RchiOBHm_Chr5g0071511

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
77326314 .. 77328665
2352 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34659

Sequence Viewer

Length: 969 bp
ATGCCATTTGTAACCCTCTTCCACTGGGATCTTCCCCAGACTTTAGAAGATGAATATGGCGGTTTCTTAAGCCCTCTCATTGTCAATCATTTTCGGGACTATGCAGAGCTTTGTTACAAGGAATTTGGTGATAGGGTAAAGCACTGGATCACTTTTAATGAGCCATATAGTTATAGTGCTGGTGGTTATGCAGTGGCAATTTTGGCACCAGGACGCTGTTCTGATCGGCAGGAACTAAATTGCACCGGTGGGAATTCGGGTACTGAACCATACTTGGTGGCACACAACCAGCTCCTTGCTCATACAGCTGCAATAACATTATACAAGCAACAATATCAGTCATCTCAAAAGGGATTGATAGGGATTACTCTAGTGTCAAACTGGTTTGAGCCGGTTTCTGAGGCAGAGCACCATAAAAATGCTACACTAAGAGCTCTAGATTATATGTTTATGGACCCCTTGACAAATGGTGATTATCCACATAGCATGAGATCTCTTGTTGGAAACCGATTACCCAAATTCACAAAGGAGCAATCCAAGTTGCTAATTGGATCATTTGATTTTCTGGGATTGAATTACTACACAGCTAATTATGCAGCCGATGCACCTCACTATAATTCTGTCAATGCAAGCTACTTGACAGACACTTATGCTACTCTTTCCTGTAAGTACTGCAAGTTCAAAAATTTCATTTCTTCTACAGCTGCTTCGGATTGGCTATACGTTTATCCCAGAGGAATTCGAGATCTTTTGCTCTACACGAAGACAAAGTATAATGATCCACTCATATACGTTACTGAGAATGGTATTGATGAGTCCAATGATCCCAAATTAACACTCGAAGTATCCCTTAACGACACCCAGAGAGTTGACTACTACTATCGCCACCTCTATTGCCTTCAAAGAGCAATCAAGGATGGTGTGAATGTTAAGGGATACTTTGCATGGTCATTGCTAGACAAACTTTGA

Protein Analysis

322

Amino Acids

36.9

Weight (kDa)

6.05

Isoelectric Point (pI)

