAG 1 cut(s) 993
HpySE526I ACGT 1 cut(s) 1016
Hsp92II CATG 5 cut(s) 294, 476, 556, 677, 874
KspAI GTTAAC 1 cut(s) 334
LguI GCTCTTC 1 cut(s) 598
Lsp1109I GCAGC 2 cut(s) 575, 780
LweI GCATC 3 cut(s) 167, 722, 780
MaeI CTAG 2 cut(s) 972, 984
MaeII ACGT 1 cut(s) 1016
MaeIII GTNAC 5 cut(s) 403, 548, 649, 747, 854
MboII GAAGA 5 cut(s) 200, 207, 452, 585, 656
MfeI CAATTG 2 cut(s) 633, 879
MflI RGATCY 2 cut(s) 22, 85
MlyI GAGTC 3 cut(s) 516, 565, 782
MmeI TCCRAC 1 cut(s) 865
MnlI CCTC 2 cut(s) 191, 477
MseI TTAA 5 cut(s) 320, 333, 461, 728, 845
MslI CAYNNNNRTG 2 cut(s) 237, 420
MspCI CTTAAG 1 cut(s) 460
MspI CCGG 1 cut(s) 581
MspR9I CCNGG 1 cut(s) 582
MunI CAATTG 2 cut(s) 633, 879
Mva1269I GAATGC 1 cut(s) 274
NciI CCSGG 1 cut(s) 582
NdeI CATATG 1 cut(s) 209
NlaIII CATG 5 cut(s) 294, 476, 556, 677, 874
NlaIV GGNNCC 4 cut(s) 24, 87, 154, 840
NmuCI GTSAC 3 cut(s) 649, 747, 854
PciSI GCTCTTC 1 cut(s) 598
PctI GAATGC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 279
PkrI GCNGC 2 cut(s) 590, 795
PleI GAGTC 3 cut(s) 515, 565, 781
PpsI GAGTC 3 cut(s) 515, 565, 781
Ppu21I YACGTR 1 cut(s) 1017
PsiI TTATAA 1 cut(s) 489
PspN4I GGNNCC 4 cut(s) 24, 87, 154, 840
PspPI GGNCC 3 cut(s) 200, 294, 838
PsuI RGATCY 2 cut(s) 22, 85
RsaI GTAC 1 cut(s) 988
RsaNI GTAC 1 cut(s) 987
RseI CAYNNNNRTG 2 cut(s) 237, 420
SapI GCTCTTC 1 cut(s) 598
SaqAI TTAA 5 cut(s) 320, 333, 461, 728, 845
SatI GCNGC 2 cut(s) 589, 794
Sau96I GGNCC 3 cut(s) 200, 294, 838
SchI GAGTC 3 cut(s) 516, 565, 782
ScrFI CCNGG 1 cut(s) 582
SfaNI GCATC 3 cut(s) 167, 722, 780
SfcI CTRYAG 1 cut(s) 684
SinI GGWCC 3 cut(s) 200, 294, 838
SmiMI CAYNNNNRTG 2 cut(s) 237, 420
SmlI CTYRAG 2 cut(s) 460, 573
SmoI CTYRAG 2 cut(s) 460, 573
SnaBI TACGTA 1 cut(s) 1017
SsiI CCGC 2 cut(s) 118, 156
SspI AATATT 1 cut(s) 47
SspMI CTAG 2 cut(s) 972, 984
StyD4I CCNGG 1 cut(s) 580
StyI CCWWGG 1 cut(s) 645
TaiI ACGT 1 cut(s) 1019
TaqI TCGA 1 cut(s) 505
TatI WGTACW 1 cut(s) 986
TfiI GAWTC 1 cut(s) 279
Tru1I TTAA 5 cut(s) 320, 333, 461, 728, 845
Tru9I TTAA 5 cut(s) 320, 333, 461, 728, 845
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 3 cut(s) 649, 747, 854
TseI GCWGC 2 cut(s) 588, 793
Tsp45I GTSAC 3 cut(s) 649, 747, 854
TspDTI ATGAA 9 cut(s) 56, 86, 127, 186, 266, 279, 387, 404, 459
TspGWI ACGGA 2 cut(s) 98, 948
TspRI CASTG 1 cut(s) 622
Vha464I CTTAAG 1 cut(s) 460
VpaK11BI GGWCC 3 cut(s) 200, 294, 838
XapI RAATTY 3 cut(s) 104, 494, 902
XspI CTAG 2 cut(s) 972, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.