RLG00000036745

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
84053462 .. 84055565
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036745

Sequence Viewer

Length: 603 bp
ATGACACAGTCATCCATGCTTGATTTACACGCCTGTGAAGCACTGGATGACTGGATCACATTCAATGAGCCAATTGCCCTCGCTGTGGCTGGTTATGGACTCGGGGCATTGGCACCAGGACGATGTTCCATTTGGATAAACCCCAACTGCACTGGAGGGAATTCAGCGACGGAGCTAGCTCTATATTTTATATTTGGATGGTACATGGACCCTTTGACAAATGGTGACTATCCTAAGAGCATGAGATCTCTTGTCAGAGACCGATTGCCTAAGTTCAAGAAAGAGCAATCCAAATTGCTGAAAGGGTCGTTTGACTTTATCGGATTGAACTATTACACTTCTAGCTATGTATCCGACACATCCCAGCTAGTGAAAGTCGCCTATGCAAGCTACATGACAGACTCTCTTGCGACTATGTCACCCCTTTGTAATGGAATCCCCATTGGTCCAAAGGCTGCCTCAGGGGGCCTCTATATTTATCCGAGCGGCATCAAGGATATTTTGCTCTACACAAAGAGAAAGTATAACAATCCACTTATTTATATCACAGAGAATGGTAAGCCTCTCAGTCATCATCTTTCAGAGCTAGTACTTGATATATAA

Protein Analysis

201

Amino Acids

22.09

Weight (kDa)

