RLG00000036732

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
83844939 .. 83846752
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036732

Sequence Viewer

Length: 480 bp
ATGTATGCACCGGGAAGGTGTTCCGCGTGGCAGCTGCTAAATTGCACCGGCGGGGATTCGGGTACTGAACCATATATCATGGCACACCACATACTTCTTGTTCATGCAGCTGCTGTAAAGTTGTACAAGCGAAAAATATCAGGTCATAGCCAGGCATCTCAAAAAGGAGTTATAGGTATAACCCTAGTGTGTGACTGGTTTATTCCAATTTCAGAATCAAAGCAGAACAAAGATGCAGCCTTACGATCTTTGGATTTTGTGTTTGGATGCTATGCACCTAAGGACAATTCTACAAATGCAAGCTACTTGACAGACGCTCGTGTTACTCACTCAACTGAGCTTAGTGGGGTTCCCTTTGGTCCACAGGCTGCATCGTCTTGGTTATTTGTTTATCCAAGAGGAATTAGAGATATTTTGCTCTACATAGAGAAAAAGGATGGTGTGAAAGTGCAAGGCCATGGTCATGCTAGACAACTTTGA

Protein Analysis

160

Amino Acids

17.43

Weight (kDa)

9.08

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 18 - 92 6.4e-09 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 24, 51
AfaI GTAC 2 cut(s) 64, 125
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 4 cut(s) 34, 110, 303, 340
AluI AGCT 4 cut(s) 34, 110, 303, 340
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 6 cut(s) 31, 34, 107, 110, 236, 368
Asp700I GAANNNNTTC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 359
AsuC2I CCSGG 1 cut(s) 12
AvaII GGWCC 1 cut(s) 359
AxyI CCTNAGG 1 cut(s) 279
BauI CACGAG 1 cut(s) 318
BbvI GCAGC 6 cut(s) 21, 43, 97, 119, 248, 355
BccI CCATC 1 cut(s) 431
BciT130I CCWGG 1 cut(s) 152
BcnI CCSGG 1 cut(s) 12
BfaI CTAG 2 cut(s) 185, 468
BisI GCNGC 6 cut(s) 32, 35, 108, 111, 237, 369
BlsI GCNGC 6 cut(s) 33, 36, 109, 112, 238, 370
Bme1390I CCNGG 2 cut(s) 12, 152
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 2 cut(s) 12, 152
BmsI GCATC 4 cut(s) 164, 223, 257, 380
BpuMI CCSGG 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 457
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 200
Bse21I CCTNAGG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 2 cut(s) 272, 442
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 200
BseXI GCAGC 6 cut(s) 21, 43, 97, 119, 248, 355
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 456
BsiSI CCGG 2 cut(s) 11, 48
BsnI GGCC 1 cut(s) 456
Bsp1407I TGTACA 1 cut(s) 123
Bsp143I GATC 1 cut(s) 245
Bsp19I CCATGG 1 cut(s) 457
BspACI CCGC 2 cut(s) 24, 51
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 47
BsrGI TGTACA 1 cut(s) 123
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 1 cut(s) 245
BssSI CACGAG 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 457
Bst2BI CACGAG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 279, 336, 341
BstDSI CCRYGG 1 cut(s) 457
BstF5I GGATG 2 cut(s) 272, 442
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 1 cut(s) 248
BstMBI GATC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 10, 150
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 6 cut(s) 21, 43, 97, 119, 248, 355
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 1 cut(s) 456
BtgI CCRYGG 1 cut(s) 457
BtsCI GGATG 2 cut(s) 272, 442
