MD03G1069600.v1.1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
5691191 .. 5692910
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1069600.v1.1.491

Sequence Viewer

Length: 834 bp
ATGGCAATGAGGTTACTGTCACTGCTGTTGGGTGTGCTACTACTAACTGGCTTTGCAGCGGCAGATAGTAAAACTATTGCTATTATACCTAGTCGTTATAACAGTGCTTCCCTGAACAGAAGCAGTTTTCCATCAGGCTTTGTATTTGGTTCAGCTTCAGCATCGTACCAATATGAAGGTGCATGGAATGAAGGTGGTAAAGGACCAAGCATATGGGATAACTTCACCCACCAGTATCCAGAAAAAATCATTGATGGAAGCACTAGGGACGTGGCTGATGATCAATACCACCGCTATAAGGAAGATGTAAAGATTTTGAAGGTTATGGGATTGGATGCTTATAGGTTCTCTATCTCATGGTCTAGATTGTTACCAAATGGAAAGCTAAGTGGGGGTGTGAACAAGGAAGGAGTACAATACTACAACAATCTCCTCAATGAACTCCTAAACAAAGGTGTAACGCCATATGCGACAATCTTTCATTGGGATCTTCCTCAAGCTTTAGAAGAAGAATATGGTGGTTTCTTAAACCGTCAAATTGTCAATCATTTTCGAGACGACGCAGAACTTTGCTTTAAGTTATTTGGCGATCGGGTAAAGCATTGGATCACACTAAATGAGCCATATACTTTTATTACTTTTGGCTATGCATCAGGAGAATTAGCACCCGGGCGATGTTCTGCTTGGCAGAACTTAAACTGCACCGGCGGTGATTCGGCTACCGAACCCTATATAGTAGCACACCACTTCCTCCTCGCTCATGCACATGCTGTTAAAGTGTACAAGACTAAATATCAAGTCATATTAATACTCAATGTTGTAATATTAAATTAA

Protein Analysis

278

Amino Acids

31.1

Weight (kDa)

6.75

Isoelectric Point (pI)

