Rh5AG468800

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
80430095 .. 80434272
4178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG468800.1

Sequence Viewer

Length: 1035 bp
ATGCAAGATGGAAAGCTAACTGGGGGCGTGAACAAGGAAGGAGTCAAATACTACAACAATCTCATCAATGAACTCTTACGCAATGGTCTAAAGCCATTTGTAACCCTCTTCCACTGGGATCTTCCCCAGACTTTAGAAGATGAATATGGCGAGCTTTGTTACAAGGAATTTGGTGATAGGGTAAAGCACTGGATCACTTTTAATGAGCCATATAGTTATAGTGCTGGTGGTTATGCAGTGGCAATTTTGGCACCAGGACGCTGTTCTGATTGGCAGGAACTAAATTGCACCGGTGGGAATTCGGGTACTGAACCATACTTGGTGGCACACAACCAGCTCCTTGCTCATACAGCTGCAATAACATTATACAAGCAGCAATATCAGTCATCTCAAAAGGGATTGATAGGGATTACTCTAGTGTCAAACTGGTTTGAGCCGGTTTCTGAGGCAGAGCACCATAAAAATGCTGCACTAAGAGCTCTAGATTATATGTTTGGATGGTTTATGGACCCCTTGACAAATGATGTGCTTAATGGAATTCCCATTGGACCAAAGGCTGCTTCAGATTGGCTATACGTTTATCCCAGAGGAATTCGAGATCTTTTGCCCTACACGAAGACAAAGTATAATGATCCACTCATATACGTTACTGAGAATGGTATTGATGAGTTCAATGATCCCAAATTAACACTCGAAGTATCCCTTAACGACACCCAGAGAGTTGACTACTACTATCGCCACCTCTATTGCCTTCAAAGAGCAATCAAGGATGGTGTGAATGTTAAGGGATACTTTGCATGGTCATTGCTAGACAACTTTGAATGGAATTCTGGTTACACTGTCCGATTTGGTATCAACTATGTAGATTACAAAAATGGGCAGAATAGGCACCCAAAACTTTCTGCACACTGGTTCAAACGTTTCCTCAAAAAAAGCTTGGAGGGCAACAGAGCTGACGAGGTCCAGAGTTTGATGAAGAGTGTTATCAAAAGACCAAAAGCAGAAGAATATTGCAGCATGCACATCGAAGTCTAA

Protein Analysis

344

Amino Acids

39.68

Weight (kDa)

6.37

Isoelectric Point (pI)

