pycom05g09730

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
12961599 .. 12962025
427 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g09730.1

Sequence Viewer

Length: 288 bp
ATGTTTGGATGGTTTTTGGACCCGTTAACAAGTGGTGACTATCCACACACCATGCGATCAATTGTTGGAAAAAGATTGCCAAAATTCACAAAAGAACAATCCAAGTTGCTAAACGGATCGTTTGATTTTCTTGGAATAAATTATTATACTGCTAGATACGCAACTAGTACACCGAAGAACAATTCACTACAGGCAAGCTTCGTAACAGACCCTCAAGCTGATCTTACAAGTGAGTGCGAAAGGAAACTTACTTTCAATAGCTTAAGTTCTTTGTTCTTCTTGACCTAG

Protein Analysis

96

Amino Acids

10.8

Weight (kDa)

8.82

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 2 - 74 8.3e-14 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 169
AflII CTTAAG 1 cut(s) 262
AgsI TTSAA 1 cut(s) 256
AhlI ACTAGT 1 cut(s) 164
AluBI AGCT 3 cut(s) 198, 218, 261
AluI AGCT 3 cut(s) 198, 218, 261
AlwI GGATC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 47
AvaII GGWCC 1 cut(s) 19
BccI CCATC 1 cut(s) 3
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 3 cut(s) 153, 165, 286
BfmI CTRYAG 1 cut(s) 188
BfrI CTTAAG 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 198
BseGI GGATG 1 cut(s) 14
Bsp143I GATC 3 cut(s) 56, 116, 220
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 1 cut(s) 124
BspTI CTTAAG 1 cut(s) 262
BssMI GATC 3 cut(s) 56, 116, 220
BstAFI CTTAAG 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 196
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 3 cut(s) 59, 119, 223
BstMBI GATC 3 cut(s) 56, 116, 220
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 168
CviAII CATG 1 cut(s) 52
CviJI RGCY 3 cut(s) 198, 218, 261
CviKI_1 RGCY 3 cut(s) 198, 218, 261
CviQI GTAC 1 cut(s) 168
DpnI GATC 3 cut(s) 58, 118, 222
DpnII GATC 3 cut(s) 56, 116, 220
Eco47I GGWCC 1 cut(s) 19
FaeI CATG 1 cut(s) 55
FaiI YATR 2 cut(s) 53, 147
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 1 cut(s) 51
FokI GGATG 1 cut(s) 21
FspBI CTAG 3 cut(s) 153, 165, 286
Hin1II CATG 1 cut(s) 55
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 196
HpaI GTTAAC 1 cut(s) 27
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 27, 170
Hpy188III TCNNGA 1 cut(s) 280
Hpy8I GTNNAC 2 cut(s) 27, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 1 cut(s) 55
KspAI GTTAAC 1 cut(s) 27
Kzo9I GATC 3 cut(s) 56, 116, 220
LpnPI CCDG 1 cut(s) 176
MaeI CTAG 3 cut(s) 153, 165, 286
MaeIII GTNAC 2 cut(s) 35, 202
MalI GATC 3 cut(s) 58, 118, 222
MboI GATC 3 cut(s) 56, 116, 220
MboII GAAGA 2 cut(s) 187, 268
MfeI CAATTG 1 cut(s) 60
MluCI AATT 4 cut(s) 60, 83, 139, 181
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 1 cut(s) 222
MseI TTAA 2 cut(s) 26, 263
MspCI CTTAAG 1 cut(s) 262
MunI CAATTG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 3 cut(s) 56, 116, 220
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 19
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 26, 263
Sau3AI GATC 3 cut(s) 56, 116, 220
Sau96I GGNCC 1 cut(s) 19
SetI ASST 4 cut(s) 200, 220, 263, 287
SfcI CTRYAG 1 cut(s) 188
SinI GGWCC 1 cut(s) 19
SmlI CTYRAG 2 cut(s) 213, 262
SmoI CTYRAG 2 cut(s) 213, 262
SpeI ACTAGT 1 cut(s) 164
Sse9I AATT 4 cut(s) 60, 83, 139, 181
SspMI CTAG 3 cut(s) 153, 165, 286
TasI AATT 4 cut(s) 60, 83, 139, 181
TatI WGTACW 1 cut(s) 167
Tru1I TTAA 2 cut(s) 26, 263
Tru9I TTAA 2 cut(s) 26, 263
TseFI GTSAC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 129
Vha464I CTTAAG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 1 cut(s) 83
XspI CTAG 3 cut(s) 153, 165, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.