Rmu_sc0002139.1_g000005

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002139.1
Physical Location & Seq
Reverse (-)
30702 .. 32115
1414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002139.1_g000005.1.cds

Sequence Viewer

Length: 765 bp
atggttgaatatgcacaggcaaaacagaatggcttgatagggataacactagtgtcacactggtttgtgccatattctgattcaaagcaagacaaagctgcagcattacgagcattggattttatgtttggatggtatatggatcccatgacaaatggtgactatccaagaagcatgcgatctcttgtgggaaatcgattacccaagttcactgcagagcaatcagagatgctgaaaggttcattcgattttcttggcttaaactactacacaggtaattatgcagccaatacaccatttcgcaatgctaaagatccaagctactcgacagactctctcgctaatcttacagccgtgcgtaatgggattccaattggtcgaccggctgcttcagattggcttcatttttatccacaagggtttatcgagatattgcgttacacgaagaaaaagtataacaatccgcttatttatatcactgaaaatggatgggatgaccgcgatgatcccaatttatcgctagaggaagccctcaccgataatcaaagaatcgagtattacaatcgccatcttgatgaacttcataaagcaattaaggctggcgttaaggtgaaggggtactttgcatggtcattgtttgataactttgagtgggctgatggttatagttgtaggtttggcatcaattttgtggattacaaaaatggactcaaaagacaccctaaactctccgcagcttggttcaaggactttctgcgaaagtag

Protein Analysis

254

Amino Acids

29.41

Weight (kDa)

8.7

Isoelectric Point (pI)