27.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 7 - 172 1.1e-40 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 182 - 311 6.5e-39 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 250, 888
AclI AACGTT 1 cut(s) 919
AclWI GGATC 4 cut(s) 126, 200, 626, 671
AcsI RAATTY 5 cut(s) 167, 298, 537, 591, 826
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 1 cut(s) 307
AgeI ACCGGT 1 cut(s) 290
AgsI TTSAA 4 cut(s) 673, 755, 821, 916
AjnI CCWGG 1 cut(s) 253
AjuI GAANNNNNNNTTGG 2 cut(s) 544, 576
AluBI AGCT 7 cut(s) 16, 154, 337, 353, 479, 936, 953
AluI AGCT 7 cut(s) 16, 154, 337, 353, 479, 936, 953
Alw21I GWGCWC 2 cut(s) 456, 481
AlwI GGATC 4 cut(s) 126, 200, 626, 671
ApeKI GCWGC 5 cut(s) 353, 373, 467, 557, 1014
ApoI RAATTY 5 cut(s) 167, 298, 537, 591, 826
AsiGI ACCGGT 1 cut(s) 290
AspS9I GGNCC 3 cut(s) 508, 548, 961
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 3 cut(s) 508, 548, 961
BanI GGYRCC 2 cut(s) 250, 888
BanII GRGCYC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 623
Bbv12I GWGCWC 2 cut(s) 456, 481
BbvI GCAGC 5 cut(s) 340, 385, 454, 544, 1026
BccI CCATC 3 cut(s) 2, 492, 764
BcgI CGANNNNNNTGC 1 cut(s) 1006
BciT130I CCWGG 1 cut(s) 255
BciVI GTATCC 2 cut(s) 709, 782
BfaI CTAG 3 cut(s) 416, 482, 809
BfuI GTATCC 2 cut(s) 709, 782
BglII AGATCT 1 cut(s) 598
BisI GCNGC 5 cut(s) 354, 374, 468, 558, 1015
BlsI GCNGC 5 cut(s) 355, 375, 469, 559, 1016
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 3 cut(s) 508, 548, 961
BmgT120I GGNCC 3 cut(s) 508, 548, 961
BmiI GGNNCC 3 cut(s) 252, 510, 890
BmrFI CCNGG 1 cut(s) 255
BmrI ACTGGG 2 cut(s) 30, 124
BmuI ACTGGG 2 cut(s) 30, 124
BpiI GAAGAC 1 cut(s) 623
BsaWI WCCGGW 1 cut(s) 290
Bse118I RCCGGY 2 cut(s) 290, 436
Bse1I ACTGG 5 cut(s) 25, 119, 194, 431, 914
Bse3DI GCAATG 2 cut(s) 88, 803
BseBI CCWGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 503, 775
BseMI GCAATG 2 cut(s) 88, 803
BseMII CTCAG 2 cut(s) 435, 642
BseNI ACTGG 5 cut(s) 25, 119, 194, 431, 914
BseXI GCAGC 5 cut(s) 340, 385, 454, 544, 1026
BsgI GTGCAG 2 cut(s) 453, 888
BshNI GGYRCC 2 cut(s) 250, 888
BshTI ACCGGT 1 cut(s) 290
BsiHKAI GWGCWC 2 cut(s) 456, 481
BsiSI CCGG 2 cut(s) 291, 437
Bsp1286I GDGCHC 2 cut(s) 456, 481
Bsp143I GATC 5 cut(s) 118, 192, 598, 631, 676
BspCNI CTCAG 2 cut(s) 436, 643
BspLI GGNNCC 3 cut(s) 252, 510, 890
BspPI GGATC 4 cut(s) 126, 200, 626, 671
BspT107I GGYRCC 2 cut(s) 250, 888
BsrDI GCAATG 2 cut(s) 88, 803
BsrFI RCCGGY 2 cut(s) 290, 436
BsrI ACTGG 5 cut(s) 25, 119, 194, 431, 914
BssAI RCCGGY 2 cut(s) 290, 436
BssMI GATC 5 cut(s) 118, 192, 598, 631, 676
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 841
Bst6I CTCTTC 2 cut(s) 113, 971
BstC8I GCNNGC 2 cut(s) 152, 1019
BstDEI CTNAG 3 cut(s) 444, 473, 651
BstF5I GGATG 2 cut(s) 503, 775
BstKTI GATC 5 cut(s) 121, 195, 601, 634, 679
BstMBI GATC 5 cut(s) 118, 192, 598, 631, 676
BstMWI GCNNNNNNNGC 5 cut(s) 248, 350, 476, 886, 942
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 1 cut(s) 1021
BstSCI CCNGG 1 cut(s) 253
BstV1I GCAGC 5 cut(s) 340, 385, 454, 544, 1026
BstV2I GAAGAC 1 cut(s) 623
BstX2I RGATCY 2 cut(s) 118, 598
BstYI RGATCY 2 cut(s) 118, 598
BsuI GTATCC 2 cut(s) 709, 782
BtsCI GGATG 2 cut(s) 503, 775
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 5 cut(s) 112, 187, 243, 837, 907
Cac8I GCNNGC 2 cut(s) 152, 1019
Cfr10I RCCGGY 2 cut(s) 290, 436
Cfr13I GGNCC 3 cut(s) 508, 548, 961
CseI GACGC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 306
CspAI ACCGGT 1 cut(s) 290
CspCI CAANNNNNGTGG 2 cut(s) 728, 763
CviAII CATG 2 cut(s) 798, 1018
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 3 cut(s) 444, 473, 651
DpnI GATC 5 cut(s) 120, 194, 600, 633, 678
DpnII GATC 5 cut(s) 118, 192, 598, 631, 676
Eam1104I CTCTTC 2 cut(s) 113, 971
EarI CTCTTC 2 cut(s) 113, 971
Ecl136II GAGCTC 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 481
Eco47I GGWCC 3 cut(s) 508, 548, 961
