Rh6BG198200

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
37254194 .. 37264050
9857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG198200.1

Sequence Viewer

Length: 1122 bp
ATGGGAAAGAAAAGGATCACGGATGGAAGCAATGGAGATGTGGCTAATGATCAATATCACCACTATAAGGAAGATGTGGGGATTATGAAGAATATGAATTTGGATGCTTATAGGTTCTCTATCTCATGGTCAAGATTGTTACCAAATGGAAAGCTAAGTGGGGGAGTGAACAAGGAAGGAGTCAAGTACTACAACAATTTCATCAATGAACTCCTAAGCAATGGTCTAAAGCCATTTTTGACCCTCTTTCATTGGGATCTTCCCCAAACTTTAGAAGACGAATATGGCGGTTTCTTAAGCCCTAACGTTGTCAAGCATTTTCGGGACTATGCGGAGCTGTGTTACAAGGAATTTGGTGATCGGGCATCTCAAAAAGGAGTTATAGGAGTGACCCTAAATTCTCCCTGGTTCATTCCAATTTCAGAGGCAAAGCACAACAAAAATGCTGCCTTACGATCTTTGGATTTTATATTTGGATGGTTCATGGACCCTTTGACAAACGGAGACTATCCACACAGCATGCGATCTCTCGTCGGAAATCGATTACCCAAATTCACAAAAGAACAATCCAAGTTACTAATCGGGTCATTTGATTTTCTTGGACTAAATTACTATACTACTTACTATGCAACATACACACCTCAGAACAATTCTTTAAATGCAAGCTACTTGACAGACGCTCGTGCTACTCAATCATTTGCGCTAAATGGCATCCCCATTGGTCCACAGGCTGCTTCATCATGGCTATATGTTTATCCAAAAGGAATTAGAGACCTTTTACTCTACACAAAGACAAAGTATAATGATCCACTTATTTACATTACTGAGAATGGCATTGATGAGTTCAATGATCCCAAATTATCACTTGAGGAAGCCCTCTATGATACTCAGAGAGTTGACTATTACTTCCGCCACCTCTATTACCTTCAAAAAGCAATCAAGGAAGGTGTGAACTTAAAGGGTTACTTTGCATGGTCATTGCTAGACAACTTTGAATGGGCTTCTGGTTACACAATTCGATTCGATTTGGTATCAACTATGTGGATTACAAAAAAGGAAATAAAAGGCACCCAAAACTCTCAACACATTGGTTCAAAAACTTCCTCAAGAAGTATTGATTGA

Protein Analysis

373

Amino Acids

42.87

Weight (kDa)

8.25

Isoelectric Point (pI)

