Rroxscaffold_1G00000230

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
279592 .. 282588
2997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000230.1

Sequence Viewer

Length: 876 bp
ATGAAGAATATGAATTTGGATGCTTATAGGTTCTCTATCTCATGGTCAAGATTATTACCAAATGGAAAGCTAAGTGGGGGAGTGAACAAGGAAGGAGTCATGTACTACAACAATCTCATCAATGAACTCCTACGCAATGGTCTAAAGCCATTTGTGACCCTCTTTCATTTTGATCTTCCCCAATCTTTAGAAGACGAATATGGCGGTTTCTTAAGCCCTAACATTGTCAAGCATTTTCGGGACTATGCGGAGCTGTGTTACAAGGAATTTGGTGATCGGGTAAAGCACTGGATGACGTTGAATCAGCCATGGGCATACAGTAATGGTGGTTATGCAACCGGGTCAAAGGCACCAGGACGGTGTTCTGCGTGGCAGCAGCTAAATTGCACCGGCGGGGATTCGGGTACTGAACCATATTTGGTGGGACACCACCTACTCCTTTCTCATGCAGCTGCTGTAAAGTTGTACAGGCAGAAATATCAGGCATCTCAAAAAGGAGTTATAGGGGTGACCCATGTGTCTCACTGGTTCATTCCAATTTCAGGGGCAAAGCACAACAAAAATGCTGCCTTGCGATCTTTGGATTTTATGCTTGGATGGTTCATGGACCCTTTGACAAGCGGAGACTATCCACACAGCATGCGATCTCTCGTCAGAAACCGATTACCCAAATTCACAAAAGAACAATCCAAGTTACTAATCGGATCATTTGATTTTATTGGACTAAATTACTATACTACTTACTATGCAACATATACACCTCAGAACAATTCTTTAAATGCAAGCTACTTGACAGACGTTCGTGCTACTCAATCATTTGCGCTAAATGGCGTCCCCATTGGTCCACAGGCTATATGTTTATCCAAAAGGAATTAG

Protein Analysis

291

Amino Acids

32.87

Weight (kDa)