Eco53kI GAGCTC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 479
EcoRI GAATTC 4 cut(s) 298, 537, 591, 826
EcoRII CCWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 481
FaeI CATG 2 cut(s) 801, 1021
FalI AAGNNNNNCTT 4 cut(s) 687, 719, 776, 808
FatI CATG 2 cut(s) 797, 1017
Fnu4HI GCNGC 5 cut(s) 354, 374, 468, 558, 1015
FokI GGATG 2 cut(s) 510, 782
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 5 cut(s) 354, 374, 468, 558, 1015
FspBI CTAG 3 cut(s) 416, 482, 809
GluI GCNGC 5 cut(s) 354, 374, 468, 558, 1015
HapII CCGG 2 cut(s) 291, 437
HgaI GACGC 1 cut(s) 267
Hin1II CATG 2 cut(s) 801, 1021
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HindIII AAGCTT 1 cut(s) 934
HinfI GANTC 1 cut(s) 42
HpaII CCGG 2 cut(s) 291, 437
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 31, 724
Hpy188I TCNGA 4 cut(s) 268, 445, 565, 845
Hpy188III TCNNGA 3 cut(s) 482, 596, 964
Hpy8I GTNNAC 2 cut(s) 31, 724
HpyAV CCTTC 2 cut(s) 32, 761
HpyCH4III ACNGT 1 cut(s) 841
HpyCH4IV ACGT 3 cut(s) 576, 645, 919
HpyCH4V TGCA 9 cut(s) 4, 236, 288, 356, 470, 797, 905, 1014, 1021
HpyF10VI GCNNNNNNNGC 5 cut(s) 248, 350, 476, 886, 942
HpyF3I CTNAG 3 cut(s) 444, 473, 651
HpySE526I ACGT 3 cut(s) 576, 645, 919
Hsp92II CATG 2 cut(s) 801, 1021
Kzo9I GATC 5 cut(s) 118, 192, 598, 631, 676
LmnI GCTCC 1 cut(s) 342
Lsp1109I GCAGC 5 cut(s) 340, 385, 454, 544, 1026
MaeI CTAG 3 cut(s) 416, 482, 809
MaeII ACGT 3 cut(s) 576, 645, 919
MaeIII GTNAC 4 cut(s) 100, 158, 646, 833
MalI GATC 5 cut(s) 120, 194, 600, 633, 678
MboI GATC 5 cut(s) 118, 192, 598, 631, 676
MboII GAAGA 6 cut(s) 100, 113, 149, 628, 988, 1016
MflI RGATCY 2 cut(s) 118, 598
MhlI GDGCHC 2 cut(s) 456, 481
MluCI AATT 8 cut(s) 167, 243, 283, 298, 537, 591, 683, 826
MlyI GAGTC 1 cut(s) 51
MnlI CCTC 7 cut(s) 116, 439, 581, 752, 934, 935, 952
MseI TTAA 5 cut(s) 201, 531, 686, 705, 783
MslI CAYNNNNRTG 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 2 cut(s) 291, 437
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 5 cut(s) 248, 350, 476, 886, 942
NdeII GATC 5 cut(s) 118, 192, 598, 631, 676
NlaIII CATG 2 cut(s) 801, 1021
NlaIV GGNNCC 3 cut(s) 252, 510, 890
NspI RCATGY 1 cut(s) 1021
PaeI GCATGC 1 cut(s) 1021
PflFI GACNNNGTC 1 cut(s) 959
PinAI ACCGGT 1 cut(s) 290
PkrI GCNGC 5 cut(s) 355, 375, 469, 559, 1016
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 481
Psp1406I AACGTT 1 cut(s) 919
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 3 cut(s) 252, 510, 890
PspPI GGNCC 3 cut(s) 508, 548, 961
PsuI RGATCY 2 cut(s) 118, 598
PsyI GACNNNGTC 1 cut(s) 959
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
RseI CAYNNNNRTG 1 cut(s) 462
SacI GAGCTC 1 cut(s) 481
SaqAI TTAA 5 cut(s) 201, 531, 686, 705, 783
SatI GCNGC 5 cut(s) 354, 374, 468, 558, 1015
Sau3AI GATC 5 cut(s) 118, 192, 598, 631, 676
Sau96I GGNCC 3 cut(s) 508, 548, 961
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 2 cut(s) 456, 481
SgrAI CRCCGGYG 1 cut(s) 290
SinI GGWCC 3 cut(s) 508, 548, 961
SmiMI CAYNNNNRTG 1 cut(s) 462
SphI GCATGC 1 cut(s) 1021
Sse9I AATT 8 cut(s) 167, 243, 283, 298, 537, 591, 683, 826
SspI AATATT 1 cut(s) 1010
SspMI CTAG 3 cut(s) 416, 482, 809
SstI GAGCTC 1 cut(s) 481
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 841
TaiI ACGT 3 cut(s) 579, 648, 922
TaqI TCGA 3 cut(s) 595, 693, 1026
TasI AATT 8 cut(s) 167, 243, 283, 298, 537, 591, 683, 826
Tru1I TTAA 5 cut(s) 201, 531, 686, 705, 783
Tru9I TTAA 5 cut(s) 201, 531, 686, 705, 783
TscAI CASTG 5 cut(s) 119, 194, 243, 844, 914
TseI GCWGC 5 cut(s) 353, 373, 467, 557, 1014
TspDTI ATGAA 3 cut(s) 84, 156, 989
TspRI CASTG 5 cut(s) 119, 194, 243, 844, 914
Tth111I GACNNNGTC 1 cut(s) 959
VpaK11BI GGWCC 3 cut(s) 508, 548, 961
XapI RAATTY 5 cut(s) 167, 298, 537, 591, 826
XbaI TCTAGA 1 cut(s) 481
XceI RCATGY 1 cut(s) 1021
XspI CTAG 3 cut(s) 416, 482, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.