Prupe.6G019900_v2.0.a1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
1581553 .. 1584711
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G019900.1

Sequence Viewer

Length: 807 bp
ATGCTTATGCAATTGGGATCCACGCACCTGGATGATGCTCTGATTGGCAAACCCCAAGCTGCCTTGGTGGAGATTTGGGCATCTCAAAATGGTGTGATAGGAATAACAGTGGTGTCACACTGGATTGAGCCCGCTTCAGAGTCAAAGGAAGATATCGATGCTGCATCTAGATATTTGGATTTTATGTTTGGATGGTTTATGGACCCATTGACAAGCGGTGACTATCCGCAGAACATGGGGCAACTTGTTGGGGAACGATTACCGGTATTCACGGAAGAACAATCCAAGTTGCTAAGTGGATCATTTGATTTTATTGGATTAAATTACTATTCAGCTAGATATGCAAGTGATGTCTCTAAGGATTATATTGCACCTCCAAGCTACATAGCAGATCATCGCGTTAATATTACAATTGAGCTTAATGGGGTGCCCATTGGTCCACAGGCTGTTTCAGACTGGTTATATGTTTACCCAAAAGGAATCTACAAGCTTTTACTCCACACAAAGGAAAAGTATAATAATCCACTTATTTACATTACAGAGAATGGCATGGATGAGTTCAGTAATCCCATATTACCACTTGAGGAAGCTCTCAATGATATTAATAGAATTCATTACTACTATCACCACCTGTGTTACCTTAAAGATGCAATTAAAGATGGTGTTAGAGTGAAAGGCTACTTTGCATGGTCAGTGCTAGACAACTTTGAATGGAATTCTGGATACATTGTTCAGTTTGGTATTAACTTTGTGGATTATGACAATGGATTGAAAAGGCACTCAAAACTCTCGGCTCACACTGGTTGA

Protein Analysis

269

Amino Acids

30.47

Weight (kDa)

5.01

Isoelectric Point (pI)

