pycom09g16160

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
16290366 .. 16291457
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g16160.4

Sequence Viewer

Length: 471 bp
ATGATATCAATAACATTGGTGTCACATTGGTTTGTTCCGGTTTCTGAGGCAGAGCACGATAAAAACGCTGCGTTAAGATCATTGGATTTTATGTTTGGATGGTTTATGGAACCACTGACGAGTGGCGACTATCCACACAGCATGCGGTCTCTTGTTGGAAGCCGATTACCAAAGTTTACGAAAGAACAATCCAAGTTGCTAAAGGGGTCATTTGATTTTCTTGGAATAAATTACTATACCGCTTACTATGCAAGTTATGCACCTTCAAACAATTCTGTAAATGCAAGCTATTTAACAGATGCTCGCTCTAATCAATCCCCTGAGAAAAGTGGAGTCCCCATCGGTCCAAAGGCTGCTTCAGATTGGCTATATGTTTATTCAAGAGGAATTCGAGACCTTTTAGTCTACACGAAGGAGAAGTATCATGATCCACTCATTTACATTACTGAGAATGGGATGGTGTCAATGTGA

Protein Analysis

157

Amino Acids

17.69

Weight (kDa)

6.9

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47600 AT1G47600 AT1G51470 AT1G51490
fragaria_vesca FvH4_3g43490 FvH4_3g43490 FvH4_3g43490 FvH4_3g43500 FvH4_3g43501 FvH4_3g43501 FvH4_3g43502 FvH4_3g43503 FvH4_3g43504 FvH4_3g43504 FvH4_3g43504 FvH4_3g43510 FvH4_3g43520 FvH4_3g43520 FvH4_3g43520
malus_domestica MD00G1105700.v1.1 MD00G1105800.v1.1 MD00G1145200.v1.1 MD00G1145300.v1.1 MD00G1190900.v1.1 MD00G1219900.v1.1 MD03G1011300.v1.1 MD03G1021500.v1.1 MD03G1021600.v1.1 MD03G1068100.v1.1 MD03G1068200.v1.1 MD03G1069100.v1.1 MD03G1069400.v1.1 MD03G1069500.v1.1 MD03G1069600.v1.1 MD03G1098600.v1.1 MD03G1204500.v1.1 MD03G1204600.v1.1 MD03G1204700.v1.1 MD03G1204800.v1.1 MD05G1053100.v1.1 MD05G1105800.v1.1 MD05G1105900.v1.1 MD05G1106100.v1.1 MD05G1106200.v1.1 MD05G1114800.v1.1 MD05G1114900.v1.1 MD05G1121900.v1.1 MD05G1312800.v1.1 MD09G1243000.v1.1 MD09G1243300.v1.1 MD10G1124500.v1.1 MD11G1023200.v1.1 MD11G1023700.v1.1 MD11G1023900.v1.1 MD11G1024000.v1.1 MD11G1024100.v1.1 MD11G1027500.v1.1 MD11G1027700.v1.1 MD12G1211300.v1.1 MD12G1211400.v1.1 MD12G1211500.v1.1 MD15G1374300.v1.1 MD15G1441900.v1.1 MD15G1442000.v1.1 MD15G1442100.v1.1
prunus_persica Prupe.1G014500_v2.0.a1 Prupe.1G584100_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G197900_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198000_v2.0.a1 Prupe.2G198100_v2.0.a1 Prupe.2G198200_v2.0.a1 Prupe.2G198300_v2.0.a1 Prupe.2G198400_v2.0.a1 Prupe.3G110900_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.3G111000_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.4G165800_v2.0.a1 Prupe.6G018800_v2.0.a1 Prupe.6G018900_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019000_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019100_v2.0.a1 Prupe.6G019200_v2.0.a1 Prupe.6G019300_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019500_v2.0.a1 Prupe.6G019600_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019700_v2.0.a1 Prupe.6G019900_v2.0.a1 Prupe.6G020100_v2.0.a1 Prupe.6G088200_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G134900_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136100_v2.0.a1 Prupe.6G136300_v2.0.a1 Prupe.6G136400_v2.0.a1 Prupe.6G136500_v2.0.a1 Prupe.6G136700_v2.0.a1 Prupe.6G145100_v2.0.a1 Prupe.7G083600_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G083700_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105400_v2.0.a1 Prupe.7G105800_v2.0.a1 Prupe.7G106100_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.8G165700_v2.0.a1 Prupe.I005900_v2.0.a1