32.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 1 - 321 5e-82 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AciI CCGC 1 cut(s) 60
AclWI GGATC 5 cut(s) 36, 155, 559, 773, 818
AcsI RAATTY 5 cut(s) 122, 253, 518, 685, 738
AfaI GTAC 2 cut(s) 262, 671
AflII CTTAAG 1 cut(s) 67
AgeI ACCGGT 1 cut(s) 245
AgsI TTSAA 3 cut(s) 574, 682, 902
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 7 cut(s) 109, 292, 308, 434, 587, 633, 704
AluI AGCT 7 cut(s) 109, 292, 308, 434, 587, 633, 704
Alw21I GWGCWC 2 cut(s) 411, 436
AlwI GGATC 5 cut(s) 36, 155, 559, 773, 818
ApeKI GCWGC 3 cut(s) 308, 596, 704
ApoI RAATTY 5 cut(s) 122, 253, 518, 685, 738
AsiGI ACCGGT 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 454
AsuHPI GGTGA 2 cut(s) 140, 482
AvaII GGWCC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 770
Bbv12I GWGCWC 2 cut(s) 411, 436
BbvI GCAGC 3 cut(s) 295, 608, 691
BccI CCATC 1 cut(s) 911
BciT130I CCWGG 1 cut(s) 210
BciVI GTATCC 2 cut(s) 856, 929
BfaI CTAG 3 cut(s) 371, 437, 956
BfmI CTRYAG 1 cut(s) 699
BfrI CTTAAG 1 cut(s) 67
BfuI GTATCC 2 cut(s) 856, 929
BglII AGATCT 2 cut(s) 491, 745
BisI GCNGC 3 cut(s) 309, 597, 705
BlsI GCNGC 3 cut(s) 310, 598, 706
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 2 cut(s) 207, 456
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 592
BmuI ACTGGG 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 770
BsaWI WCCGGW 1 cut(s) 245
Bse118I RCCGGY 2 cut(s) 245, 391
Bse1I ACTGG 3 cut(s) 29, 149, 386
Bse3DI GCAATG 1 cut(s) 950
BseBI CCWGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 922
BseMI GCAATG 1 cut(s) 950
BseMII CTCAG 2 cut(s) 390, 789
BseNI ACTGG 3 cut(s) 29, 149, 386
BseXI GCAGC 3 cut(s) 295, 608, 691
BshNI GGYRCC 1 cut(s) 205
BshTI ACCGGT 1 cut(s) 245
BsiHKAI GWGCWC 2 cut(s) 411, 436
BsiSI CCGG 2 cut(s) 246, 392
BslFI GGGAC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 411, 436
Bsp143I GATC 8 cut(s) 28, 147, 223, 491, 551, 745, 778, 823
BspACI CCGC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 391, 790
BspLI GGNNCC 2 cut(s) 207, 456
BspPI GGATC 5 cut(s) 36, 155, 559, 773, 818
BspT107I GGYRCC 1 cut(s) 205
BspTI CTTAAG 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 950
BsrFI RCCGGY 2 cut(s) 245, 391
BsrI ACTGG 3 cut(s) 29, 149, 386
BssAI RCCGGY 2 cut(s) 245, 391
BssMI GATC 8 cut(s) 28, 147, 223, 491, 551, 745, 778, 823
Bst2UI CCWGG 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 23
BstAFI CTTAAG 1 cut(s) 67
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 1 cut(s) 631
BstDEI CTNAG 3 cut(s) 399, 428, 798
BstF5I GGATG 1 cut(s) 922
BstKTI GATC 8 cut(s) 31, 150, 226, 494, 554, 748, 781, 826
BstMBI GATC 8 cut(s) 28, 147, 223, 491, 551, 745, 778, 823
BstMWI GCNNNNNNNGC 4 cut(s) 203, 305, 593, 602
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 699
BstV1I GCAGC 3 cut(s) 295, 608, 691
BstV2I GAAGAC 1 cut(s) 770
BstX2I RGATCY 3 cut(s) 28, 491, 745
BstYI RGATCY 3 cut(s) 28, 491, 745
BsuI GTATCC 2 cut(s) 856, 929
BtsCI GGATG 1 cut(s) 922
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 22, 142, 198
Cac8I GCNNGC 1 cut(s) 631
Cfr10I RCCGGY 2 cut(s) 245, 391
Cfr13I GGNCC 1 cut(s) 454
CseI GACGC 1 cut(s) 222
Csp6I GTAC 2 cut(s) 261, 670
CspAI ACCGGT 1 cut(s) 245
CspCI CAANNNNNGTGG 2 cut(s) 875, 910
CviAII CATG 2 cut(s) 487, 945
CviQI GTAC 2 cut(s) 261, 670
DdeI CTNAG 3 cut(s) 399, 428, 798
DpnI GATC 8 cut(s) 30, 149, 225, 493, 553, 747, 780, 825
DpnII GATC 8 cut(s) 28, 147, 223, 491, 551, 745, 778, 823
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 434
Eco24I GRGCYC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 454
