Prupe.2G112700_v2.0.a1

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000466
Physical Location & Seq
Reverse (-)
17073807 .. 17075686
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G112700.1

Sequence Viewer

Length: 549 bp
ATGAGAAGCTTTAGGTACATTGAAGAAATTAAAGAACCAGTGGAGAGGGAGTGCCCTGGAGCTGTTTCTTGTTCAGCTGATCAGTCGGCTCCTCCTCAATGGAACTACGATGTGTTTTTAAGTTTCAGGGGTGTAGACACTCGAAATAGCTTTTTATCCCATTTATACCACGAATTACAGCACAGGTGCATCAAAACATTCATGGATGATCCAAAGCTTGAAAGAGGGACAACTATTTCTTCTGAGCTCTTCAAAGCAATCCAAGAATCAAGGCTTGCAATCGTTGTTCTCTCGCCAAACTATGCTTCTTCTTCCTGGTGCTTGGATGAACTTACAAATAATCTCCAATGCATGAAATCCAACGACACAGTTCTGCCTATGTTTTTTAATGTGGATCCCTCCGATGTGCGAATACAAAGTGGCATTTTTGCAGGCGCGTTCGCCGAGCATGAGAAAAGGTTTAGGGAAGATATAGAAAAGGTGAAGCGCTGGAGAGCTGCTTTAACAGAAGTTGCCAATTTATCTGGGTTCAATTCAAAAAATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

183

Amino Acids

20.92

Weight (kDa)

