Rorug05G0458100

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
63095623 .. 63097922
2300 bp
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UTR
Exon/CDS
Intron
Rorug05G0458100.1

Sequence Viewer

Length: 312 bp
ATGTTCCTCCACCACCGCCAACAACACGGTCAAGGAAAGAGTCTGGAGCATTTCCAAAATTTAGCTCAAGTTCAAGATCTTAAGGTTAGACGACAATTCGATCCTCAAATTGTTGATAGAAGACAGAGCCCAAAAATTAGTCAGTGTCATCACCAGGTTCTTGGAGTAAAATCAGGCTACATCAAGGGTTGTGGTTTTGGCCCTAGGCCTCCACCATCTAGCACTTCTCAATCGTTAATAGATGAAATGTCTGAGAAGAATAAAGAGTTAGAAGATAAACTTGAAGAGACCCAAGATACTATAAAGGCTTAA

Protein Analysis

103

Amino Acids

11.82

Weight (kDa)

8.64

Isoelectric Point (pI)

57.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 16
AclWI GGATC 1 cut(s) 95
AcsI RAATTY 1 cut(s) 58
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 2 cut(s) 74, 284
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 95
AoxI GGCC 2 cut(s) 199, 206
ApoI RAATTY 1 cut(s) 58
AspA2I CCTAGG 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 143
AvrII CCTAGG 1 cut(s) 203
BanII GRGCYC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 127
BccI CCATC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 2 cut(s) 204, 219
BfrI CTTAAG 1 cut(s) 80
BglII AGATCT 1 cut(s) 76
BlnI CCTAGG 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 243
BshFI GGCC 2 cut(s) 201, 208
BsmAI GTCTC 1 cut(s) 281
BsnI GGCC 2 cut(s) 201, 208
Bso31I GGTCTC 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 76, 100
BspACI CCGC 1 cut(s) 16
BspANI GGCC 2 cut(s) 201, 208
BspCNI CTCAG 1 cut(s) 244
BspPI GGATC 1 cut(s) 95
BspTI CTTAAG 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 2 cut(s) 76, 100
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 279
BstAFI CTTAAG 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 252
BstKTI GATC 2 cut(s) 79, 103
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 2 cut(s) 76, 100
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 2 cut(s) 201, 208
BtsIMutI CAGTG 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 200
CsiI ACCWGGT 1 cut(s) 153
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviJI RGCY 6 cut(s) 65, 129, 177, 201, 208, 308
CviKI_1 RGCY 6 cut(s) 65, 129, 177, 201, 208, 308
DdeI CTNAG 1 cut(s) 252
DpnI GATC 2 cut(s) 78, 102
DpnII GATC 2 cut(s) 76, 100
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 203
Eco147I AGGCCT 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 203
FaiI YATR 1 cut(s) 302
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FriOI GRGCYC 1 cut(s) 131
FspBI CTAG 2 cut(s) 204, 219
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 2 cut(s) 201, 208
HinfI GANTC 1 cut(s) 40
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 2 cut(s) 44, 74
HpyCH4III ACNGT 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 252
Kzo9I GATC 2 cut(s) 76, 100
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 4 cut(s) 29, 140, 159, 167
MabI ACCWGGT 1 cut(s) 153
MaeI CTAG 2 cut(s) 204, 219
MalI GATC 2 cut(s) 78, 102
MboI GATC 2 cut(s) 76, 100
MboII GAAGA 4 cut(s) 132, 268, 284, 296
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 4 cut(s) 58, 95, 108, 135
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 3 cut(s) 17, 114, 219
MseI TTAA 3 cut(s) 81, 236, 310
MspCI CTTAAG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
NdeII GATC 2 cut(s) 76, 100
PceI AGGCCT 1 cut(s) 208
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 76
SaqAI TTAA 3 cut(s) 81, 236, 310
Sau3AI GATC 2 cut(s) 76, 100
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 1 cut(s) 131
SetI ASST 3 cut(s) 67, 87, 159
SexAI ACCWGGT 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 66, 80
SmoI CTYRAG 2 cut(s) 66, 80
Sse9I AATT 4 cut(s) 58, 95, 108, 135
SseBI AGGCCT 1 cut(s) 208
SsiI CCGC 1 cut(s) 16
SspMI CTAG 2 cut(s) 204, 219
StuI AGGCCT 1 cut(s) 208
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 99
TasI AATT 4 cut(s) 58, 95, 108, 135
Tru1I TTAA 3 cut(s) 81, 236, 310
Tru9I TTAA 3 cut(s) 81, 236, 310
TscAI CASTG 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 1 cut(s) 149
Vha464I CTTAAG 1 cut(s) 80
XapI RAATTY 1 cut(s) 58
XmaJI CCTAGG 1 cut(s) 203
XspI CTAG 2 cut(s) 204, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.