Rmu_co8284559.1_g000001

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8284559.1
Physical Location & Seq
Reverse (-)
2 .. 765
764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8284559.1_g000001.1.cds

Sequence Viewer

Length: 474 bp
atgcttgatttacacgactggaagcattttgaggcctatgcggaactttgttataaggaatttggtgatcgggtgaagcactggatcacattcaatgagccaattgccctcgctgtggctggttacggactcggggcattggcaccaggacgatgttccacttggataaaccccaactgcactggagggaattcagcgacggagccgtatctggtcacacattaccaactccttgctcatgcagctgcagttaacatgtataagaaacattatcaggagtcccaaaaaggactgatagggatcacgctggtggcagaatggttgataccaaattctacggcacagcacgaccaagttgctgcatttagagccctagattttatatttggatggtacatggaccctttgacaaatggtgactatcctaagagcatgagatctcttgtcggagaccgattgcctaagttcaagaaa

Protein Analysis

158

Amino Acids

17.87

Weight (kDa)

7.05

Isoelectric Point (pI)

25.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AccB1I GGYRCC 1 cut(s) 142
AciI CCGC 1 cut(s) 41
AclWI GGATC 2 cut(s) 92, 308
AcsI RAATTY 3 cut(s) 59, 190, 331
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 2 cut(s) 94, 469
AjnI CCWGG 1 cut(s) 145
AleI CACNNNNGTG 1 cut(s) 308
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 2 cut(s) 92, 308
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 242, 245, 359
ApoI RAATTY 3 cut(s) 59, 190, 331
AspS9I GGNCC 1 cut(s) 400
AsuHPI GGTGA 3 cut(s) 77, 85, 428
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 373
BbvI GCAGC 3 cut(s) 232, 254, 346
BccI CCATC 1 cut(s) 384
BceAI ACGGC 2 cut(s) 190, 354
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 246
BglII AGATCT 1 cut(s) 437
BisI GCNGC 3 cut(s) 243, 246, 360
BlsI GCNGC 3 cut(s) 244, 247, 361
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 3 cut(s) 144, 204, 402
BmrFI CCNGG 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 444
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 3 cut(s) 23, 86, 187
Bse8I GATNNNNATC 1 cut(s) 299
BseBI CCWGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 395
BseJI GATNNNNATC 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 115
BseNI ACTGG 3 cut(s) 23, 86, 187
BseXI GCAGC 3 cut(s) 232, 254, 346
BsgI GTGCAG 1 cut(s) 163
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 444
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 1 cut(s) 35
Bso31I GGTCTC 1 cut(s) 444
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 4 cut(s) 67, 84, 300, 437
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 35
BspLI GGNNCC 3 cut(s) 144, 204, 402
BspMAI CTGCAG 1 cut(s) 250
BspPI GGATC 2 cut(s) 92, 308
BspT107I GGYRCC 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 444
BsrI ACTGG 3 cut(s) 23, 86, 187
BssMI GATC 4 cut(s) 67, 84, 300, 437
Bst2UI CCWGG 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 426, 462
BstF5I GGATG 1 cut(s) 395
BstKTI GATC 4 cut(s) 70, 87, 303, 440
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 4 cut(s) 67, 84, 300, 437
BstMWI GCNNNNNNNGC 2 cut(s) 242, 368
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 232, 254, 346
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 395
BtsIMutI CAGTG 2 cut(s) 79, 180
Cfr13I GGNCC 1 cut(s) 400
Csp6I GTAC 1 cut(s) 394
CviAII CATG 4 cut(s) 239, 256, 397, 433
CviJI RGCY 6 cut(s) 35, 100, 119, 205, 245, 371
CviKI_1 RGCY 6 cut(s) 35, 100, 119, 205, 245, 371
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 2 cut(s) 426, 462
DpnI GATC 4 cut(s) 69, 86, 302, 439
DpnII GATC 4 cut(s) 67, 84, 300, 437
Eco147I AGGCCT 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 373
Eco31I GGTCTC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 400
Eco88I CYCGRG 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 373
FaeI CATG 4 cut(s) 242, 259, 400, 436
FaiI YATR 8 cut(s) 39, 54, 240, 257, 261, 383, 398, 434
FaqI GGGAC 1 cut(s) 265
FatI CATG 4 cut(s) 238, 255, 396, 432
Fnu4HI GCNGC 3 cut(s) 243, 246, 360
FokI GGATG 1 cut(s) 402
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 3 cut(s) 243, 246, 360
FspBI CTAG 1 cut(s) 374
GluI GCNGC 3 cut(s) 243, 246, 360
GsuI CTGGAG 1 cut(s) 204
HaeIII GGCC 1 cut(s) 35
Hin1II CATG 4 cut(s) 242, 259, 400, 436
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 2 cut(s) 129, 278
HpaI GTTAAC 1 cut(s) 253
HphI GGTGA 3 cut(s) 77, 85, 428
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 449
Hpy188III TCNNGA 2 cut(s) 275, 469
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 202
HpyCH4V TGCA 4 cut(s) 180, 242, 248, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 368
HpyF3I CTNAG 2 cut(s) 426, 462
Hsp92II CATG 4 cut(s) 242, 259, 400, 436
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 4 cut(s) 67, 84, 300, 437
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 9 cut(s) 4, 67, 105, 132, 159, 168, 197, 260, 293
Lsp1109I GCAGC 3 cut(s) 232, 254, 346
MaeI CTAG 1 cut(s) 374
MaeIII GTNAC 3 cut(s) 122, 214, 416
MalI GATC 4 cut(s) 69, 86, 302, 439
MboI GATC 4 cut(s) 67, 84, 300, 437
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 1 cut(s) 437
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 4 cut(s) 59, 102, 190, 331
MlyI GAGTC 2 cut(s) 123, 287
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 3 cut(s) 25, 119, 179
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 147
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 242, 368
NdeII GATC 4 cut(s) 67, 84, 300, 437
NlaIII CATG 4 cut(s) 242, 259, 400, 436
NlaIV GGNNCC 3 cut(s) 144, 204, 402
NmuCI GTSAC 2 cut(s) 214, 416
NspI RCATGY 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 308
PceI AGGCCT 1 cut(s) 35
PciI ACATGT 1 cut(s) 255
PkrI GCNGC 3 cut(s) 244, 247, 361
PleI GAGTC 2 cut(s) 123, 286
PpsI GAGTC 2 cut(s) 123, 286
PscI ACATGT 1 cut(s) 255
PsiI TTATAA 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 3 cut(s) 144, 204, 402
PspPI GGNCC 1 cut(s) 400
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 437
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 3 cut(s) 243, 246, 360
Sau3AI GATC 4 cut(s) 67, 84, 300, 437
Sau96I GGNCC 1 cut(s) 400
SchI GAGTC 2 cut(s) 123, 287
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 373
SetI ASST 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 4 cut(s) 59, 102, 190, 331
SseBI AGGCCT 1 cut(s) 35
SsiI CCGC 1 cut(s) 41
SspMI CTAG 1 cut(s) 374
StuI AGGCCT 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 145
TaqII GACCGA 1 cut(s) 468
TasI AATT 4 cut(s) 59, 102, 190, 331
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 2 cut(s) 86, 187
TseFI GTSAC 2 cut(s) 214, 416
TseI GCWGC 3 cut(s) 242, 245, 359
Tsp45I GTSAC 2 cut(s) 214, 416
TspGWI ACGGA 2 cut(s) 141, 215
TspRI CASTG 2 cut(s) 86, 187
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 3 cut(s) 59, 190, 331
XceI RCATGY 1 cut(s) 259
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.