32.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 379
AccII CGCG 1 cut(s) 501
AciI CCGC 3 cut(s) 464, 499, 732
AclWI GGATC 4 cut(s) 137, 150, 308, 500
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 1 cut(s) 738
AgsI TTSAA 3 cut(s) 8, 84, 745
AhlI ACTAGT 1 cut(s) 49
AluBI AGCT 3 cut(s) 98, 321, 737
AluI AGCT 3 cut(s) 98, 321, 737
AlwI GGATC 4 cut(s) 137, 150, 308, 500
ApeKI GCWGC 5 cut(s) 98, 101, 284, 386, 734
AsuHPI GGTGA 3 cut(s) 170, 526, 622
BamHI GGATCC 1 cut(s) 142
BbvI GCAGC 5 cut(s) 85, 113, 296, 373, 746
BccI CCATC 4 cut(s) 126, 483, 576, 653
BceAI ACGGC 1 cut(s) 338
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 521
BfmI CTRYAG 2 cut(s) 99, 213
BisI GCNGC 5 cut(s) 99, 102, 285, 387, 735
BlsI GCNGC 5 cut(s) 100, 103, 286, 388, 736
BmiI GGNNCC 1 cut(s) 144
BmsI GCATC 2 cut(s) 219, 690
Bsa29I ATCGAT 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 738
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 310
BseCI ATCGAT 1 cut(s) 196
BseGI GGATG 3 cut(s) 137, 494, 499
BseLI CCNNNNNNNGG 1 cut(s) 738
BseMI GCAATG 1 cut(s) 310
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 5 cut(s) 85, 113, 296, 373, 746
Bsh1236I CGCG 1 cut(s) 501
Bsh1285I CGRYCG 1 cut(s) 383
BshVI ATCGAT 1 cut(s) 196
BsiEI CGRYCG 1 cut(s) 383
BsiSI CCGG 1 cut(s) 383
BslI CCNNNNNNNGG 1 cut(s) 738
Bsp143I GATC 4 cut(s) 142, 179, 313, 505
BspACI CCGC 3 cut(s) 464, 499, 732
BspDI ATCGAT 1 cut(s) 196
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 1 cut(s) 144
BspMAI CTGCAG 2 cut(s) 103, 217
BspPI GGATC 4 cut(s) 137, 150, 308, 500
BsrDI GCAATG 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 382
BssMI GATC 4 cut(s) 142, 179, 313, 505
BstC8I GCNNGC 2 cut(s) 176, 601
BstF5I GGATG 3 cut(s) 137, 494, 499
BstFNI CGCG 1 cut(s) 501
BstKTI GATC 4 cut(s) 145, 182, 316, 508
BstMBI GATC 4 cut(s) 142, 179, 313, 505
BstMCI CGRYCG 1 cut(s) 383
BstMWI GCNNNNNNNGC 2 cut(s) 110, 596
BstNSI RCATGY 1 cut(s) 178
BstSFI CTRYAG 2 cut(s) 99, 213
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 5 cut(s) 85, 113, 296, 373, 746
BstX2I RGATCY 2 cut(s) 142, 313
BstYI RGATCY 2 cut(s) 142, 313
Bsu15I ATCGAT 1 cut(s) 196
BsuTUI ATCGAT 1 cut(s) 196
BtgZI GCGATG 1 cut(s) 516
BtsCI GGATG 3 cut(s) 137, 494, 499
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 3 cut(s) 58, 210, 477
Cac8I GCNNGC 2 cut(s) 176, 601
Cfr10I RCCGGY 1 cut(s) 382
ClaI ATCGAT 1 cut(s) 196
Csp6I GTAC 1 cut(s) 619
CviAII CATG 3 cut(s) 148, 175, 627
CviQI GTAC 1 cut(s) 619
DpnI GATC 4 cut(s) 144, 181, 315, 507
DpnII GATC 4 cut(s) 142, 179, 313, 505
Eco57I CTGAAG 1 cut(s) 375
FaeI CATG 3 cut(s) 151, 178, 630
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FatI CATG 3 cut(s) 147, 174, 626
FblI GTMKAC 1 cut(s) 379
Fnu4HI GCNGC 5 cut(s) 99, 102, 285, 387, 735
FokI GGATG 3 cut(s) 144, 501, 506
Fsp4HI GCNGC 5 cut(s) 99, 102, 285, 387, 735
FspBI CTAG 2 cut(s) 50, 521
GluI GCNGC 5 cut(s) 99, 102, 285, 387, 735
HapII CCGG 1 cut(s) 383
Hin1II CATG 3 cut(s) 151, 178, 630
HincII GTYRAC 1 cut(s) 380
HindII GTYRAC 1 cut(s) 380
HinfI GANTC 5 cut(s) 80, 332, 367, 549, 708
HpaII CCGG 1 cut(s) 383
HphI GGTGA 3 cut(s) 170, 526, 622
Hpy166II GTNNAC 2 cut(s) 210, 380
Hpy188I TCNGA 3 cut(s) 79, 226, 394
Hpy188III TCNNGA 2 cut(s) 427, 572
Hpy8I GTNNAC 2 cut(s) 210, 380
HpyAV CCTTC 1 cut(s) 607
HpyCH4V TGCA 5 cut(s) 14, 101, 215, 284, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 596
Hsp92II CATG 3 cut(s) 151, 178, 630
Kzo9I GATC 4 cut(s) 142, 179, 313, 505
LpnPI CCDG 5 cut(s) 2, 46, 258, 396, 585
Lsp1109I GCAGC 5 cut(s) 85, 113, 296, 373, 746
LweI GCATC 2 cut(s) 219, 690
MaeI CTAG 2 cut(s) 50, 521
MaeIII GTNAC 3 cut(s) 54, 158, 437
MalI GATC 4 cut(s) 144, 181, 315, 507
MboI GATC 4 cut(s) 142, 179, 313, 505
MboII GAAGA 1 cut(s) 457
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 2 cut(s) 142, 313
MluCI AATT 5 cut(s) 277, 372, 511, 591, 685
MlyI GAGTC 2 cut(s) 326, 702
MnlI CCTC 2 cut(s) 517, 542
MseI TTAA 3 cut(s) 260, 594, 606
MslI CAYNNNNRTG 1 cut(s) 573
MspI CCGG 1 cut(s) 383
MunI CAATTG 1 cut(s) 372
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 2 cut(s) 110, 596
NdeII GATC 4 cut(s) 142, 179, 313, 505
NlaIII CATG 3 cut(s) 151, 178, 630
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 2 cut(s) 54, 158
NspI RCATGY 1 cut(s) 178
PaeI GCATGC 1 cut(s) 178
PfeI GAWTC 3 cut(s) 80, 367, 549
PkrI GCNGC 5 cut(s) 100, 103, 286, 388, 736
PleI GAGTC 2 cut(s) 326, 702
PpsI GAGTC 2 cut(s) 326, 702
PspN4I GGNNCC 1 cut(s) 144
PstI CTGCAG 2 cut(s) 103, 217
PsuI RGATCY 2 cut(s) 142, 313
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 1 cut(s) 573
SalI GTCGAC 1 cut(s) 378
SaqAI TTAA 3 cut(s) 260, 594, 606
SatI GCNGC 5 cut(s) 99, 102, 285, 387, 735
Sau3AI GATC 4 cut(s) 142, 179, 313, 505
SchI GAGTC 2 cut(s) 326, 702
SetI ASST 7 cut(s) 100, 241, 277, 323, 612, 677, 739
SfaNI GCATC 2 cut(s) 219, 690
SfcI CTRYAG 2 cut(s) 99, 213
SmiMI CAYNNNNRTG 1 cut(s) 573
SpeI ACTAGT 1 cut(s) 49
SphI GCATGC 1 cut(s) 178
Sse9I AATT 5 cut(s) 277, 372, 511, 591, 685
SsiI CCGC 3 cut(s) 464, 499, 732
SspMI CTAG 2 cut(s) 50, 521
TaqI TCGA 6 cut(s) 196, 246, 326, 379, 426, 552
TasI AATT 5 cut(s) 277, 372, 511, 591, 685
TfiI GAWTC 3 cut(s) 80, 367, 549
Tru1I TTAA 3 cut(s) 260, 594, 606
Tru9I TTAA 3 cut(s) 260, 594, 606
TscAI CASTG 3 cut(s) 65, 217, 484
TseFI GTSAC 2 cut(s) 54, 158
TseI GCWGC 5 cut(s) 98, 101, 284, 386, 734
Tsp45I GTSAC 2 cut(s) 54, 158
TspDTI ATGAA 4 cut(s) 231, 392, 572, 591
TspRI CASTG 3 cut(s) 65, 217, 484
XceI RCATGY 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 379
XspI CTAG 2 cut(s) 50, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.