Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000117

Physical Location & Seq

Genomic Coordinates Reverse (-)

23433473 .. 23435101

Gene Structure 1629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1114900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAGCAGCTGTTTTTGGACCCATTAACAAGTGGTGACTATCCACACACCATGCGATCAATTGTTGGGAAACGATTGCCCAAATTCACAAAAGAACAATCCAAGTTGCTAAACGGATCATTTGATTTTCTTGGAATAAATTATTATACTGCCAGATACACAAGTAGTGCACCCAAGAACAATTCACTACCGGCAAGCTACGTAACAGATTCTCGTGCTGATCTTACAATACTCATTGGTCCACAGGCTGCTTCGGATTGGTTATATGTATATCCAAAAGGAATTCACGATCTTGTGCTTTACACAAAGGAAAAATATAATGATCCACTCATTTATATTACTGAGAATGGTGTATCAGAGTTGAATAATCCAGAACTATCACTTGAAGAGGCCCTTCATGATACCAGTAGAATTGATTACTACTATCGTCACCTGTGTTACCTTCAAGTGGCAATGAAAAATGGCGCGAAAGTGAAGGGATACTTTGCATGGACATTGTTAGACAACTTTGAATGGACTTCTGGATACACTGTCCGATTTGGTTTAAACTACGTGGATTATAAAGATGGGCTGAAAAGATACCCAAAACTCTCAGCACACTGGTTTAAAAATTTGCTTAAGAAGAATAAATTCAAAGAAAGCTACATTTCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

219

Amino Acids

25.31

Weight (kDa)

8.85

Isoelectric Point (pI)

