Rh5DG546300

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
83963321 .. 83965442
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG546300.1

Sequence Viewer

Length: 246 bp
ATGGCACACCACCTACTTCTTGCTCATGCAGCTGCTGTAAAGTTGTACAAGCGAAAATATCAGGCATCTCAAAAAGGAGTTATAGGTATAACCCTAGTGTGTGACTGGTTAATTCCAATTTCAGAGGCAAAGCAGAACAAAGATGCAGCCTTACGATCTTTGGATTTTGTGTTTGGATGTGACACCCAAAAGAGATACCTGCATGATCTTTCAGACTATCGTCAAAGAGTAGCCAGCCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

9.21

Weight (kDa)

9.26

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 2 - 59 1.5e-08 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AfaI GTAC 1 cut(s) 47
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
AlwNI CAGNNNCTG 1 cut(s) 35
ApeKI GCWGC 3 cut(s) 29, 32, 146
BbvI GCAGC 3 cut(s) 19, 41, 158
BfaI CTAG 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 207
BisI GCNGC 3 cut(s) 30, 33, 147
BlsI GCNGC 3 cut(s) 31, 34, 148
BmsI GCATC 2 cut(s) 74, 133
BoxI GACNNNNGTC 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 110
BseGI GGATG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 110
BseXI GCAGC 3 cut(s) 19, 41, 158
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 2 cut(s) 155, 205
BspMI ACCTGC 1 cut(s) 207
BsrGI TGTACA 1 cut(s) 45
BsrI ACTGG 1 cut(s) 110
BssMI GATC 2 cut(s) 155, 205
BstAUI TGTACA 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 235
BstF5I GGATG 1 cut(s) 182
BstKTI GATC 2 cut(s) 158, 208
BstMBI GATC 2 cut(s) 155, 205
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstPAI GACNNNNGTC 1 cut(s) 219
BstV1I GCAGC 3 cut(s) 19, 41, 158
BtsCI GGATG 1 cut(s) 182
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 235
CaiI CAGNNNCTG 1 cut(s) 35
Csp6I GTAC 1 cut(s) 46
CviAII CATG 2 cut(s) 26, 203
CviJI RGCY 4 cut(s) 32, 149, 233, 237
CviKI_1 RGCY 4 cut(s) 32, 149, 233, 237
CviQI GTAC 1 cut(s) 46
DpnI GATC 2 cut(s) 157, 207
DpnII GATC 2 cut(s) 155, 205
FaeI CATG 2 cut(s) 29, 206
FaiI YATR 4 cut(s) 27, 83, 89, 204
FatI CATG 2 cut(s) 25, 202
Fnu4HI GCNGC 3 cut(s) 30, 33, 147
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 30, 33, 147
FspBI CTAG 1 cut(s) 95
GluI GCNGC 3 cut(s) 30, 33, 147
Hin1II CATG 2 cut(s) 29, 206
Hpy188I TCNGA 2 cut(s) 124, 214
HpyCH4V TGCA 3 cut(s) 29, 146, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
Hsp92II CATG 2 cut(s) 29, 206
Kzo9I GATC 2 cut(s) 155, 205
LpnPI CCDG 3 cut(s) 47, 91, 212
Lsp1109I GCAGC 3 cut(s) 19, 41, 158
LweI GCATC 2 cut(s) 74, 133
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 101, 179
MalI GATC 2 cut(s) 157, 207
MboI GATC 2 cut(s) 155, 205
MluCI AATT 2 cut(s) 111, 117
MnlI CCTC 1 cut(s) 118
MseI TTAA 2 cut(s) 110, 244
MspA1I CMGCKG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 2 cut(s) 155, 205
NlaIII CATG 2 cut(s) 29, 206
NmuCI GTSAC 2 cut(s) 101, 179
PkrI GCNGC 3 cut(s) 31, 34, 148
PshAI GACNNNNGTC 1 cut(s) 219
PstNI CAGNNNCTG 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 2 cut(s) 110, 244
SatI GCNGC 3 cut(s) 30, 33, 147
Sau3AI GATC 2 cut(s) 155, 205
SetI ASST 4 cut(s) 15, 34, 88, 201
SfaNI GCATC 2 cut(s) 74, 133
SgeI CNNG 8 cut(s) 32, 38, 61, 74, 107, 118, 211, 215
Sse9I AATT 2 cut(s) 111, 117
SspMI CTAG 1 cut(s) 95
TasI AATT 2 cut(s) 111, 117
TatI WGTACW 1 cut(s) 45
Tru1I TTAA 2 cut(s) 110, 244
Tru9I TTAA 2 cut(s) 110, 244
TseFI GTSAC 2 cut(s) 101, 179
TseI GCWGC 3 cut(s) 29, 32, 146
Tsp45I GTSAC 2 cut(s) 101, 179
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.