5.65

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AccII CGCG 1 cut(s) 437
AclWI GGATC 3 cut(s) 203, 389, 402
AfaI GTAC 1 cut(s) 17
AfeI AGCGCT 1 cut(s) 488
AgsI TTSAA 5 cut(s) 23, 221, 253, 532, 537
AjnI CCWGG 2 cut(s) 55, 314
AjuI GAANNNNNNNTTGG 2 cut(s) 289, 321
AluBI AGCT 7 cut(s) 9, 62, 77, 150, 217, 247, 497
AluI AGCT 7 cut(s) 9, 62, 77, 150, 217, 247, 497
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 3 cut(s) 203, 389, 402
Aor51HI AGCGCT 1 cut(s) 488
ApeKI GCWGC 1 cut(s) 497
AspLEI GCGC 2 cut(s) 437, 489
AsuHPI GGTGA 1 cut(s) 493
BaeGI GKGCMC 1 cut(s) 56
BamHI GGATCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 484
BciT130I CCWGG 2 cut(s) 57, 316
BclI TGATCA 1 cut(s) 79
BfoI RGCGCY 1 cut(s) 490
BisI GCNGC 1 cut(s) 498
BlsI GCNGC 1 cut(s) 499
Bme1390I CCNGG 2 cut(s) 57, 316
BmiI GGNNCC 2 cut(s) 90, 396
BmrFI CCNGG 2 cut(s) 57, 316
BmsI GCATC 1 cut(s) 198
BpmI CTGGAG 2 cut(s) 78, 511
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 2 cut(s) 57, 316
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 2 cut(s) 211, 331
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 2 cut(s) 81, 84
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 1 cut(s) 484
Bsh1236I CGCG 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 241
Bsp1286I GDGCHC 2 cut(s) 56, 249
Bsp143I GATC 3 cut(s) 79, 208, 394
BspCNI CTCAG 1 cut(s) 235
BspFNI CGCG 1 cut(s) 437
BspLI GGNNCC 2 cut(s) 90, 396
BspPI GGATC 3 cut(s) 203, 389, 402
BspQI GCTCTTC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 3 cut(s) 79, 208, 394
Bst2UI CCWGG 2 cut(s) 57, 316
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 276, 433
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 211, 331
BstFNI CGCG 1 cut(s) 437
BstH2I RGCGCY 1 cut(s) 490
BstHHI GCGC 2 cut(s) 437, 489
BstKTI GATC 3 cut(s) 82, 211, 397
BstMBI GATC 3 cut(s) 79, 208, 394
BstNI CCWGG 2 cut(s) 57, 316
BstSCI CCNGG 2 cut(s) 55, 314
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 1 cut(s) 437
BstV1I GCAGC 1 cut(s) 484
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BtsCI GGATG 2 cut(s) 211, 331
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 276, 433
CfoI GCGC 2 cut(s) 437, 489
Csp6I GTAC 1 cut(s) 16
CviAII CATG 3 cut(s) 202, 352, 449
CviJI RGCY 9 cut(s) 9, 62, 77, 89, 150, 217, 247, 274, 497
CviKI_1 RGCY 9 cut(s) 9, 62, 77, 89, 150, 217, 247, 274, 497
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 1 cut(s) 243
DpnI GATC 3 cut(s) 81, 210, 396
DpnII GATC 3 cut(s) 79, 208, 394
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco47III AGCGCT 1 cut(s) 488
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 55, 314
EcoT22I ATGCAT 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 3 cut(s) 205, 355, 452
FaiI YATR 7 cut(s) 166, 203, 303, 353, 380, 450, 473
FaqI GGGAC 1 cut(s) 241
FatI CATG 3 cut(s) 201, 351, 448
FbaI TGATCA 1 cut(s) 79
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 498
FokI GGATG 2 cut(s) 218, 338
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 498
GlaI GCGC 2 cut(s) 436, 488
GluI GCNGC 1 cut(s) 498
GsuI CTGGAG 2 cut(s) 78, 511
HaeII RGCGCY 1 cut(s) 490
HhaI GCGC 2 cut(s) 437, 489
Hin1II CATG 3 cut(s) 205, 355, 452
Hin6I GCGC 2 cut(s) 435, 487
HinP1I GCGC 2 cut(s) 435, 487
HindIII AAGCTT 2 cut(s) 7, 215
HinfI GANTC 1 cut(s) 266
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 244, 403
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 4 cut(s) 189, 278, 351, 431
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 3 cut(s) 205, 355, 452
HspAI GCGC 2 cut(s) 435, 487
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 3 cut(s) 79, 208, 394
LguI GCTCTTC 1 cut(s) 254
LmnI GCTCC 2 cut(s) 59, 94
Lsp1109I GCAGC 1 cut(s) 484
LweI GCATC 1 cut(s) 198
MalI GATC 3 cut(s) 81, 210, 396
MboI GATC 3 cut(s) 79, 208, 394
MboII GAAGA 6 cut(s) 35, 231, 241, 300, 303, 479
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 56, 249
MluCI AATT 4 cut(s) 27, 173, 517, 532
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 5 cut(s) 39, 102, 105, 218, 409
Mph1103I ATGCAT 1 cut(s) 353
MseI TTAA 4 cut(s) 30, 119, 387, 503
MspA1I CMGCKG 1 cut(s) 77
MspR9I CCNGG 2 cut(s) 57, 316
MvaI CCWGG 2 cut(s) 57, 316
MvnI CGCG 1 cut(s) 437
NdeII GATC 3 cut(s) 79, 208, 394
NlaIII CATG 3 cut(s) 205, 355, 452
NlaIV GGNNCC 2 cut(s) 90, 396
NmeAIII GCCGAG 1 cut(s) 469
NsiI ATGCAT 1 cut(s) 353
PciSI GCTCTTC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 499
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 55, 314
PspGI CCWGG 2 cut(s) 55, 314
PspN4I GGNNCC 2 cut(s) 90, 396
PsuI RGATCY 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 254
SaqAI TTAA 4 cut(s) 30, 119, 387, 503
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 3 cut(s) 79, 208, 394
ScrFI CCNGG 2 cut(s) 57, 316
SduI GDGCHC 2 cut(s) 56, 249
SfaNI GCATC 1 cut(s) 198
Sse9I AATT 4 cut(s) 27, 173, 517, 532
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 55, 314
TaaI ACNGT 1 cut(s) 370
TaqI TCGA 1 cut(s) 142
TasI AATT 4 cut(s) 27, 173, 517, 532
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 4 cut(s) 30, 119, 387, 503
Tru9I TTAA 4 cut(s) 30, 119, 387, 503
TscAI CASTG 1 cut(s) 45
TseI GCWGC 1 cut(s) 497
TspDTI ATGAA 3 cut(s) 190, 342, 368
TspRI CASTG 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.