Eco53kI GAGCTC 1 cut(s) 434
EcoICRI GAGCTC 1 cut(s) 434
EcoRI GAATTC 2 cut(s) 253, 738
EcoRII CCWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 436
FaeI CATG 2 cut(s) 490, 948
FalI AAGNNNNNCTT 4 cut(s) 834, 866, 923, 955
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 486, 944
Fnu4HI GCNGC 3 cut(s) 309, 597, 705
FokI GGATG 1 cut(s) 929
FriOI GRGCYC 1 cut(s) 436
Fsp4HI GCNGC 3 cut(s) 309, 597, 705
FspBI CTAG 3 cut(s) 371, 437, 956
GluI GCNGC 3 cut(s) 309, 597, 705
HapII CCGG 2 cut(s) 246, 392
HgaI GACGC 1 cut(s) 222
Hin1II CATG 2 cut(s) 490, 948
HincII GTYRAC 1 cut(s) 871
HindII GTYRAC 1 cut(s) 871
HinfI GANTC 1 cut(s) 815
HpaII CCGG 2 cut(s) 246, 392
HphI GGTGA 2 cut(s) 140, 482
Hpy166II GTNNAC 1 cut(s) 871
Hpy188I TCNGA 3 cut(s) 223, 400, 712
Hpy188III TCNNGA 3 cut(s) 95, 437, 743
Hpy8I GTNNAC 1 cut(s) 871
HpyAV CCTTC 1 cut(s) 908
HpyCH4IV ACGT 2 cut(s) 723, 792
HpyCH4V TGCA 9 cut(s) 104, 191, 243, 311, 596, 605, 629, 675, 944
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 305, 593, 602
HpyF3I CTNAG 3 cut(s) 399, 428, 798
HpySE526I ACGT 2 cut(s) 723, 792
Hsp92II CATG 2 cut(s) 490, 948
Kzo9I GATC 8 cut(s) 28, 147, 223, 491, 551, 745, 778, 823
LmnI GCTCC 2 cut(s) 297, 529
Lsp1109I GCAGC 3 cut(s) 295, 608, 691
LweI GCATC 1 cut(s) 592
MaeI CTAG 3 cut(s) 371, 437, 956
MaeII ACGT 2 cut(s) 723, 792
MaeIII GTNAC 3 cut(s) 10, 113, 793
MalI GATC 8 cut(s) 30, 149, 225, 493, 553, 747, 780, 825
MboI GATC 8 cut(s) 28, 147, 223, 491, 551, 745, 778, 823
MboII GAAGA 5 cut(s) 10, 23, 59, 687, 775
MflI RGATCY 3 cut(s) 28, 491, 745
MhlI GDGCHC 2 cut(s) 411, 436
MlyI GAGTC 1 cut(s) 824
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 6 cut(s) 26, 84, 394, 618, 728, 899
MseI TTAA 5 cut(s) 68, 156, 833, 852, 930
MslI CAYNNNNRTG 1 cut(s) 417
MspA1I CMGCKG 2 cut(s) 308, 704
MspCI CTTAAG 1 cut(s) 67
MspI CCGG 2 cut(s) 246, 392
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 4 cut(s) 203, 305, 593, 602
NdeII GATC 8 cut(s) 28, 147, 223, 491, 551, 745, 778, 823
NlaIII CATG 2 cut(s) 490, 948
NlaIV GGNNCC 2 cut(s) 207, 456
PinAI ACCGGT 1 cut(s) 245
PkrI GCNGC 3 cut(s) 310, 598, 706
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
Psp124BI GAGCTC 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 207, 456
PspPI GGNCC 1 cut(s) 454
PsrI GAACNNNNNNTAC 2 cut(s) 662, 694
PsuI RGATCY 3 cut(s) 28, 491, 745
PvuII CAGCTG 2 cut(s) 308, 704
RsaI GTAC 2 cut(s) 262, 671
RsaNI GTAC 2 cut(s) 261, 670
RseI CAYNNNNRTG 1 cut(s) 417
SacI GAGCTC 1 cut(s) 436
SaqAI TTAA 5 cut(s) 68, 156, 833, 852, 930
SatI GCNGC 3 cut(s) 309, 597, 705
Sau3AI GATC 8 cut(s) 28, 147, 223, 491, 551, 745, 778, 823
Sau96I GGNCC 1 cut(s) 454
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 1 cut(s) 824
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 2 cut(s) 411, 436
SfaNI GCATC 1 cut(s) 592
SfcI CTRYAG 1 cut(s) 699
SgrAI CRCCGGYG 1 cut(s) 245
SinI GGWCC 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SsiI CCGC 1 cut(s) 60
SspMI CTAG 3 cut(s) 371, 437, 956
SstI GAGCTC 1 cut(s) 436
StyD4I CCNGG 1 cut(s) 208
TaiI ACGT 2 cut(s) 726, 795
TaqI TCGA 2 cut(s) 742, 840
TatI WGTACW 1 cut(s) 669
Tru1I TTAA 5 cut(s) 68, 156, 833, 852, 930
Tru9I TTAA 5 cut(s) 68, 156, 833, 852, 930
TscAI CASTG 3 cut(s) 29, 149, 198
TseI GCWGC 3 cut(s) 308, 596, 704
TspDTI ATGAA 2 cut(s) 66, 679
TspRI CASTG 3 cut(s) 29, 149, 198
Vha464I CTTAAG 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 5 cut(s) 122, 253, 518, 685, 738
XbaI TCTAGA 1 cut(s) 436
XspI CTAG 3 cut(s) 371, 437, 956
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.