pyrus_communis pycom02g06130 pycom02g06140 pycom03g05540 pycom05g09690 pycom05g09730 pycom05g11590 pycom05g13130 pycom09g16130 pycom09g16140 pycom09g16150 pycom09g16160 pycom09g16190 pycom11g01890 pycom11g02100 pycom11g02130 pycom11g09390 pycom11g09400 pycom11g09490 pycom812g00010
rosa_chinensis RchiOBHm_Chr5g0071491 RchiOBHm_Chr5g0071511 RchiOBHm_Chr5g0077911 RchiOBHm_Chr5g0077951 RchiOBHm_Chr5g0077961 RchiOBHm_Chr5g0077971 RchiOBHm_Chr5g0077981 RchiOBHm_Chr5g0078001 RchiOBHm_Chr5g0078011
rosa_laevigata RLG00000036725 RLG00000036729 RLG00000036732 RLG00000036735 RLG00000036736 RLG00000036737 RLG00000036738 RLG00000036739 RLG00000036740 RLG00000036741 RLG00000036745
rosa_multiflora Rmu_co8284559.1_g000001 Rmu_co8309117.1_g000001 Rmu_sc0000177.1_g000021 Rmu_sc0001711.1_g000024 Rmu_sc0002139.1_g000001 Rmu_sc0002139.1_g000004 Rmu_sc0002139.1_g000005 Rmu_sc0004697.1_g000006 Rmu_sc0006499.1_g000016 Rmu_sc0009988.1_g000001
rosa_roxburghii Rroxscaffold_1G00000230 Rroxscaffold_1G00000260 Rroxscaffold_1G00000280 Rroxscaffold_1G00000290 Rroxscaffold_1G00004220 Rroxscaffold_1G00004280
rosa_rugosa Rorug05G0457000 Rorug05G0457100 Rorug05G0457200 Rorug05G0457300 Rorug05G0457400 Rorug05G0457500 Rorug05G0457600 Rorug05G0457700 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457800 Rorug05G0457900 Rorug05G0458000 Rorug05G0458100
rosa_samantha Rh5AG468700 Rh5AG468800 Rh5AG511700 Rh5AG512200 Rh5AG512300 Rh5AG512400 Rh5AG512700 Rh5AG512800 Rh5CG558300 Rh5CG558500 Rh5DG546000 Rh5DG546300 Rh5DG546600 Rh5DG546700 Rh5DG546900 Rh5DG547000 Rh5DG547100 Rh5DG547300 Rh6BG198200
rosa_wichuraiana Rw5G043550 Rw5G047470 Rw5G047480 Rw5G047500 Rw5G047510 Rw5G047520 Rw5G047530 Rw5G047540 Rw5G047550 Rw5G047560 Rw6G016930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 405
AciI CCGC 2 cut(s) 145, 240
AclWI GGATC 1 cut(s) 422
AcsI RAATTY 1 cut(s) 387
AcuI CTGAAG 1 cut(s) 342
AgsI TTSAA 2 cut(s) 267, 381
AjuI GAANNNNNNNTTGG 2 cut(s) 340, 372
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 153, 387
AlwI GGATC 1 cut(s) 422
ApeKI GCWGC 2 cut(s) 68, 353
ApoI RAATTY 1 cut(s) 387
AspS9I GGNCC 1 cut(s) 344
AvaII GGWCC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 55, 340
BccI CCATC 3 cut(s) 93, 347, 451
BcoDI GTCTC 2 cut(s) 153, 387
BisI GCNGC 2 cut(s) 69, 354
BlsI GCNGC 2 cut(s) 70, 355
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 1 cut(s) 111
BmsI GCATC 1 cut(s) 289
BsaI GGTCTC 2 cut(s) 153, 387
BsaWI WCCGGW 1 cut(s) 37
BseGI GGATG 2 cut(s) 104, 462
BseMII CTCAG 3 cut(s) 36, 312, 438
BseXI GCAGC 2 cut(s) 55, 340
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 320
BsmAI GTCTC 2 cut(s) 153, 387
BsmFI GGGAC 1 cut(s) 320
Bso31I GGTCTC 2 cut(s) 153, 387
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 77, 427
BspACI CCGC 2 cut(s) 145, 240
BspCNI CTCAG 3 cut(s) 37, 313, 439
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 111
BspPI GGATC 1 cut(s) 422
BspTNI GGTCTC 2 cut(s) 153, 387
BssMI GATC 2 cut(s) 77, 427
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 3 cut(s) 143, 286, 304
