RchiOBHm_Chr5g0080091

Belongs to the formin-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000466
Physical Location & Seq
Reverse (-)
85909424 .. 85910457
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35443

Sequence Viewer

Length: 600 bp
ATGCCAAAGTGGACCAAAGATATTGAAGCAGTTGAAGCAACAACACAAGCCACCAATGGAAACTCTGACCCAGCTCCGCAGTGGAAGTATGATGTGTTTTTGAGTTTTAGGGGAGTAGACACTCGCGTGAGTTTTCTATCCCATTTAAGCCATGAATTGGAAAACTCGGGAGAAATTAGAACATTCAAGGATGATAAACAACTTGAGATAGGGGAGGATATTTCTCAAAGTCTGCTGACGGCAATTGAAGAATCAAGGTCTGCGATCATTGTTCTGTCGAAAAACTATGCTTTTTCTGCATGGTGTTTAGATGAACTTACAAAGATCTGTCAATGCATGAAAGGCAAAAAGAGAATTTTGCCAATTTTTTTTGATGTGGATCCCTCTGTTGTACGATATCAAAAGGATACATTTGGAGTGGCCTTACAAAAGCATGCAAGGAGCGGAAGGTATGACATAGTGAAGGTGGAGCAGTGGAAAGCTGATTTAACAAAAGTGGGAAATCTCTCTGGGTGGAATTTAAAGGACTATAAAACTGAAAGGGACCTCATTGAACACATTGTGAAATTCGTGCTCAAAACAGTACGTCAAAACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
FH2 PTEN_C2

Protein Analysis

199

Amino Acids

22.85

Weight (kDa)

