Rorug05G0457700

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
63059573 .. 63061059
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0457700.1

Sequence Viewer

Length: 351 bp
ATGAGGAAGTTCGATCCATGGCCGATTTTCTTCAAGCGAGAATGGAACCGGAACTGGCCTTTCATCGCTGGGTTCGCCATAACCGGAGCCCTCATCACCAAGTTCTCTCTCGGCCTCACTGAGGAAGATGCCAAGAACTCACCCTTCGTTCAGAGGCACAAGAGGTACCTTTTCATTCTTATCTCAGAACTCAAATATACACTCGTTGTTATTCGATTGCAATATAATGATTCTCTGGTGATTTCTGGATGCCGTTGCGACTACCTTTCTTCTCATGTTGTGAAGGGGAAGATAATAACAAAGAGTGATGTTCAGGATTCTCTGTTTTTGAATTTTATGTCTTGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

13.59

Weight (kDa)

9.44

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AclWI GGATC 1 cut(s) 8
AcoI YGGCCR 1 cut(s) 20
AcsI RAATTY 1 cut(s) 331
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 2 cut(s) 34, 331
AlwI GGATC 1 cut(s) 8
AoxI GGCC 3 cut(s) 20, 56, 112
ApoI RAATTY 1 cut(s) 331
Asp718I GGTACC 1 cut(s) 165
AsuHPI GGTGA 3 cut(s) 88, 132, 250
BanI GGYRCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 237
BmiI GGNNCC 3 cut(s) 47, 88, 167
BmsI GCATC 2 cut(s) 118, 239
BsaJI CCNNGG 1 cut(s) 17
BsaWI WCCGGW 2 cut(s) 48, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 111, 198
BseNI ACTGG 1 cut(s) 59
BseYI CCCAGC 1 cut(s) 68
BshFI GGCC 3 cut(s) 22, 58, 114
BshNI GGYRCC 1 cut(s) 165
BsiSI CCGG 2 cut(s) 49, 84
BslI CCNNNNNNNGG 1 cut(s) 121
BsnI GGCC 3 cut(s) 22, 58, 114
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 13
Bsp19I CCATGG 1 cut(s) 17
BspANI GGCC 3 cut(s) 22, 58, 114
BspCNI CTCAG 2 cut(s) 112, 197
BspLI GGNNCC 3 cut(s) 47, 88, 167
BspPI GGATC 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 120, 184
BstDSI CCRYGG 1 cut(s) 17
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 254
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 74
BsuRI GGCC 3 cut(s) 22, 58, 114
BtgI CCRYGG 1 cut(s) 17
BtgZI GCGATG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 117
Csp6I GTAC 1 cut(s) 166
CviAII CATG 2 cut(s) 18, 275
CviJI RGCY 4 cut(s) 22, 58, 89, 114
CviKI_1 RGCY 4 cut(s) 22, 58, 89, 114
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 120, 184
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 2 cut(s) 21, 278
FaiI YATR 7 cut(s) 19, 80, 198, 225, 276, 338, 349
FatI CATG 2 cut(s) 17, 274
FokI GGATG 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 91
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 3 cut(s) 22, 58, 114
HapII CCGG 2 cut(s) 49, 84
Hin1II CATG 2 cut(s) 21, 278
HinfI GANTC 2 cut(s) 230, 317
HpaII CCGG 2 cut(s) 49, 84
HphI GGTGA 3 cut(s) 88, 132, 250
Hpy188I TCNGA 2 cut(s) 153, 187
Hpy188III TCNNGA 2 cut(s) 246, 314
HpyAV CCTTC 2 cut(s) 154, 277
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 120, 184
Hsp92II CATG 2 cut(s) 21, 278
KpnI GGTACC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 7 cut(s) 40, 54, 62, 97, 221, 231, 299
LweI GCATC 2 cut(s) 118, 239
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 4 cut(s) 22, 137, 261, 301
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 1 cut(s) 331
MnlI CCTC 5 cut(s) 101, 115, 125, 147, 156
MspI CCGG 2 cut(s) 49, 84
MwoI GCNNNNNNNGC 1 cut(s) 74
NcoI CCATGG 1 cut(s) 17
NdeII GATC 1 cut(s) 13
NlaIII CATG 2 cut(s) 21, 278
NlaIV GGNNCC 3 cut(s) 47, 88, 167
NmeAIII GCCGAG 1 cut(s) 90
PfeI GAWTC 2 cut(s) 230, 317
PspFI CCCAGC 1 cut(s) 68
PspN4I GGNNCC 3 cut(s) 47, 88, 167
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
Sau3AI GATC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 91
SetI ASST 3 cut(s) 167, 171, 267
SfaNI GCATC 2 cut(s) 118, 239
Sse9I AATT 1 cut(s) 331
StyI CCWWGG 1 cut(s) 17
TaqI TCGA 2 cut(s) 12, 214
TasI AATT 1 cut(s) 331
TfiI GAWTC 2 cut(s) 230, 317
TscAI CASTG 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 52, 163
TspRI CASTG 1 cut(s) 124
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.