Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000117

Physical Location & Seq

Genomic Coordinates Reverse (-)

63088178 .. 63089272

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0458000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACTCTGGGCTTTGAATGTTGTTTTCTGGTGTTGAAATTTTATCGCGGTGAGTTCGAACAAGGCAAAAGTGTGTTGTTTACTTTGAGTTGCAGGCGCATCGAAAGCAAGGCTCCTGTCTTTGACTCCAGGTGCTATAAGGAAGACACGCATAGACTATTGCTGACATCGAGAGTACAGAACAACGACAACAGCTGCAGTGTCATAAATTGTCGAAAGTTCCAGAGCCTTGATTCCGAAGGGGGTAATTATATGTGGTGTTTAAGTGAAGTTGACAGAGTTCCTGTTATCATTTTTCTGTTGAATCACGACCCTATATGGAAGCAAGGTCTGGATGGTGATCCACAAAGGGCCCTCTGTCAGTTCCGGTTTATTAAACTGCTGAAACTTGAGGATGATATCGGCACCCTAAGGCTCGCCGTTTCAAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0004565 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0015925 GO:0015926 GO:0016143 GO:0016145 GO:0016787 GO:0016798 GO:0019137 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0033907 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0047701 GO:0050896 GO:0071704 GO:0080083 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00380 ko00460 ko00500 ko00940 ko01100 ko01110 map00380 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

144

Amino Acids

16.73

Weight (kDa)

8.12

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca	FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica	MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica	Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis	pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis	RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata	RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora	Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa	Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha	Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana	Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccII	CGCG	1 cut(s)	48
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	38
AfaI	GTAC	1 cut(s)	177
AgsI	TTSAA	4 cut(s)	17, 37, 304, 426
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
AlwI	GGATC	1 cut(s)	335
AoxI	GGCC	1 cut(s)	351
ApaI	GGGCCC	1 cut(s)	355
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	351, 352
AsuHPI	GGTGA	2 cut(s)	62, 350
AsuII	TTCGAA	1 cut(s)	57
AxyI	CCTNAGG	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	355
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	404
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	130
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	351, 352
BmiI	GGNNCC	3 cut(s)	114, 353, 406
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	112
Bpu14I	TTCGAA	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	339
BsaWI	WCCGGW	1 cut(s)	366
Bse21I	CCTNAGG	1 cut(s)	410
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	130
BseGI	GGATG	2 cut(s)	340, 400
BseJI	GATNNNNATC	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	353
BshNI	GGYRCC	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	367
BsnI	GGCC	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	57
Bsp120I	GGGCCC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	353
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	3 cut(s)	114, 353, 406
BspMAI	CTGCAG	1 cut(s)	200
BspPI	GGATC	1 cut(s)	335
BspT104I	TTCGAA	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	404
BssMI	GATC	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	130
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	95, 417
BstDEI	CTNAG	1 cut(s)	410
BstF5I	GGATG	2 cut(s)	340, 400
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	355
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	410
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	340, 400
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	95, 417
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	351, 352
Csp6I	GTAC	1 cut(s)	176
CviJI	RGCY	6 cut(s)	12, 113, 195, 228, 353, 415
CviKI_1	RGCY	6 cut(s)	12, 113, 195, 228, 353, 415
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	355
Eco32I	GATATC	1 cut(s)	400
Eco81I	CCTNAGG	1 cut(s)	410
EcoO109I	RGGNCCY	2 cut(s)	351, 352
EcoRII	CCWGG	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	355
FaiI	YATR	7 cut(s)	138, 153, 206, 252, 254, 317, 319
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	2 cut(s)	347, 407
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	1 cut(s)	196
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	196
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	367
HhaI	GCGC	1 cut(s)	99
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	4 cut(s)	4, 125, 233, 304
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	2 cut(s)	62, 350
Hpy166II	GTNNAC	2 cut(s)	81, 274
Hpy188I	TCNGA	2 cut(s)	238, 434
Hpy188III	TCNNGA	4 cut(s)	171, 223, 308, 332
Hpy8I	GTNNAC	2 cut(s)	81, 274
HpyAV	CCTTC	1 cut(s)	233
HpyCH4V	TGCA	2 cut(s)	93, 198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	410
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	9 cut(s)	14, 79, 115, 129, 142, 236, 297, 317, 380
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	108
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	3 cut(s)	38, 208, 247
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	365, 385
MseI	TTAA	2 cut(s)	263, 375
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	105
NdeII	GATC	1 cut(s)	340
NlaIV	GGNNCC	3 cut(s)	114, 353, 406
NspV	TTCGAA	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	233, 304
PkrI	GCNGC	1 cut(s)	197
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	3 cut(s)	114, 353, 406
PspOMI	GGGCCC	1 cut(s)	351
PspPI	GGNCC	2 cut(s)	351, 352
PstI	CTGCAG	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	195
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	263, 375
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	2 cut(s)	351, 352
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	3 cut(s)	134, 197, 331
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	3 cut(s)	38, 208, 247
SsiI	CCGC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	128
TaqI	TCGA	4 cut(s)	57, 102, 170, 214
TasI	AATT	3 cut(s)	38, 208, 247
TatI	WGTACW	1 cut(s)	175
TfiI	GAWTC	2 cut(s)	233, 304
Tru1I	TTAA	2 cut(s)	263, 375
Tru9I	TTAA	2 cut(s)	263, 375
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	195
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.