6.81

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 55 - 192 4.8e-24 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 112
AccBSI CCGCTC 1 cut(s) 486
AciI CCGC 1 cut(s) 486
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 160
AfaI GTAC 2 cut(s) 203, 591
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 3 cut(s) 64, 277, 328
AjnI CCWGG 1 cut(s) 115
AleI CACNNNNGTG 1 cut(s) 33
AluBI AGCT 6 cut(s) 175, 179, 345, 367, 390, 586
AluI AGCT 6 cut(s) 175, 179, 345, 367, 390, 586
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 1 cut(s) 466
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 1 cut(s) 160
AspS9I GGNCC 3 cut(s) 208, 446, 466
AsuHPI GGTGA 2 cut(s) 236, 411
AsuNHI GCTAGC 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 2 cut(s) 208, 446
AxyI CCTNAGG 1 cut(s) 460
BanI GGYRCC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 442
BccI CCATC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 117
BciVI GTATCC 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 4 cut(s) 176, 342, 368, 587
BfuI GTATCC 1 cut(s) 361
BglII AGATCT 1 cut(s) 245
BisI GCNGC 2 cut(s) 456, 487
BlsI GCNGC 2 cut(s) 457, 488
BmcAI AGTACT 1 cut(s) 591
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 208, 446
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 3 cut(s) 208, 446, 466
BmiI GGNNCC 3 cut(s) 114, 210, 467
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 498
BmtI GCTAGC 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 3 cut(s) 48, 56, 157
Bse21I CCTNAGG 1 cut(s) 460
BseBI CCWGG 1 cut(s) 117
BseGI GGATG 4 cut(s) 11, 52, 203, 359
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 2 cut(s) 474, 580
BseNI ACTGG 3 cut(s) 48, 56, 157
BseXI GCAGC 1 cut(s) 442
BseYI CCCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 133
BshFI GGCC 1 cut(s) 468
BshNI GGYRCC 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 1 cut(s) 468
Bso31I GGTCTC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 101
Bsp143I GATC 2 cut(s) 54, 245
BspACI CCGC 1 cut(s) 486
BspANI GGCC 1 cut(s) 468
BspCNI CTCAG 2 cut(s) 473, 579
BspLI GGNNCC 3 cut(s) 114, 210, 467
BspOI GCTAGC 1 cut(s) 179
BspPI GGATC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 252
BsrBI CCGCTC 1 cut(s) 486
BsrI ACTGG 3 cut(s) 48, 56, 157
BssMI GATC 2 cut(s) 54, 245
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 177, 388
BstDEI CTNAG 4 cut(s) 234, 270, 460, 566
BstF5I GGATG 4 cut(s) 11, 52, 203, 359
BstKTI GATC 2 cut(s) 57, 248
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 2 cut(s) 54, 245
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
Bsu36I CCTNAGG 1 cut(s) 460
BsuI GTATCC 1 cut(s) 361
BsuRI GGCC 1 cut(s) 468
BtsCI GGATG 4 cut(s) 11, 52, 203, 359
BtsIMutI CAGTG 2 cut(s) 41, 150
Cac8I GCNNGC 2 cut(s) 177, 388
Cfr13I GGNCC 3 cut(s) 208, 446, 466
Csp6I GTAC 2 cut(s) 202, 590
CviAII CATG 4 cut(s) 16, 205, 241, 394
CviQI GTAC 2 cut(s) 202, 590
DdeI CTNAG 4 cut(s) 234, 270, 460, 566
DpnI GATC 2 cut(s) 56, 247
DpnII GATC 2 cut(s) 54, 245
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 208, 446
Eco81I CCTNAGG 1 cut(s) 460
Eco88I CYCGRG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 466
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 4 cut(s) 19, 208, 244, 397
FatI CATG 4 cut(s) 15, 204, 240, 393
Fnu4HI GCNGC 2 cut(s) 456, 487
FokI GGATG 3 cut(s) 59, 210, 346
Fsp4HI GCNGC 2 cut(s) 456, 487
FspBI CTAG 4 cut(s) 176, 342, 368, 587
GluI GCNGC 2 cut(s) 456, 487
GsaI CCCAGC 1 cut(s) 367
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 1 cut(s) 468
Hin1II CATG 4 cut(s) 19, 208, 244, 397
HinfI GANTC 3 cut(s) 99, 401, 435
HphI GGTGA 2 cut(s) 236, 411
Hpy188I TCNGA 5 cut(s) 257, 323, 355, 483, 583
Hpy188III TCNNGA 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 150, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 4 cut(s) 234, 270, 460, 566
Hsp92II CATG 4 cut(s) 19, 208, 244, 397
Kzo9I GATC 2 cut(s) 54, 245
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 9 cut(s) 29, 37, 46, 75, 102, 129, 138, 377, 447
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 1 cut(s) 498
MaeI CTAG 4 cut(s) 176, 342, 368, 587
MaeIII GTNAC 2 cut(s) 224, 417
MalI GATC 2 cut(s) 56, 247
MbiI CCGCTC 1 cut(s) 486
MboI GATC 2 cut(s) 54, 245
MfeI CAATTG 1 cut(s) 72
MflI RGATCY 1 cut(s) 245
MluCI AATT 3 cut(s) 72, 160, 293
MlyI GAGTC 2 cut(s) 93, 395
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 5 cut(s) 89, 149, 469, 479, 573
MslI CAYNNNNRTG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 2 cut(s) 54, 245
NheI GCTAGC 1 cut(s) 175
NlaIII CATG 4 cut(s) 19, 208, 244, 397
NlaIV GGNNCC 3 cut(s) 114, 210, 467
NmuCI GTSAC 2 cut(s) 224, 417
OliI CACNNNNGTG 1 cut(s) 33
PfeI GAWTC 1 cut(s) 435
PflFI GACNNNGTC 2 cut(s) 7, 415
PkrI GCNGC 2 cut(s) 457, 488
PleI GAGTC 2 cut(s) 93, 395
PpsI GAGTC 2 cut(s) 93, 395
Psp6I CCWGG 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 3 cut(s) 114, 210, 467
PspPI GGNCC 3 cut(s) 208, 446, 466
PsuI RGATCY 1 cut(s) 245
PsyI GACNNNGTC 2 cut(s) 7, 415
RsaI GTAC 2 cut(s) 203, 591
RsaNI GTAC 2 cut(s) 202, 590
RseI CAYNNNNRTG 1 cut(s) 33
SatI GCNGC 2 cut(s) 456, 487
Sau3AI GATC 2 cut(s) 54, 245
Sau96I GGNCC 3 cut(s) 208, 446, 466
ScaI AGTACT 1 cut(s) 591
SchI GAGTC 2 cut(s) 93, 395
ScrFI CCNGG 1 cut(s) 117
SetI ASST 6 cut(s) 177, 181, 347, 369, 392, 588
SfaNI GCATC 1 cut(s) 498
SinI GGWCC 2 cut(s) 208, 446
SmiMI CAYNNNNRTG 1 cut(s) 33
Sse9I AATT 3 cut(s) 72, 160, 293
SsiI CCGC 1 cut(s) 486
SspMI CTAG 4 cut(s) 176, 342, 368, 587
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 9
TaqII GACCGA 1 cut(s) 276
TasI AATT 3 cut(s) 72, 160, 293
TatI WGTACW 1 cut(s) 589
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 1 cut(s) 435
TscAI CASTG 2 cut(s) 48, 157
TseFI GTSAC 2 cut(s) 224, 417
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 2 cut(s) 224, 417
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 2 cut(s) 48, 157
Tth111I GACNNNGTC 2 cut(s) 7, 415
VpaK11BI GGWCC 2 cut(s) 208, 446
XapI RAATTY 1 cut(s) 160
XspI CTAG 4 cut(s) 176, 342, 368, 587
ZrmI AGTACT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.