9.41

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 1 - 258 7.2e-83 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 517
AccB1I GGYRCC 1 cut(s) 349
AciI CCGC 4 cut(s) 204, 248, 393, 621
AclWI GGATC 1 cut(s) 712
AcsI RAATTY 3 cut(s) 13, 266, 671
AcyI GRCGYC 1 cut(s) 831
AfaI GTAC 3 cut(s) 104, 406, 467
AfiI CCNNNNNNNGG 1 cut(s) 542
AflII CTTAAG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 5 cut(s) 70, 253, 379, 452, 786
AluI AGCT 5 cut(s) 70, 253, 379, 452, 786
Alw26I GTCTC 2 cut(s) 525, 618
AlwI GGATC 1 cut(s) 712
AlwNI CAGNNNCTG 1 cut(s) 455
ApeKI GCWGC 5 cut(s) 373, 376, 449, 452, 566
ApoI RAATTY 3 cut(s) 13, 266, 671
AspLEI GCGC 1 cut(s) 823
AspS9I GGNCC 2 cut(s) 607, 842
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 2 cut(s) 284, 520
AvaII GGWCC 2 cut(s) 607, 842
BanI GGYRCC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 5 cut(s) 385, 388, 439, 461, 553
BccI CCATC 1 cut(s) 591
BciT130I CCWGG 1 cut(s) 354
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 525, 618
BfrI CTTAAG 1 cut(s) 211
BisI GCNGC 5 cut(s) 374, 377, 450, 453, 567
BlsI GCNGC 5 cut(s) 375, 378, 451, 454, 568
Bme1390I CCNGG 2 cut(s) 340, 354
Bme18I GGWCC 2 cut(s) 607, 842
BmgT120I GGNCC 2 cut(s) 607, 842
BmiI GGNNCC 2 cut(s) 351, 609
BmrFI CCNGG 2 cut(s) 340, 354
BmsI GCATC 2 cut(s) 10, 494
BpiI GAAGAC 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 340
BsaHI GRCGYC 1 cut(s) 831
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 2 cut(s) 293, 530
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 3 cut(s) 25, 297, 602
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 776
BseNI ACTGG 2 cut(s) 293, 530
BseXI GCAGC 5 cut(s) 385, 388, 439, 461, 553
BshNI GGYRCC 1 cut(s) 349
BsiSI CCGG 2 cut(s) 339, 390
BslFI GGGAC 3 cut(s) 254, 438, 818
BslI CCNNNNNNNGG 1 cut(s) 542
BsmAI GTCTC 2 cut(s) 525, 618
BsmFI GGGAC 3 cut(s) 254, 438, 818
Bsp1407I TGTACA 1 cut(s) 465
Bsp143I GATC 5 cut(s) 172, 274, 575, 644, 704
Bsp19I CCATGG 1 cut(s) 308
BspACI CCGC 4 cut(s) 204, 248, 393, 621
BspCNI CTCAG 1 cut(s) 775
BspLI GGNNCC 2 cut(s) 351, 609
BspPI GGATC 1 cut(s) 712
BspT107I GGYRCC 1 cut(s) 349
BspTI CTTAAG 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 389
BsrGI TGTACA 1 cut(s) 465
BsrI ACTGG 2 cut(s) 293, 530
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 5 cut(s) 172, 274, 575, 644, 704
BssNI GRCGYC 1 cut(s) 831
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 320, 360
BstACI GRCGYC 1 cut(s) 831
BstAFI CTTAAG 1 cut(s) 211
BstAUI TGTACA 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 641, 784
BstDEI CTNAG 2 cut(s) 71, 762
BstDSI CCRYGG 1 cut(s) 308
BstEII GGTNACC 1 cut(s) 508
BstF5I GGATG 3 cut(s) 25, 297, 602
BstHHI GCGC 1 cut(s) 823
BstKTI GATC 5 cut(s) 175, 277, 578, 647, 707
BstMAI GTCTC 2 cut(s) 525, 618
BstMBI GATC 5 cut(s) 172, 274, 575, 644, 704
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 643
BstPI GGTNACC 1 cut(s) 508
BstSCI CCNGG 2 cut(s) 338, 352
BstV1I GCAGC 5 cut(s) 385, 388, 439, 461, 553
BstV2I GAAGAC 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 308
BtsCI GGATG 3 cut(s) 25, 297, 602
BtsIMutI CAGTG 2 cut(s) 286, 523
Cac8I GCNNGC 2 cut(s) 641, 784
CaiI CAGNNNCTG 1 cut(s) 455
CfoI GCGC 1 cut(s) 823
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 2 cut(s) 607, 842
CseI GACGC 1 cut(s) 820
Csp6I GTAC 3 cut(s) 103, 405, 466
CviAII CATG 7 cut(s) 42, 100, 309, 446, 515, 604, 640
CviJI RGCY 9 cut(s) 70, 148, 216, 253, 307, 379, 452, 786, 851
CviKI_1 RGCY 9 cut(s) 70, 148, 216, 253, 307, 379, 452, 786, 851
CviQI GTAC 3 cut(s) 103, 405, 466
DdeI CTNAG 2 cut(s) 71, 762
DpnI GATC 5 cut(s) 174, 276, 577, 646, 706
DpnII GATC 5 cut(s) 172, 274, 575, 644, 704
DraI TTTAAA 1 cut(s) 777
DrdI GACNNNNNNGTC 1 cut(s) 517
