pycom11g09490

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
7728514 .. 7729622
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g09490.6

Sequence Viewer

Length: 576 bp
ATGGATTTTATGTTTGGATGGTTTATGGATCCAATTACAAGAGGTGACTACCCGTACACCATGCAATACCTTGTTAGAGAACGATTGCCAAAATTCACGGAAGAAGAATCCAAGATGTTAACTGGGTCTTTTGATTTTGTTGGATTGAACTATTATACTGCTCTATATGCAACTGATGTACCTAAGAATTATTCTAAACCTGCAAGTTACTTATACGATCCACATGTTATTACAATGACTGAACGTGATGGCATTCCTATTGGTCCTCAGGCTGCTTCGGACTGGTTATATGTTTATCCAAAAGGAATTCACGATTTTGTACTCTACACGAAGAATAAGTATGGTGATCCAATCATTTACATTACTGAGAATGGCGTTGATGAGTTCAATGATTCCACCTTATCACTAGAGGAAGCCCTCCATGATCCCAATAGGACTGACTACTACAATCGCCACCTCTGTTACCTTCAAGCAGCAATCAAGAAGGGTAGTAATGTGAAAGGATACTTTGCATGGGCAATTTTAGACAACTTTCAATGGAGTGAAGGTTACACAGTTCGATTTGGTATTAACTAA

Protein Analysis

192

Amino Acids

22.31

Weight (kDa)

4.92

Isoelectric Point (pI)

25.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 208
AclWI GGATC 5 cut(s) 23, 36, 212, 341, 419
AcsI RAATTY 2 cut(s) 92, 306
AfaI GTAC 3 cut(s) 56, 180, 321
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 4 cut(s) 148, 388, 470, 536
AlwI GGATC 5 cut(s) 23, 36, 212, 341, 419
ApeKI GCWGC 2 cut(s) 272, 473
ApoI RAATTY 2 cut(s) 92, 306
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 56, 356
AvaII GGWCC 1 cut(s) 263
AxyI CCTNAGG 1 cut(s) 267
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BamHI GGATCC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 259, 485
BccI CCATC 2 cut(s) 12, 242
BciVI GTATCC 1 cut(s) 497
BfaI CTAG 1 cut(s) 407
BfuAI ACCTGC 1 cut(s) 208
BfuI GTATCC 1 cut(s) 497
BisI GCNGC 2 cut(s) 273, 474
BlsI GCNGC 2 cut(s) 274, 475
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bse1I ACTGG 2 cut(s) 127, 287
Bse21I CCTNAGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 23
BseMII CTCAG 2 cut(s) 281, 357
BseNI ACTGG 2 cut(s) 127, 287
BseXI GCAGC 2 cut(s) 259, 485
BsmI GAATGC 1 cut(s) 252
Bsp143I GATC 4 cut(s) 28, 217, 346, 424
BspCNI CTCAG 2 cut(s) 280, 358
BspLI GGNNCC 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 5 cut(s) 23, 36, 212, 341, 419
BsrI ACTGG 2 cut(s) 127, 287
BssMI GATC 4 cut(s) 28, 217, 346, 424
Bst4CI ACNGT 1 cut(s) 556
BstDEI CTNAG 3 cut(s) 183, 267, 366
BstF5I GGATG 1 cut(s) 23
BstKTI GATC 4 cut(s) 31, 220, 349, 427
BstMBI GATC 4 cut(s) 28, 217, 346, 424
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 259, 485
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
Bsu36I CCTNAGG 1 cut(s) 267
BsuI GTATCC 1 cut(s) 497
BtsCI GGATG 1 cut(s) 23
BveI ACCTGC 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 3 cut(s) 55, 179, 320
CviAII CATG 4 cut(s) 61, 224, 422, 513
CviJI RGCY 2 cut(s) 272, 416
CviKI_1 RGCY 2 cut(s) 272, 416
CviQI GTAC 3 cut(s) 55, 179, 320
DdeI CTNAG 3 cut(s) 183, 267, 366
DpnI GATC 4 cut(s) 30, 219, 348, 426
DpnII GATC 4 cut(s) 28, 217, 346, 424
Eco47I GGWCC 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 306
FaeI CATG 4 cut(s) 64, 227, 425, 516
FatI CATG 4 cut(s) 60, 223, 421, 512
Fnu4HI GCNGC 2 cut(s) 273, 474
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 273, 474
FspBI CTAG 1 cut(s) 407
GluI GCNGC 2 cut(s) 273, 474
Hin1II CATG 4 cut(s) 64, 227, 425, 516
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 2 cut(s) 107, 392
HpaI GTTAAC 1 cut(s) 120
HphI GGTGA 2 cut(s) 56, 356
Hpy166II GTNNAC 2 cut(s) 57, 120
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 2 cut(s) 311, 481
Hpy8I GTNNAC 2 cut(s) 57, 120
HpyAV CCTTC 3 cut(s) 476, 478, 539
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 4 cut(s) 64, 170, 203, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 3 cut(s) 183, 267, 366
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 4 cut(s) 64, 227, 425, 516
KspAI GTTAAC 1 cut(s) 120
Kzo9I GATC 4 cut(s) 28, 217, 346, 424
LpnPI CCDG 4 cut(s) 108, 213, 254, 268
Lsp1109I GCAGC 2 cut(s) 259, 485
MaeI CTAG 1 cut(s) 407
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 4 cut(s) 44, 206, 461, 548
MalI GATC 4 cut(s) 30, 219, 348, 426
MboI GATC 4 cut(s) 28, 217, 346, 424
MboII GAAGA 3 cut(s) 113, 116, 343
MflI RGATCY 1 cut(s) 28
MluCI AATT 5 cut(s) 33, 92, 187, 306, 519
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 5 cut(s) 35, 276, 403, 428, 467
MseI TTAA 2 cut(s) 119, 570
Mva1269I GAATGC 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 4 cut(s) 28, 217, 346, 424
NlaIII CATG 4 cut(s) 64, 227, 425, 516
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 44
NspI RCATGY 1 cut(s) 227
PciI ACATGT 1 cut(s) 223
PctI GAATGC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 107, 392
PkrI GCNGC 2 cut(s) 274, 475
PscI ACATGT 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 263
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 3 cut(s) 56, 180, 321
RsaNI GTAC 3 cut(s) 55, 179, 320
SaqAI TTAA 2 cut(s) 119, 570
SatI GCNGC 2 cut(s) 273, 474
Sau3AI GATC 4 cut(s) 28, 217, 346, 424
Sau96I GGNCC 1 cut(s) 263
SetI ASST 9 cut(s) 46, 72, 184, 202, 247, 401, 459, 468, 550
SinI GGWCC 1 cut(s) 263
Sse9I AATT 5 cut(s) 33, 92, 187, 306, 519
SspMI CTAG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 559
TasI AATT 5 cut(s) 33, 92, 187, 306, 519
TatI WGTACW 1 cut(s) 319
TfiI GAWTC 2 cut(s) 107, 392
Tru1I TTAA 2 cut(s) 119, 570
Tru9I TTAA 2 cut(s) 119, 570
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 2 cut(s) 272, 473
Tsp45I GTSAC 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 2 cut(s) 92, 306
XceI RCATGY 1 cut(s) 227
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.