27.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 4 - 121 3.2e-48 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 123 - 344 1.4e-54 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1067
AciI CCGC 3 cut(s) 288, 332, 910
AclI AACGTT 1 cut(s) 306
AclWI GGATC 4 cut(s) 23, 264, 800, 845
AcsI RAATTY 4 cut(s) 97, 350, 397, 551
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 67
AflII CTTAAG 1 cut(s) 295
AgsI TTSAA 4 cut(s) 847, 929, 995, 1095
AjnI CCWGG 1 cut(s) 404
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 3 cut(s) 154, 337, 666
AluI AGCT 3 cut(s) 154, 337, 666
Alw26I GTCTC 2 cut(s) 498, 765
AlwI GGATC 4 cut(s) 23, 264, 800, 845
ApeKI GCWGC 2 cut(s) 446, 731
ApoI RAATTY 4 cut(s) 97, 350, 397, 551
AspLEI GCGC 1 cut(s) 703
AspS9I GGNCC 2 cut(s) 487, 722
AsuHPI GGTGA 2 cut(s) 50, 368
AvaII GGWCC 2 cut(s) 487, 722
BanI GGYRCC 1 cut(s) 1067
BauI CACGAG 1 cut(s) 681
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 433, 718
BccI CCATC 2 cut(s) 17, 471
BciT130I CCWGG 1 cut(s) 406
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 498, 765
BfaI CTAG 1 cut(s) 983
BfrI CTTAAG 1 cut(s) 295
BisI GCNGC 2 cut(s) 447, 732
BlsI GCNGC 2 cut(s) 448, 733
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 406
Bme18I GGWCC 2 cut(s) 487, 722
BmgT120I GGNCC 2 cut(s) 487, 722
BmiI GGNNCC 2 cut(s) 489, 1069
BmrFI CCNGG 1 cut(s) 406
BmsI GCATC 3 cut(s) 94, 374, 720
BpiI GAAGAC 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 215
BpuEI CTTGAG 2 cut(s) 887, 1090
Bsa29I ATCGAT 1 cut(s) 541
BsaBI GATNNNNATC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 1 cut(s) 404
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse3DI GCAATG 3 cut(s) 37, 226, 977
Bse8I GATNNNNATC 1 cut(s) 54
BseBI CCWGG 1 cut(s) 406
BseCI ATCGAT 1 cut(s) 541
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 4 cut(s) 28, 109, 482, 711
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMI GCAATG 3 cut(s) 37, 226, 977
BseMII CTCAG 3 cut(s) 656, 816, 902
BseXI GCAGC 2 cut(s) 433, 718
BshNI GGYRCC 1 cut(s) 1067
BshVI ATCGAT 1 cut(s) 541
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 498, 765
BsmFI GGGAC 1 cut(s) 338
Bso31I GGTCTC 1 cut(s) 765
Bsp143I GATC 8 cut(s) 15, 49, 256, 358, 455, 524, 805, 850
BspACI CCGC 3 cut(s) 288, 332, 910
BspCNI CTCAG 3 cut(s) 655, 817, 901
BspDI ATCGAT 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 489, 1069
BspPI GGATC 4 cut(s) 23, 264, 800, 845
BspT107I GGYRCC 1 cut(s) 1067
BspTI CTTAAG 1 cut(s) 295
BspTNI GGTCTC 1 cut(s) 765
BsrDI GCAATG 3 cut(s) 37, 226, 977
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 8 cut(s) 15, 49, 256, 358, 455, 524, 805, 850
BssSI CACGAG 1 cut(s) 681
Bst2BI CACGAG 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 406
BstAFI CTTAAG 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 521, 664
BstDEI CTNAG 5 cut(s) 155, 215, 642, 825, 888
BstF5I GGATG 4 cut(s) 28, 109, 482, 711
BstHHI GCGC 1 cut(s) 703
BstKTI GATC 8 cut(s) 18, 52, 259, 361, 458, 527, 808, 853
BstMAI GTCTC 2 cut(s) 498, 765
BstMBI GATC 8 cut(s) 15, 49, 256, 358, 455, 524, 805, 850
BstNI CCWGG 1 cut(s) 406
BstNSI RCATGY 1 cut(s) 523
BstSCI CCNGG 1 cut(s) 404
BstV1I GCAGC 2 cut(s) 433, 718
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
Bsu15I ATCGAT 1 cut(s) 541
BsuTUI ATCGAT 1 cut(s) 541
BtsCI GGATG 4 cut(s) 28, 109, 482, 711
Cac8I GCNNGC 2 cut(s) 521, 664
CfoI GCGC 1 cut(s) 703
Cfr13I GGNCC 2 cut(s) 487, 722
ClaI ATCGAT 1 cut(s) 541
CseI GACGC 1 cut(s) 686
Csp6I GTAC 1 cut(s) 187
CviAII CATG 5 cut(s) 126, 484, 520, 741, 972
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 5 cut(s) 155, 215, 642, 825, 888