30.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 427
AccII CGCG 1 cut(s) 399
AciI CCGC 3 cut(s) 132, 216, 227
AclWI GGATC 3 cut(s) 12, 25, 307
AcsI RAATTY 2 cut(s) 609, 715
AcuI CTGAAG 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 505
AgeI ACCGGT 1 cut(s) 262
AgsI TTSAA 2 cut(s) 710, 772
AjnI CCWGG 1 cut(s) 27
AloI GAACNNNNNNTCC 2 cut(s) 714, 746
AluBI AGCT 6 cut(s) 59, 335, 381, 418, 490, 590
AluI AGCT 6 cut(s) 59, 335, 381, 418, 490, 590
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 3 cut(s) 12, 25, 307
ApeKI GCWGC 2 cut(s) 59, 161
ApoI RAATTY 2 cut(s) 609, 715
AseI ATTAAT 1 cut(s) 603
AsiGI ACCGGT 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 202, 437
AsuHPI GGTGA 2 cut(s) 230, 617
AvaII GGWCC 2 cut(s) 202, 437
BaeGI GKGCMC 1 cut(s) 432
BamHI GGATCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 427
BanII GRGCYC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 46, 148
BccI CCATC 2 cut(s) 186, 653
BciT130I CCWGG 1 cut(s) 29
BciVI GTATCC 1 cut(s) 716
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 3 cut(s) 168, 336, 698
BfuI GTATCC 1 cut(s) 716
BisI GCNGC 2 cut(s) 60, 162
BlsI GCNGC 2 cut(s) 61, 163
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 2 cut(s) 202, 437
BmgT120I GGNCC 2 cut(s) 202, 437
BmiI GGNNCC 3 cut(s) 19, 204, 429
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 5 cut(s) 25, 89, 148, 173, 637
BpuEI CTTGAG 1 cut(s) 602
Bsa29I ATCGAT 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 3 cut(s) 125, 461, 805
BseBI CCWGG 1 cut(s) 29
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 3 cut(s) 37, 197, 559
BseLI CCNNNNNNNGG 1 cut(s) 505
BseNI ACTGG 3 cut(s) 125, 461, 805
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 2 cut(s) 46, 148
Bsh1236I CGCG 1 cut(s) 399
BshNI GGYRCC 1 cut(s) 427
BshTI ACCGGT 1 cut(s) 262
BshVI ATCGAT 1 cut(s) 156
BsiSI CCGG 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 505
BsmAI GTCTC 1 cut(s) 358
Bsp1286I GDGCHC 2 cut(s) 132, 432
Bsp143I GATC 3 cut(s) 17, 299, 391
BspACI CCGC 3 cut(s) 132, 216, 227
BspDI ATCGAT 1 cut(s) 156
BspFNI CGCG 1 cut(s) 399
BspLI GGNNCC 3 cut(s) 19, 204, 429
BspPI GGATC 3 cut(s) 12, 25, 307
BspT107I GGYRCC 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 3 cut(s) 125, 461, 805
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 3 cut(s) 17, 299, 391
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 2 cut(s) 293, 357
BstF5I GGATG 3 cut(s) 37, 197, 559
BstFNI CGCG 1 cut(s) 399
BstKTI GATC 3 cut(s) 20, 302, 394
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 3 cut(s) 17, 299, 391
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 432
BstUI CGCG 1 cut(s) 399
BstV1I GCAGC 2 cut(s) 46, 148
BstX2I RGATCY 1 cut(s) 17
BstXI CCANNNNNNTGG 1 cut(s) 28
BstYI RGATCY 1 cut(s) 17
Bsu15I ATCGAT 1 cut(s) 156
BsuI GTATCC 1 cut(s) 716
BsuTUI ATCGAT 1 cut(s) 156
BtgZI GCGATG 1 cut(s) 380
BtsCI GGATG 3 cut(s) 37, 197, 559
BtsIMutI CAGTG 4 cut(s) 114, 118, 699, 798
Cac8I GCNNGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 2 cut(s) 202, 437
ClaI ATCGAT 1 cut(s) 156
CspAI ACCGGT 1 cut(s) 262
CviAII CATG 3 cut(s) 235, 550, 687
DdeI CTNAG 2 cut(s) 293, 357
DpnI GATC 3 cut(s) 19, 301, 393
DpnII GATC 3 cut(s) 17, 299, 391
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 132
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 202, 437
Eco57I CTGAAG 1 cut(s) 120
EcoRI GAATTC 2 cut(s) 609, 715
EcoRII CCWGG 1 cut(s) 27
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 3 cut(s) 238, 553, 690
FatI CATG 3 cut(s) 234, 549, 686
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 60, 162
FokI GGATG 3 cut(s) 44, 204, 566
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 60, 162
FspBI CTAG 3 cut(s) 168, 336, 698
GluI GCNGC 2 cut(s) 60, 162
HapII CCGG 1 cut(s) 263
Hin1II CATG 3 cut(s) 238, 553, 690
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 2 cut(s) 140, 480
HpaII CCGG 1 cut(s) 263
HphI GGTGA 2 cut(s) 230, 617
Hpy166II GTNNAC 2 cut(s) 440, 469
Hpy188I TCNGA 3 cut(s) 42, 139, 454
Hpy188III TCNNGA 2 cut(s) 168, 720
Hpy8I GTNNAC 2 cut(s) 440, 469
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 6 cut(s) 10, 164, 344, 371, 650, 686
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 2 cut(s) 293, 357
Hsp92II CATG 3 cut(s) 238, 553, 690
Kzo9I GATC 3 cut(s) 17, 299, 391
LpnPI CCDG 9 cut(s) 14, 41, 106, 276, 428, 442, 644, 705, 786
Lsp1109I GCAGC 2 cut(s) 46, 148
LweI GCATC 5 cut(s) 25, 89, 148, 173, 637
MaeI CTAG 3 cut(s) 168, 336, 698
MaeIII GTNAC 3 cut(s) 114, 218, 635
MalI GATC 3 cut(s) 19, 301, 393
MboI GATC 3 cut(s) 17, 299, 391
MboII GAAGA 2 cut(s) 161, 287
MfeI CAATTG 2 cut(s) 11, 411
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 2 cut(s) 132, 432
MluCI AATT 6 cut(s) 11, 322, 411, 609, 651, 715
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 2 cut(s) 384, 577
MseI TTAA 7 cut(s) 320, 402, 420, 603, 642, 654, 744
MslI CAYNNNNRTG 1 cut(s) 30
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 29
MunI CAATTG 2 cut(s) 11, 411
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 1 cut(s) 341
NdeII GATC 3 cut(s) 17, 299, 391
NlaIII CATG 3 cut(s) 238, 553, 690
NlaIV GGNNCC 3 cut(s) 19, 204, 429
NmeAIII GCCGAG 1 cut(s) 770
NmuCI GTSAC 2 cut(s) 114, 218
PfeI GAWTC 1 cut(s) 480
PinAI ACCGGT 1 cut(s) 262
PkrI GCNGC 2 cut(s) 61, 163
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PshBI ATTAAT 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 3 cut(s) 19, 204, 429
PspPI GGNCC 2 cut(s) 202, 437
PsuI RGATCY 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 7 cut(s) 320, 402, 420, 603, 642, 654, 744
SatI GCNGC 2 cut(s) 60, 162
Sau3AI GATC 3 cut(s) 17, 299, 391
Sau96I GGNCC 2 cut(s) 202, 437
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 2 cut(s) 132, 432
SfaNI GCATC 5 cut(s) 25, 89, 148, 173, 637
SinI GGWCC 2 cut(s) 202, 437
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 6 cut(s) 11, 322, 411, 609, 651, 715
SsiI CCGC 3 cut(s) 132, 216, 227
SspI AATATT 1 cut(s) 406
SspMI CTAG 3 cut(s) 168, 336, 698
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 156
TasI AATT 6 cut(s) 11, 322, 411, 609, 651, 715
TfiI GAWTC 1 cut(s) 480
Tru1I TTAA 7 cut(s) 320, 402, 420, 603, 642, 654, 744
Tru9I TTAA 7 cut(s) 320, 402, 420, 603, 642, 654, 744
TscAI CASTG 4 cut(s) 114, 125, 699, 805
TseFI GTSAC 2 cut(s) 114, 218
TseI GCWGC 2 cut(s) 59, 161
Tsp45I GTSAC 2 cut(s) 114, 218
TspDTI ATGAA 1 cut(s) 602
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 4 cut(s) 114, 125, 699, 805
VpaK11BI GGWCC 2 cut(s) 202, 437
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 2 cut(s) 609, 715
XbaI TCTAGA 1 cut(s) 167
XspI CTAG 3 cut(s) 168, 336, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.