Rorug05G0457600

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
63054048 .. 63054221
174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0457600.1

Sequence Viewer

Length: 174 bp
ATGGCCTCGTCGGCAACGAGAACGCCGTCGACTGGATCACCGCCACCGAGCGCCACTTCGCCTACCTCGACATCCCCGCCGCTGACTGAGTCAAGATCGCCGCCACTCGCTTGCGCGGCGACCAGAGCCCCTGGATGTGCTGGTACGAGTCTCGTTTCAGGTATGAGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

57

Amino Acids

5.45

Weight (kDa)

9.01

Isoelectric Point (pI)

100.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 29
AccII CGCG 1 cut(s) 116
AciI CCGC 5 cut(s) 41, 77, 80, 101, 116
AclWI GGATC 1 cut(s) 43
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 32
AjnI CCWGG 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 43
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 2 cut(s) 53, 116
AsuHPI GGTGA 1 cut(s) 30
BanII GRGCYC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 54
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 3 cut(s) 80, 101, 117
BlsI GCNGC 3 cut(s) 81, 102, 118
Bme1390I CCNGG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 2 cut(s) 71, 140
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 35, 95
BspACI CCGC 5 cut(s) 41, 77, 80, 101, 116
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 79
BspFNI CGCG 1 cut(s) 116
BspPI GGATC 1 cut(s) 43
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 35, 95
Bst2UI CCWGG 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 71, 140
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 2 cut(s) 53, 116
BstKTI GATC 2 cut(s) 38, 98
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 35, 95
BstMWI GCNNNNNNNGC 3 cut(s) 11, 116, 125
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstUI CGCG 1 cut(s) 116
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 71, 140
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 2 cut(s) 53, 116
Csp6I GTAC 1 cut(s) 144
CviJI RGCY 2 cut(s) 5, 128
CviKI_1 RGCY 2 cut(s) 5, 128
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 87
DpnI GATC 2 cut(s) 37, 97
DpnII GATC 2 cut(s) 35, 95
Eco24I GRGCYC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 130
FaiI YATR 2 cut(s) 164, 172
FauI CCCGC 1 cut(s) 84
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 3 cut(s) 80, 101, 117
FokI GGATG 2 cut(s) 58, 147
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 80, 101, 117
GlaI GCGC 2 cut(s) 52, 115
GluI GCNGC 3 cut(s) 80, 101, 117
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 2 cut(s) 53, 116
Hin6I GCGC 2 cut(s) 51, 114
HinP1I GCGC 2 cut(s) 51, 114
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 89, 148
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 93
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 2 cut(s) 13, 31
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 116, 125
HpyF3I CTNAG 1 cut(s) 87
HspAI GCGC 2 cut(s) 51, 114
Kzo9I GATC 2 cut(s) 35, 95
LpnPI CCDG 6 cut(s) 18, 117, 126, 136, 144, 144
MalI GATC 2 cut(s) 37, 97
MboI GATC 2 cut(s) 35, 95
MhlI GDGCHC 1 cut(s) 130
MlyI GAGTC 2 cut(s) 98, 157
MnlI CCTC 2 cut(s) 16, 76
MspA1I CMGCKG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 11, 116, 125
NdeII GATC 2 cut(s) 35, 95
PcsI WCGNNNNNNNCGW 3 cut(s) 14, 23, 65
PflFI GACNNNGTC 1 cut(s) 88
PkrI GCNGC 3 cut(s) 81, 102, 118
PleI GAGTC 2 cut(s) 97, 156
PpsI GAGTC 2 cut(s) 97, 156
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PsyI GACNNNGTC 1 cut(s) 88
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SalI GTCGAC 1 cut(s) 28
SatI GCNGC 3 cut(s) 80, 101, 117
Sau3AI GATC 2 cut(s) 35, 95
SchI GAGTC 2 cut(s) 98, 157
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 130
SetI ASST 2 cut(s) 68, 163
SsiI CCGC 5 cut(s) 41, 77, 80, 101, 116
StyD4I CCNGG 1 cut(s) 130
TaqI TCGA 2 cut(s) 29, 68
TauI GCSGC 3 cut(s) 82, 103, 119
Tth111I GACNNNGTC 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.