24.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 41 - 267 7.4e-89 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AciI CCGC 3 cut(s) 59, 292, 708
AclWI GGATC 2 cut(s) 495, 614
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 3 cut(s) 167, 414, 782
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 319
AjiI CACGTC 1 cut(s) 271
AluBI AGCT 3 cut(s) 155, 385, 500
AluI AGCT 3 cut(s) 155, 385, 500
Alw26I GTCTC 1 cut(s) 549
AlwI GGATC 2 cut(s) 495, 614
Ama87I CYCGRG 1 cut(s) 668
ApeKI GCWGC 1 cut(s) 56
AseI ATTAAT 1 cut(s) 806
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 2 cut(s) 669, 670
AsuHPI GGTGA 2 cut(s) 217, 722
AvaI CYCGRG 1 cut(s) 668
AvaII GGWCC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 68
BccI CCATC 2 cut(s) 139, 248
BciVI GTATCC 1 cut(s) 246
BclI TGATCA 1 cut(s) 280
BcnI CCSGG 2 cut(s) 669, 670
BcoDI GTCTC 1 cut(s) 549
BfaI CTAG 3 cut(s) 90, 264, 363
BfuI GTATCC 1 cut(s) 246
BisI GCNGC 2 cut(s) 57, 60
BlsI GCNGC 2 cut(s) 58, 61
Bme1390I CCNGG 2 cut(s) 669, 670
Bme18I GGWCC 1 cut(s) 203
BmeT110I CYCGRG 1 cut(s) 668
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 203
BmrFI CCNGG 2 cut(s) 669, 670
BmsI GCATC 3 cut(s) 170, 325, 659
BpuEI CTTGAG 1 cut(s) 480
BpuMI CCSGG 2 cut(s) 669, 670
BsaJI CCNNGG 1 cut(s) 668
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse118I RCCGGY 1 cut(s) 704
Bse1I ACTGG 2 cut(s) 52, 232
Bse3DI GCAATG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 668
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 1 cut(s) 12
BseNI ACTGG 2 cut(s) 52, 232
BseRI GAGGAG 2 cut(s) 422, 743
BseXI GCAGC 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 685
Bsh1285I CGRYCG 1 cut(s) 592
BsiEI CGRYCG 1 cut(s) 592
BsiHKCI CYCGRG 1 cut(s) 668
BsiSI CCGG 2 cut(s) 669, 705
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 549
BsmBI CGTCTC 1 cut(s) 549
BsmFI GGGAC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 668
Bsp1407I TGTACA 1 cut(s) 780
Bsp143I GATC 4 cut(s) 280, 487, 589, 606
BspACI CCGC 3 cut(s) 59, 292, 708
BspPI GGATC 2 cut(s) 495, 614
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 704
BsrGI TGTACA 1 cut(s) 780
BsrI ACTGG 2 cut(s) 52, 232
BssAI RCCGGY 1 cut(s) 704
BssECI CCNNGG 1 cut(s) 668
BssMI GATC 4 cut(s) 280, 487, 589, 606
Bst4CI ACNGT 3 cut(s) 18, 104, 533
BstAUI TGTACA 1 cut(s) 780
BstDEI CTNAG 1 cut(s) 386
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 4 cut(s) 283, 490, 592, 609
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 4 cut(s) 280, 487, 589, 606
BstMCI CGRYCG 1 cut(s) 592
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 2 cut(s) 667, 668
BstV1I GCAGC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 487
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 487
BsuI GTATCC 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 688
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 340
BtsI GCAGTG 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 20, 109
Cfr10I RCCGGY 1 cut(s) 704
Cfr13I GGNCC 1 cut(s) 203
Cfr9I CCCGGG 1 cut(s) 668
CseI GACGC 1 cut(s) 569
Csp6I GTAC 3 cut(s) 166, 413, 781
CviAII CATG 4 cut(s) 183, 357, 761, 767
CviJI RGCY 9 cut(s) 51, 138, 155, 275, 385, 500, 622, 645, 719
CviKI_1 RGCY 9 cut(s) 51, 138, 155, 275, 385, 500, 622, 645, 719
CviQI GTAC 3 cut(s) 166, 413, 781
DdeI CTNAG 1 cut(s) 386
DpnI GATC 4 cut(s) 282, 489, 591, 608
DpnII GATC 4 cut(s) 280, 487, 589, 606
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 668
EcoT22I ATGCAT 1 cut(s) 652
Esp3I CGTCTC 1 cut(s) 549
FaeI CATG 4 cut(s) 186, 360, 764, 770
FaqI GGGAC 1 cut(s) 281
FatI CATG 4 cut(s) 182, 356, 760, 766
FauNDI CATATG 2 cut(s) 212, 466
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 57, 60
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 2 cut(s) 57, 60
FspBI CTAG 3 cut(s) 90, 264, 363
GluI GCNGC 2 cut(s) 57, 60
HapII CCGG 2 cut(s) 669, 705
HgaI GACGC 1 cut(s) 569
Hin1II CATG 4 cut(s) 186, 360, 764, 770
HindIII AAGCTT 1 cut(s) 498
HinfI GANTC 1 cut(s) 713
HpaII CCGG 2 cut(s) 669, 705
HphI GGTGA 2 cut(s) 217, 722
Hpy166II GTNNAC 2 cut(s) 400, 781
Hpy188III TCNNGA 4 cut(s) 239, 363, 554, 654
Hpy8I GTNNAC 2 cut(s) 400, 781
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 4 cut(s) 170, 185, 313, 401
HpyCH4III ACNGT 3 cut(s) 18, 104, 533
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 5 cut(s) 56, 182, 650, 702, 764
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 4 cut(s) 186, 360, 764, 770
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 4 cut(s) 280, 487, 589, 606
LpnPI CCDG 8 cut(s) 33, 120, 125, 245, 252, 639, 682, 718
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 3 cut(s) 170, 325, 659
MaeI CTAG 3 cut(s) 90, 264, 363
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 4 cut(s) 12, 18, 369, 457
MalI GATC 4 cut(s) 282, 489, 591, 608
MboI GATC 4 cut(s) 280, 487, 589, 606
MboII GAAGA 4 cut(s) 314, 482, 518, 521
MflI RGATCY 1 cut(s) 487
MluCI AATT 3 cut(s) 537, 659, 829
MnlI CCTC 5 cut(s) 3, 443, 504, 761, 764
Mph1103I ATGCAT 1 cut(s) 652
MseI TTAA 7 cut(s) 527, 576, 695, 774, 806, 827, 832
MslI CAYNNNNRTG 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 2 cut(s) 669, 705
MspR9I CCNGG 2 cut(s) 669, 670
NciI CCSGG 2 cut(s) 669, 670
NdeI CATATG 2 cut(s) 212, 466
NdeII GATC 4 cut(s) 280, 487, 589, 606
NlaIII CATG 4 cut(s) 186, 360, 764, 770
NmuCI GTSAC 1 cut(s) 18
NsiI ATGCAT 1 cut(s) 652
NspI RCATGY 1 cut(s) 770
PcsI WCGNNNNNNNCGW 1 cut(s) 467
PfeI GAWTC 1 cut(s) 713
PkrI GCNGC 2 cut(s) 58, 61
Ple19I CGATCG 1 cut(s) 592
PshBI ATTAAT 1 cut(s) 806
PsiI TTATAA 1 cut(s) 99
PspPI GGNCC 1 cut(s) 203
PsuI RGATCY 1 cut(s) 487
PvuI CGATCG 1 cut(s) 592
RsaI GTAC 3 cut(s) 167, 414, 782
RsaNI GTAC 3 cut(s) 166, 413, 781
RseI CAYNNNNRTG 1 cut(s) 765
SaqAI TTAA 7 cut(s) 527, 576, 695, 774, 806, 827, 832
SatI GCNGC 2 cut(s) 57, 60
Sau3AI GATC 4 cut(s) 280, 487, 589, 606
Sau96I GGNCC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 669, 670
SfaNI GCATC 3 cut(s) 170, 325, 659
SgrAI CRCCGGYG 1 cut(s) 704
SinI GGWCC 1 cut(s) 203
SmaI CCCGGG 1 cut(s) 670
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 1 cut(s) 495
SmoI CTYRAG 1 cut(s) 495
Sse9I AATT 3 cut(s) 537, 659, 829
SsiI CCGC 3 cut(s) 59, 292, 708
SspI AATATT 1 cut(s) 825
SspMI CTAG 3 cut(s) 90, 264, 363
StyD4I CCNGG 2 cut(s) 667, 668
TaaI ACNGT 3 cut(s) 18, 104, 533
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 553
TasI AATT 3 cut(s) 537, 659, 829
TatI WGTACW 2 cut(s) 412, 780
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 713
Tru1I TTAA 7 cut(s) 527, 576, 695, 774, 806, 827, 832
Tru9I TTAA 7 cut(s) 527, 576, 695, 774, 806, 827, 832
TscAI CASTG 2 cut(s) 27, 109
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 4 cut(s) 189, 204, 453, 470
TspMI CCCGGG 1 cut(s) 668
TspRI CASTG 2 cut(s) 27, 109
VpaK11BI GGWCC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 806
XbaI TCTAGA 1 cut(s) 362
XceI RCATGY 1 cut(s) 770
XmaI CCCGGG 1 cut(s) 668
XspI CTAG 3 cut(s) 90, 264, 363
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.