21.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	2 - 210	3.3e-56	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca	FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica	MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica	Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis	pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis	RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata	RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora	Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa	Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha	Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana	Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	561, 655
AccII	CGCG	1 cut(s)	467
AclWI	GGATC	2 cut(s)	124, 317
AcsI	RAATTY	4 cut(s)	83, 282, 610, 629
AfiI	CCNNNNNNNGG	1 cut(s)	448
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	5 cut(s)	364, 386, 446, 512, 634
AluBI	AGCT	3 cut(s)	10, 198, 642
AluI	AGCT	3 cut(s)	10, 198, 642
Alw21I	GWGCWC	1 cut(s)	172
Alw44I	GTGCAC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	124, 317
AoxI	GGCC	1 cut(s)	390
ApaLI	GTGCAC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	7, 248
ApoI	RAATTY	4 cut(s)	83, 282, 610, 629
Asp700I	GAANNNNTTC	1 cut(s)	629
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	3 cut(s)	19, 239, 391
AsuHPI	GGTGA	2 cut(s)	47, 422
AvaII	GGWCC	2 cut(s)	19, 239
BaeGI	GKGCMC	1 cut(s)	172
BaeI	ACNNNNGTAYC	2 cut(s)	148, 181
BauI	CACGAG	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	19, 235
BccI	CCATC	1 cut(s)	560
BciVI	GTATCC	2 cut(s)	473, 518
BfrI	CTTAAG	1 cut(s)	617
BfuI	GTATCC	2 cut(s)	473, 518
BisI	GCNGC	2 cut(s)	8, 249
BlsI	GCNGC	2 cut(s)	9, 250
Bme18I	GGWCC	2 cut(s)	19, 239
BmgT120I	GGNCC	3 cut(s)	19, 239, 391
BmiI	GGNNCC	1 cut(s)	21
BsaAI	YACGTR	2 cut(s)	202, 553
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	405, 605
Bse3DI	GCAATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	333, 606
BseNI	ACTGG	2 cut(s)	405, 605
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	2 cut(s)	19, 235
Bsh1236I	CGCG	1 cut(s)	467
BshFI	GGCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	448
BsnI	GGCC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	5 cut(s)	56, 116, 220, 289, 322
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	2 cut(s)	334, 605
BspFNI	CGCG	1 cut(s)	467
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	2 cut(s)	124, 317
BspTI	CTTAAG	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	405, 605
BssAI	RCCGGY	1 cut(s)	190
BssMI	GATC	5 cut(s)	56, 116, 220, 289, 322
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	381
BstAFI	CTTAAG	1 cut(s)	617
BstBAI	YACGTR	2 cut(s)	202, 553
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	342, 592
BstFNI	CGCG	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	5 cut(s)	59, 119, 223, 292, 325
BstMBI	GATC	5 cut(s)	56, 116, 220, 289, 322
BstSLI	GKGCMC	1 cut(s)	172
BstSNI	TACGTA	1 cut(s)	202
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	19, 235
BsuI	GTATCC	2 cut(s)	473, 518
BsuRI	GGCC	1 cut(s)	392
BtsIMutI	CAGTG	2 cut(s)	528, 598
Cac8I	GCNNGC	1 cut(s)	196
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	1 cut(s)	467
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	3 cut(s)	19, 239, 391
CviAII	CATG	3 cut(s)	52, 398, 489
CviJI	RGCY	6 cut(s)	10, 198, 248, 392, 571, 642
CviKI_1	RGCY	6 cut(s)	10, 198, 248, 392, 571, 642
DdeI	CTNAG	2 cut(s)	342, 592
DpnI	GATC	5 cut(s)	58, 118, 222, 291, 324
DpnII	GATC	5 cut(s)	56, 116, 220, 289, 322
DraI	TTTAAA	2 cut(s)	546, 607
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco105I	TACGTA	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	19, 239
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	282
FaeI	CATG	3 cut(s)	55, 401, 492
FalI	AAGNNNNNCTT	4 cut(s)	378, 410, 467, 499
FatI	CATG	3 cut(s)	51, 397, 488
Fnu4HI	GCNGC	2 cut(s)	8, 249
Fsp4HI	GCNGC	2 cut(s)	8, 249
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	2 cut(s)	8, 249
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	1 cut(s)	191
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	3 cut(s)	55, 401, 492
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	2 cut(s)	47, 422
Hpy166II	GTNNAC	2 cut(s)	170, 242
Hpy188I	TCNGA	3 cut(s)	256, 358, 536
Hpy188III	TCNNGA	4 cut(s)	287, 371, 398, 522
Hpy8I	GTNNAC	2 cut(s)	170, 242
HpyAV	CCTTC	3 cut(s)	404, 452, 469
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	2 cut(s)	201, 552
HpyCH4V	TGCA	2 cut(s)	170, 488
HpyF3I	CTNAG	2 cut(s)	342, 592
HpySE526I	ACGT	2 cut(s)	201, 552
Hsp92II	CATG	3 cut(s)	55, 401, 492
HspAI	GCGC	1 cut(s)	465
Kzo9I	GATC	5 cut(s)	56, 116, 220, 289, 322
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	166, 204, 230, 384, 418, 446, 507, 586
Lsp1109I	GCAGC	2 cut(s)	19, 235
MaeII	ACGT	2 cut(s)	201, 552
MaeIII	GTNAC	4 cut(s)	35, 202, 428, 437
MalI	GATC	5 cut(s)	58, 118, 222, 291, 324
MboI	GATC	5 cut(s)	56, 116, 220, 289, 322
MboII	GAAGA	2 cut(s)	398, 634
MfeI	CAATTG	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	8 cut(s)	60, 83, 139, 181, 282, 411, 610, 629
MnlI	CCTC	1 cut(s)	382
MroXI	GAANNNNTTC	1 cut(s)	629
MseI	TTAA	4 cut(s)	26, 545, 606, 618
MspA1I	CMGCKG	1 cut(s)	10
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	1 cut(s)	191
MssI	GTTTAAAC	1 cut(s)	546
MunI	CAATTG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	467
NdeII	GATC	5 cut(s)	56, 116, 220, 289, 322
NlaIII	CATG	3 cut(s)	55, 401, 492
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	35, 428
PagI	TCATGA	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	9, 250
PmeI	GTTTAAAC	1 cut(s)	546
Ppu21I	YACGTR	2 cut(s)	202, 553
PsiI	TTATAA	2 cut(s)	561, 655
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	3 cut(s)	19, 239, 391
PvuII	CAGCTG	1 cut(s)	10
SaqAI	TTAA	4 cut(s)	26, 545, 606, 618
SatI	GCNGC	2 cut(s)	8, 249
Sau3AI	GATC	5 cut(s)	56, 116, 220, 289, 322
Sau96I	GGNCC	3 cut(s)	19, 239, 391
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	7 cut(s)	12, 200, 204, 435, 444, 555, 644
SinI	GGWCC	2 cut(s)	19, 239
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SnaBI	TACGTA	1 cut(s)	202
Sse9I	AATT	8 cut(s)	60, 83, 139, 181, 282, 411, 610, 629
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	2 cut(s)	204, 555
TasI	AATT	8 cut(s)	60, 83, 139, 181, 282, 411, 610, 629
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	4 cut(s)	26, 545, 606, 618
Tru9I	TTAA	4 cut(s)	26, 545, 606, 618
TscAI	CASTG	2 cut(s)	535, 605
TseFI	GTSAC	2 cut(s)	35, 428
TseI	GCWGC	2 cut(s)	7, 248
Tsp45I	GTSAC	2 cut(s)	35, 428
TspDTI	ATGAA	3 cut(s)	386, 470, 639
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	535, 605
Vha464I	CTTAAG	1 cut(s)	617
VneI	GTGCAC	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	19, 239
XapI	RAATTY	4 cut(s)	83, 282, 610, 629
XmnI	GAANNNNTTC	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.