Rmu_co8309117.1_g000001

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8309117.1
Physical Location & Seq
Forward (+)
1 .. 642
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8309117.1_g000001.1.cds

Sequence Viewer

Length: 371 bp
attggctgtatgtttatccagaaggatttcgagaactattgctttacacgaaggaaaagtacaataatccacttatttacatcactgaaaatggaagggatgagcacaatgatcccaaattatcacttgaggaagccctagccgatactcaccgaatcgacttttactatcgacatctttattatcttcatgaagcgatcaaggatggcgttaacgtgaagggatattttgcttggtctttgtttgacaacttcgaatggaatatgggttacagtgttaggtttggcatcaactatgtggattacaatgatgggctcaaaagatatcctaaactctcagcacactggttcaagaattttcttgaaaattag

Protein Analysis

122

Amino Acids

14.91

Weight (kDa)

5.69

Isoelectric Point (pI)

10.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 354
AfaI GTAC 1 cut(s) 61
AgsI TTSAA 2 cut(s) 351, 364
Alw21I GWGCWC 1 cut(s) 107
AlwI GGATC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 142
AsuII TTCGAA 1 cut(s) 254
BanII GRGCYC 1 cut(s) 317
BarI GAAGNNNNNNTAC 2 cut(s) 43, 75
Bbv12I GWGCWC 1 cut(s) 107
BccI CCATC 2 cut(s) 199, 304
BfaI CTAG 1 cut(s) 139
BmsI GCATC 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 349
BseGI GGATG 2 cut(s) 105, 210
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 107
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 107, 317
Bsp143I GATC 2 cut(s) 111, 197
BspCNI CTCAG 1 cut(s) 349
BspHI TCATGA 1 cut(s) 189
BspPI GGATC 1 cut(s) 106
BspT104I TTCGAA 1 cut(s) 254
BsrI ACTGG 1 cut(s) 349
BssMI GATC 2 cut(s) 111, 197
Bst4CI ACNGT 1 cut(s) 274
BstBI TTCGAA 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 105, 210
BstKTI GATC 2 cut(s) 114, 200
BstMBI GATC 2 cut(s) 111, 197
BtsCI GGATG 2 cut(s) 105, 210
BtsIMutI CAGTG 3 cut(s) 83, 279, 342
CciI TCATGA 1 cut(s) 189
Csp6I GTAC 1 cut(s) 60
CviAII CATG 1 cut(s) 190
CviJI RGCY 4 cut(s) 6, 136, 142, 315
CviKI_1 RGCY 4 cut(s) 6, 136, 142, 315
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 336
DpnI GATC 2 cut(s) 113, 199
DpnII GATC 2 cut(s) 111, 197
Eco24I GRGCYC 1 cut(s) 317
Eco32I GATATC 1 cut(s) 325
EcoRV GATATC 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 317
FaeI CATG 1 cut(s) 193
FaiI YATR 4 cut(s) 11, 191, 265, 296
FatI CATG 1 cut(s) 189
FokI GGATG 2 cut(s) 112, 217
FriOI GRGCYC 1 cut(s) 317
FspBI CTAG 1 cut(s) 139
Hin1II CATG 1 cut(s) 193
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 1 cut(s) 155
HpaI GTTAAC 1 cut(s) 213
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 213
Hpy188III TCNNGA 5 cut(s) 19, 31, 190, 351, 361
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 4 cut(s) 16, 45, 89, 213
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 215
Hsp92II CATG 1 cut(s) 193
KspAI GTTAAC 1 cut(s) 213
Kzo9I GATC 2 cut(s) 111, 197
LpnPI CCDG 2 cut(s) 32, 330
LweI GCATC 1 cut(s) 296
MaeI CTAG 1 cut(s) 139
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 268
MalI GATC 2 cut(s) 113, 199
MboI GATC 2 cut(s) 111, 197
MboII GAAGA 1 cut(s) 178
MhlI GDGCHC 2 cut(s) 107, 317
MluCI AATT 3 cut(s) 118, 354, 366
MnlI CCTC 1 cut(s) 123
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 1 cut(s) 212
NdeII GATC 2 cut(s) 111, 197
NlaIII CATG 1 cut(s) 193
NspV TTCGAA 1 cut(s) 254
PagI TCATGA 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 155
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 212
Sau3AI GATC 2 cut(s) 111, 197
SduI GDGCHC 2 cut(s) 107, 317
SetI ASST 2 cut(s) 218, 283
SfaNI GCATC 1 cut(s) 296
SfuI TTCGAA 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 3 cut(s) 118, 354, 366
SspMI CTAG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 218
TaqI TCGA 4 cut(s) 30, 158, 171, 254
TasI AATT 3 cut(s) 118, 354, 366
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 3 cut(s) 90, 279, 349
TspDTI ATGAA 2 cut(s) 178, 206
TspRI CASTG 3 cut(s) 90, 279, 349
XapI RAATTY 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.