7.69

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 29 - 196 5.1e-47 TIR domain
TIR_2 PF13676 32 - 129 2.3e-16 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 157
AccBSI CCGCTC 1 cut(s) 444
AccI GTMKAC 1 cut(s) 117
AccII CGCG 1 cut(s) 126
AciI CCGC 2 cut(s) 77, 444
AclWI GGATC 2 cut(s) 374, 387
AcsI RAATTY 3 cut(s) 354, 517, 566
AdeI CACNNNGTG 1 cut(s) 562
AfaI GTAC 2 cut(s) 393, 585
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 5 cut(s) 26, 35, 187, 248, 554
AleI CACNNNNGTG 1 cut(s) 125
AluBI AGCT 2 cut(s) 74, 482
AluI AGCT 2 cut(s) 74, 482
Alw21I GWGCWC 1 cut(s) 576
AlwI GGATC 2 cut(s) 374, 387
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 1 cut(s) 420
ApoI RAATTY 3 cut(s) 354, 517, 566
AspS9I GGNCC 2 cut(s) 12, 544
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 2 cut(s) 12, 544
BamHI GGATCC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 576
BceAI ACGGC 1 cut(s) 255
BciVI GTATCC 1 cut(s) 400
BfaI CTAG 1 cut(s) 598
BfuI GTATCC 1 cut(s) 400
BglII AGATCT 1 cut(s) 324
Bme18I GGWCC 2 cut(s) 12, 544
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 12, 544
BmiI GGNNCC 2 cut(s) 381, 545
BpuEI CTTGAG 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 378
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 378
BseGI GGATG 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 157
BseYI CCCAGC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 1 cut(s) 422
BsiHKAI GWGCWC 1 cut(s) 576
BsiHKCI CYCGRG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 557
BsnI GGCC 1 cut(s) 422
BsoBI CYCGRG 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 576
Bsp143I GATC 3 cut(s) 264, 324, 379
BspACI CCGC 2 cut(s) 77, 444
BspANI GGCC 1 cut(s) 422
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 381, 545
BspPI GGATC 2 cut(s) 374, 387
BsrBI CCGCTC 1 cut(s) 444
BssMI GATC 3 cut(s) 264, 324, 379
Bst4CI ACNGT 1 cut(s) 583
BstC8I GCNNGC 1 cut(s) 435
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 3 cut(s) 267, 327, 382
BstMBI GATC 3 cut(s) 264, 324, 379
BstMWI GCNNNNNNNGC 3 cut(s) 35, 296, 342
BstNSI RCATGY 1 cut(s) 437
BstUI CGCG 1 cut(s) 126
BstX2I RGATCY 2 cut(s) 324, 379
BstYI RGATCY 2 cut(s) 324, 379
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 1 cut(s) 422
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 2 cut(s) 86, 479
BtsIMutI CAGTG 2 cut(s) 86, 479
Cac8I GCNNGC 1 cut(s) 435
Cfr13I GGNCC 2 cut(s) 12, 544
Csp6I GTAC 2 cut(s) 392, 584
CviAII CATG 4 cut(s) 152, 300, 337, 434
CviJI RGCY 5 cut(s) 50, 74, 150, 422, 482
CviKI_1 RGCY 5 cut(s) 50, 74, 150, 422, 482
CviQI GTAC 2 cut(s) 392, 584
DpnI GATC 3 cut(s) 266, 326, 381
DpnII GATC 3 cut(s) 264, 324, 379
DraI TTTAAA 1 cut(s) 522
DraIII CACNNNGTG 1 cut(s) 562
Eco32I GATATC 1 cut(s) 398
Eco47I GGWCC 2 cut(s) 12, 544
Eco88I CYCGRG 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 544
EcoRV GATATC 1 cut(s) 398
EcoT22I ATGCAT 1 cut(s) 338
FaeI CATG 4 cut(s) 155, 303, 340, 437
FaiI YATR 9 cut(s) 90, 153, 288, 301, 338, 435, 453, 458, 531
FaqI GGGAC 1 cut(s) 557
FatI CATG 4 cut(s) 151, 299, 336, 433
FblI GTMKAC 1 cut(s) 117
FokI GGATG 1 cut(s) 203
FspBI CTAG 1 cut(s) 598
GsaI CCCAGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 422
Hin1II CATG 4 cut(s) 155, 303, 340, 437
HinfI GANTC 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 12, 118
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 168
Hpy8I GTNNAC 2 cut(s) 12, 118
HpyAV CCTTC 2 cut(s) 441, 457
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 3 cut(s) 299, 336, 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 296, 342
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 4 cut(s) 155, 303, 340, 437
Kzo9I GATC 3 cut(s) 264, 324, 379
LmnI GCTCC 3 cut(s) 79, 441, 469
LpnPI CCDG 2 cut(s) 84, 495
MaeI CTAG 1 cut(s) 598
MaeII ACGT 1 cut(s) 586
MalI GATC 3 cut(s) 266, 326, 381
MbiI CCGCTC 1 cut(s) 444
MboI GATC 3 cut(s) 264, 324, 379
MboII GAAGA 1 cut(s) 260
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 2 cut(s) 324, 379
MhlI GDGCHC 1 cut(s) 576
MluCI AATT 7 cut(s) 155, 174, 243, 354, 363, 517, 566
MnlI CCTC 3 cut(s) 208, 394, 557
Mph1103I ATGCAT 1 cut(s) 338
MseI TTAA 3 cut(s) 146, 488, 521
MslI CAYNNNNRTG 1 cut(s) 125
MunI CAATTG 1 cut(s) 243
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 3 cut(s) 35, 296, 342
NdeII GATC 3 cut(s) 264, 324, 379
NlaIII CATG 4 cut(s) 155, 303, 340, 437
NlaIV GGNNCC 2 cut(s) 381, 545
NsiI ATGCAT 1 cut(s) 338
NspI RCATGY 1 cut(s) 437
OliI CACNNNNGTG 1 cut(s) 125
PaeI GCATGC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 251
PflMI CCANNNNNTGG 1 cut(s) 157
PpuMI RGGWCCY 1 cut(s) 544
Psp5II RGGWCCY 1 cut(s) 544
PspFI CCCAGC 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 381, 545
PspPI GGNCC 2 cut(s) 12, 544
PspPPI RGGWCCY 1 cut(s) 544
PsuI RGATCY 2 cut(s) 324, 379
RsaI GTAC 2 cut(s) 393, 585
RsaNI GTAC 2 cut(s) 392, 584
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 3 cut(s) 146, 488, 521
Sau3AI GATC 3 cut(s) 264, 324, 379
Sau96I GGNCC 2 cut(s) 12, 544
SduI GDGCHC 1 cut(s) 576
SetI ASST 8 cut(s) 76, 260, 452, 468, 484, 549, 589, 599
SinI GGWCC 2 cut(s) 12, 544
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SphI GCATGC 1 cut(s) 437
Sse9I AATT 7 cut(s) 155, 174, 243, 354, 363, 517, 566
SsiI CCGC 2 cut(s) 77, 444
SspMI CTAG 1 cut(s) 598
TaaI ACNGT 1 cut(s) 583
TaiI ACGT 1 cut(s) 589
TaqI TCGA 1 cut(s) 278
TasI AATT 7 cut(s) 155, 174, 243, 354, 363, 517, 566
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 3 cut(s) 146, 488, 521
Tru9I TTAA 3 cut(s) 146, 488, 521
TscAI CASTG 2 cut(s) 86, 479
TspDTI ATGAA 3 cut(s) 168, 327, 353
TspRI CASTG 2 cut(s) 86, 479
Van91I CCANNNNNTGG 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 12, 544
XapI RAATTY 3 cut(s) 354, 517, 566
XceI RCATGY 1 cut(s) 437
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 1 cut(s) 598
Zsp2I ATGCAT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.