DseDI GACNNNNNNGTC 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 308
Eco47I GGWCC 2 cut(s) 607, 842
Eco91I GGTNACC 1 cut(s) 508
EcoO65I GGTNACC 1 cut(s) 508
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 7 cut(s) 45, 103, 312, 449, 518, 607, 643
FaqI GGGAC 3 cut(s) 254, 438, 818
FatI CATG 7 cut(s) 41, 99, 308, 445, 514, 603, 639
FauI CCCGC 1 cut(s) 386
Fnu4HI GCNGC 5 cut(s) 374, 377, 450, 453, 567
FokI GGATG 3 cut(s) 32, 304, 609
Fsp4HI GCNGC 5 cut(s) 374, 377, 450, 453, 567
GlaI GCGC 1 cut(s) 822
GluI GCNGC 5 cut(s) 374, 377, 450, 453, 567
HapII CCGG 2 cut(s) 339, 390
HgaI GACGC 1 cut(s) 820
HhaI GCGC 1 cut(s) 823
Hin1I GRCGYC 1 cut(s) 831
Hin1II CATG 7 cut(s) 45, 103, 312, 449, 518, 607, 643
Hin6I GCGC 1 cut(s) 821
HinP1I GCGC 1 cut(s) 821
HinfI GANTC 3 cut(s) 96, 301, 398
HpaII CCGG 2 cut(s) 339, 390
HphI GGTGA 2 cut(s) 284, 520
Hpy166II GTNNAC 2 cut(s) 85, 845
Hpy188I TCNGA 3 cut(s) 656, 704, 765
Hpy188III TCNNGA 2 cut(s) 48, 239
Hpy8I GTNNAC 2 cut(s) 85, 845
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 2 cut(s) 320, 360
HpyCH4IV ACGT 2 cut(s) 296, 798
HpyCH4V TGCA 5 cut(s) 335, 387, 449, 749, 782
HpyF3I CTNAG 2 cut(s) 71, 762
HpySE526I ACGT 2 cut(s) 296, 798
Hsp92I GRCGYC 1 cut(s) 831
Hsp92II CATG 7 cut(s) 45, 103, 312, 449, 518, 607, 643
HspAI GCGC 1 cut(s) 821
Kzo9I GATC 5 cut(s) 172, 274, 575, 644, 704
LmnI GCTCC 1 cut(s) 250
Lsp1109I GCAGC 5 cut(s) 385, 388, 439, 461, 553
LweI GCATC 2 cut(s) 10, 494
MaeII ACGT 2 cut(s) 296, 798
MaeIII GTNAC 4 cut(s) 154, 257, 508, 693
MalI GATC 5 cut(s) 174, 276, 577, 646, 706
MboI GATC 5 cut(s) 172, 274, 575, 644, 704
MboII GAAGA 3 cut(s) 16, 167, 203
MluCI AATT 8 cut(s) 13, 266, 382, 537, 671, 727, 769, 871
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 2 cut(s) 170, 771
MseI TTAA 2 cut(s) 212, 776
MspA1I CMGCKG 1 cut(s) 452
MspCI CTTAAG 1 cut(s) 211
MspI CCGG 2 cut(s) 339, 390
MspR9I CCNGG 2 cut(s) 340, 354
MvaI CCWGG 1 cut(s) 354
NciI CCSGG 1 cut(s) 340
NcoI CCATGG 1 cut(s) 308
NdeII GATC 5 cut(s) 172, 274, 575, 644, 704
NlaIII CATG 7 cut(s) 45, 103, 312, 449, 518, 607, 643
NlaIV GGNNCC 2 cut(s) 351, 609
NmuCI GTSAC 2 cut(s) 154, 508
NspI RCATGY 1 cut(s) 643
PaeI GCATGC 1 cut(s) 643
PfeI GAWTC 2 cut(s) 301, 398
PkrI GCNGC 5 cut(s) 375, 378, 451, 454, 568
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 352
PspEI GGTNACC 1 cut(s) 508
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 351, 609
PspPI GGNCC 2 cut(s) 607, 842
PstNI CAGNNNCTG 1 cut(s) 455
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 3 cut(s) 104, 406, 467
RsaNI GTAC 3 cut(s) 103, 405, 466
SaqAI TTAA 2 cut(s) 212, 776
SatI GCNGC 5 cut(s) 374, 377, 450, 453, 567
Sau3AI GATC 5 cut(s) 172, 274, 575, 644, 704
Sau96I GGNCC 2 cut(s) 607, 842
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 340, 354
SfaNI GCATC 2 cut(s) 10, 494
SgrAI CRCCGGYG 1 cut(s) 389
SinI GGWCC 2 cut(s) 607, 842
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SphI GCATGC 1 cut(s) 643
Sse9I AATT 8 cut(s) 13, 266, 382, 537, 671, 727, 769, 871
SsiI CCGC 4 cut(s) 204, 248, 393, 621
StyD4I CCNGG 2 cut(s) 338, 352
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 320, 360
TaiI ACGT 2 cut(s) 299, 801
TasI AATT 8 cut(s) 13, 266, 382, 537, 671, 727, 769, 871
TatI WGTACW 2 cut(s) 102, 465
TfiI GAWTC 2 cut(s) 301, 398
Tru1I TTAA 2 cut(s) 212, 776
Tru9I TTAA 2 cut(s) 212, 776
TscAI CASTG 2 cut(s) 293, 530
TseFI GTSAC 2 cut(s) 154, 508
TseI GCWGC 5 cut(s) 373, 376, 449, 452, 566
Tsp45I GTSAC 2 cut(s) 154, 508
TspDTI ATGAA 6 cut(s) 17, 26, 138, 155, 520, 592
TspRI CASTG 2 cut(s) 293, 530
Vha464I CTTAAG 1 cut(s) 211
VpaK11BI GGWCC 2 cut(s) 607, 842
XapI RAATTY 3 cut(s) 13, 266, 671
XceI RCATGY 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.