Cac8I GCNNGC 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 359
CseI GACGC 1 cut(s) 323
Csp6I GTAC 2 cut(s) 63, 124
CviAII CATG 4 cut(s) 79, 104, 458, 464
CviJI RGCY 8 cut(s) 34, 110, 150, 239, 303, 340, 368, 456
CviKI_1 RGCY 8 cut(s) 34, 110, 150, 239, 303, 340, 368, 456
CviQI GTAC 2 cut(s) 63, 124
DdeI CTNAG 3 cut(s) 279, 336, 341
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 359
Eco81I CCTNAGG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 4 cut(s) 82, 107, 461, 467
FatI CATG 4 cut(s) 78, 103, 457, 463
FauI CCCGC 1 cut(s) 44
Fnu4HI GCNGC 6 cut(s) 32, 35, 108, 111, 237, 369
FokI GGATG 2 cut(s) 279, 449
Fsp4HI GCNGC 6 cut(s) 32, 35, 108, 111, 237, 369
FspBI CTAG 2 cut(s) 185, 468
GluI GCNGC 6 cut(s) 32, 35, 108, 111, 237, 369
HaeIII GGCC 1 cut(s) 456
HapII CCGG 2 cut(s) 11, 48
HgaI GACGC 1 cut(s) 323
Hin1II CATG 4 cut(s) 82, 107, 461, 467
HinfI GANTC 2 cut(s) 56, 215
HpaII CCGG 2 cut(s) 11, 48
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 362
HpyAV CCTTC 1 cut(s) 9
HpyCH4V TGCA 8 cut(s) 8, 45, 107, 236, 275, 299, 371, 451
HpyF3I CTNAG 3 cut(s) 279, 336, 341
Hsp92II CATG 4 cut(s) 82, 107, 461, 467
Kzo9I GATC 1 cut(s) 245
LpnPI CCDG 7 cut(s) 24, 61, 126, 137, 164, 181, 350
Lsp1109I GCAGC 6 cut(s) 21, 43, 97, 119, 248, 355
LweI GCATC 4 cut(s) 164, 223, 257, 380
MaeI CTAG 2 cut(s) 185, 468
MaeIII GTNAC 2 cut(s) 191, 322
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MluCI AATT 4 cut(s) 40, 207, 286, 402
MnlI CCTC 1 cut(s) 392
MroXI GAANNNNTTC 1 cut(s) 19
MslI CAYNNNNRTG 1 cut(s) 462
MspA1I CMGCKG 2 cut(s) 34, 110
MspI CCGG 2 cut(s) 11, 48
MspR9I CCNGG 2 cut(s) 12, 152
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 26
NciI CCSGG 1 cut(s) 12
NcoI CCATGG 1 cut(s) 457
NdeII GATC 1 cut(s) 245
NlaIII CATG 4 cut(s) 82, 107, 461, 467
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 19
PfeI GAWTC 2 cut(s) 56, 215
PkrI GCNGC 6 cut(s) 33, 36, 109, 112, 238, 370
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 351
PspPI GGNCC 1 cut(s) 359
PstNI CAGNNNCTG 1 cut(s) 113
PvuII CAGCTG 2 cut(s) 34, 110
RsaI GTAC 2 cut(s) 64, 125
RsaNI GTAC 2 cut(s) 63, 124
RseI CAYNNNNRTG 1 cut(s) 462
SatI GCNGC 6 cut(s) 32, 35, 108, 111, 237, 369
Sau3AI GATC 1 cut(s) 245
Sau96I GGNCC 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 12, 152
SetI ASST 8 cut(s) 20, 36, 112, 145, 178, 280, 305, 342
SfaNI GCATC 4 cut(s) 164, 223, 257, 380
SgrAI CRCCGGYG 1 cut(s) 47
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 462
Sse9I AATT 4 cut(s) 40, 207, 286, 402
SsiI CCGC 2 cut(s) 24, 51
SspMI CTAG 2 cut(s) 185, 468
StyD4I CCNGG 2 cut(s) 10, 150
StyI CCWWGG 1 cut(s) 457
TasI AATT 4 cut(s) 40, 207, 286, 402
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 2 cut(s) 56, 215
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 6 cut(s) 31, 34, 107, 110, 236, 368
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 2 cut(s) 185, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.