BstDEI CTNAG 3 cut(s) 45, 321, 447
BstF5I GGATG 2 cut(s) 104, 462
BstKTI GATC 2 cut(s) 80, 430
BstMAI GTCTC 2 cut(s) 153, 387
BstMBI GATC 2 cut(s) 77, 427
BstMWI GCNNNNNNNGC 2 cut(s) 248, 257
BstNSI RCATGY 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 55, 340
BtsCI GGATG 2 cut(s) 104, 462
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 3 cut(s) 143, 286, 304
CciI TCATGA 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 344
CviAII CATG 2 cut(s) 142, 425
CviJI RGCY 4 cut(s) 162, 288, 353, 367
CviKI_1 RGCY 4 cut(s) 162, 288, 353, 367
DdeI CTNAG 3 cut(s) 45, 321, 447
DpnI GATC 2 cut(s) 79, 429
DpnII GATC 2 cut(s) 77, 427
DrdI GACNNNNNNGTC 1 cut(s) 401
DseDI GACNNNNNNGTC 1 cut(s) 401
Eco31I GGTCTC 2 cut(s) 153, 387
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 344
Eco57I CTGAAG 1 cut(s) 342
EcoRI GAATTC 1 cut(s) 387
EcoRV GATATC 1 cut(s) 6
FaeI CATG 2 cut(s) 145, 428
FaiI YATR 9 cut(s) 92, 107, 143, 237, 249, 258, 370, 372, 426
FaqI GGGAC 1 cut(s) 320
FatI CATG 2 cut(s) 141, 424
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 69, 354
FokI GGATG 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 69, 354
GluI GCNGC 2 cut(s) 69, 354
HapII CCGG 1 cut(s) 38
Hin1II CATG 2 cut(s) 145, 428
HinfI GANTC 1 cut(s) 333
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 2 cut(s) 177, 406
Hpy188I TCNGA 2 cut(s) 46, 361
Hpy188III TCNNGA 3 cut(s) 381, 392, 425
Hpy8I GTNNAC 2 cut(s) 177, 406
HpyAV CCTTC 2 cut(s) 273, 406
HpyCH4V TGCA 3 cut(s) 251, 260, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 257
HpyF3I CTNAG 3 cut(s) 45, 321, 447
Hsp92II CATG 2 cut(s) 145, 428
Kzo9I GATC 2 cut(s) 77, 427
LpnPI CCDG 2 cut(s) 51, 333
Lsp1109I GCAGC 2 cut(s) 55, 340
LweI GCATC 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 21
MalI GATC 2 cut(s) 79, 429
MboI GATC 2 cut(s) 77, 427
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 3 cut(s) 229, 271, 387
MlyI GAGTC 1 cut(s) 342
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 2 cut(s) 40, 377
MseI TTAA 2 cut(s) 74, 293
MspI CCGG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 248, 257
NdeII GATC 2 cut(s) 77, 427
NlaIII CATG 2 cut(s) 145, 428
NlaIV GGNNCC 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 21
NspI RCATGY 1 cut(s) 145
PaeI GCATGC 1 cut(s) 145
PagI TCATGA 1 cut(s) 424
PkrI GCNGC 2 cut(s) 70, 355
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 344
SaqAI TTAA 2 cut(s) 74, 293
SatI GCNGC 2 cut(s) 69, 354
Sau3AI GATC 2 cut(s) 77, 427
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 1 cut(s) 342
SduI GDGCHC 1 cut(s) 57
SetI ASST 3 cut(s) 265, 290, 399
SfaNI GCATC 1 cut(s) 289
SinI GGWCC 1 cut(s) 344
SphI GCATGC 1 cut(s) 145
Sse9I AATT 3 cut(s) 229, 271, 387
SsiI CCGC 2 cut(s) 145, 240
TaqI TCGA 1 cut(s) 391
TaqII GACCGA 1 cut(s) 332
TasI AATT 3 cut(s) 229, 271, 387
Tru1I TTAA 2 cut(s) 74, 293
Tru9I TTAA 2 cut(s) 74, 293
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 1 cut(s) 21
TseI GCWGC 2 cut(s) 68, 353
Tsp45I GTSAC 1 cut(s) 21
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 1 cut(s) 387
XceI RCATGY 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.