DpnI GATC 8 cut(s) 17, 51, 258, 360, 457, 526, 807, 852
DpnII GATC 8 cut(s) 15, 49, 256, 358, 455, 524, 805, 850
DraI TTTAAA 1 cut(s) 657
EciI GGCGGA 1 cut(s) 899
Eco31I GGTCTC 1 cut(s) 765
Eco47I GGWCC 2 cut(s) 487, 722
EcoRII CCWGG 1 cut(s) 404
FaeI CATG 5 cut(s) 129, 487, 523, 744, 975
FalI AAGNNNNNCTT 2 cut(s) 950, 982
FaqI GGGAC 1 cut(s) 338
FatI CATG 5 cut(s) 125, 483, 519, 740, 971
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 447, 732
FokI GGATG 4 cut(s) 35, 116, 489, 698
Fsp4HI GCNGC 2 cut(s) 447, 732
FspBI CTAG 1 cut(s) 983
GlaI GCGC 1 cut(s) 702
GluI GCNGC 2 cut(s) 447, 732
HgaI GACGC 1 cut(s) 686
HhaI GCGC 1 cut(s) 703
Hin1II CATG 5 cut(s) 129, 487, 523, 744, 975
Hin6I GCGC 1 cut(s) 701
HinP1I GCGC 1 cut(s) 701
HincII GTYRAC 1 cut(s) 898
HindII GTYRAC 1 cut(s) 898
HinfI GANTC 2 cut(s) 180, 1020
HphI GGTGA 2 cut(s) 50, 368
Hpy166II GTNNAC 4 cut(s) 169, 725, 898, 952
Hpy188I TCNGA 4 cut(s) 424, 536, 645, 891
Hpy188III TCNNGA 3 cut(s) 132, 323, 1107
Hpy8I GTNNAC 4 cut(s) 169, 725, 898, 952
Hpy99I CGWCG 1 cut(s) 536
HpyAV CCTTC 3 cut(s) 170, 935, 938
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 629, 662, 971
HpyF3I CTNAG 5 cut(s) 155, 215, 642, 825, 888
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 5 cut(s) 129, 487, 523, 744, 975
HspAI GCGC 1 cut(s) 701
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 8 cut(s) 15, 49, 256, 358, 455, 524, 805, 850
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 4 cut(s) 391, 418, 713, 990
Lsp1109I GCAGC 2 cut(s) 433, 718
LweI GCATC 3 cut(s) 94, 374, 720
MaeI CTAG 1 cut(s) 983
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 6 cut(s) 138, 341, 388, 573, 962, 1007
MalI GATC 8 cut(s) 17, 51, 258, 360, 457, 526, 807, 852
MboI GATC 8 cut(s) 15, 49, 256, 358, 455, 524, 805, 850
MboII GAAGA 4 cut(s) 83, 100, 251, 287
MflI RGATCY 1 cut(s) 256
MlyI GAGTC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 514
MnlI CCTC 7 cut(s) 254, 418, 651, 862, 887, 926, 1114
MseI TTAA 3 cut(s) 296, 656, 956
MspCI CTTAAG 1 cut(s) 295
MspR9I CCNGG 1 cut(s) 406
MvaI CCWGG 1 cut(s) 406
NdeII GATC 8 cut(s) 15, 49, 256, 358, 455, 524, 805, 850
NlaIII CATG 5 cut(s) 129, 487, 523, 744, 975
NlaIV GGNNCC 2 cut(s) 489, 1069
NmuCI GTSAC 1 cut(s) 388
NspI RCATGY 1 cut(s) 523
PaeI GCATGC 1 cut(s) 523
PfeI GAWTC 1 cut(s) 1020
PkrI GCNGC 2 cut(s) 448, 733
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp1406I AACGTT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 404
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 2 cut(s) 489, 1069
PspPI GGNCC 2 cut(s) 487, 722
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 3 cut(s) 296, 656, 956
SatI GCNGC 2 cut(s) 447, 732
Sau3AI GATC 8 cut(s) 15, 49, 256, 358, 455, 524, 805, 850
Sau96I GGNCC 2 cut(s) 487, 722
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 406
SfaNI GCATC 3 cut(s) 94, 374, 720
SinI GGWCC 2 cut(s) 487, 722
SmlI CTYRAG 3 cut(s) 295, 866, 1105
SmoI CTYRAG 3 cut(s) 295, 866, 1105
SphI GCATGC 1 cut(s) 523
SsiI CCGC 3 cut(s) 288, 332, 910
SspMI CTAG 1 cut(s) 983
StyD4I CCNGG 1 cut(s) 404
TaiI ACGT 1 cut(s) 309
TaqI TCGA 3 cut(s) 541, 1018, 1023
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 1 cut(s) 1020
Tru1I TTAA 3 cut(s) 296, 656, 956
Tru9I TTAA 3 cut(s) 296, 656, 956
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 2 cut(s) 446, 731
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 8 cut(s) 101, 110, 190, 222, 239, 400, 472, 726
TspGWI ACGGA 2 cut(s) 35, 516
Vha464I CTTAAG 1 cut(s) 295
VpaK11BI GGWCC 2 cut(s) 487, 722
XapI RAATTY 4 cut(s) 97, 350, 397, 551
XceI RCATGY 1 cut(s) 523
XspI CTAG 1 cut(s) 983
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.