RLG00000036087

Disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
75632919 .. 75633437
519 bp
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UTR
Exon/CDS
Intron
RLM00000036087

Sequence Viewer

Length: 519 bp
ATGGCCTCGAGCAGCCAAAGAGCCTCTGAATCTTTTCCTTCAGCCAAGTCAACAGCTCTCAAGTGGAAGCATGATGTGTTTTTGAGTTTTAGGGGTGAAGACATTCGGAACAATTTTCTCTCTTATTTATACCATGAATTGCAAATCATCAGAAGGATTAATACATTCAAGGATGACGAAGAGCTTGAAGTCGGGGAGCCTATTTCTCCAAGTCTCCTAAAAGCAATCGATGAATCAAGGTTTGCTATTATTGTTCTGTCGCCAAACTATGCTTCTTCTCCATGGTGTTTGGAGGAACTTACAAAAATTGTTCATTGCATGGAAGACACCAGCAGAATTCTGCCACTTTTTTATCATGTGGAACCAGCTGATGTACGACATCAAAAAAATAGTTTTGAAGTAGCCTTCACTAAGCATGAAGAAAAGTCAAGGCATGACACAGAGAAGGTGAAGCAGTGGAGAGATGCTTTAAAAAAAGTGGCTAATTTTTCTGGATGGCATATGCAGAGATATCAGTAA

Protein Analysis

173

Amino Acids

20.19

Weight (kDa)

6.71

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 23 - 170 3.1e-47 TIR domain
TIR_2 PF13676 26 - 137 4.2e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 24
AfaI GTAC 1 cut(s) 375
AgsI TTSAA 3 cut(s) 169, 188, 398
AjuI GAANNNNNNNTTGG 2 cut(s) 256, 288
AluBI AGCT 3 cut(s) 56, 184, 368
AluI AGCT 3 cut(s) 56, 184, 368
Alw26I GTCTC 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 336
AseI ATTAAT 1 cut(s) 159
Asp700I GAANNNNTTC 2 cut(s) 33, 102
AsuHPI GGTGA 2 cut(s) 107, 460
AvaI CYCGRG 1 cut(s) 7
BarI GAAGNNNNNNTAC 2 cut(s) 145, 177
BbsI GAAGAC 2 cut(s) 105, 330
BbvI GCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 218
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 198, 363
BmsI GCATC 1 cut(s) 454
BpiI GAAGAC 2 cut(s) 105, 330
BpuEI CTTGAG 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 313
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 2 cut(s) 178, 500
BseMI GCAATG 1 cut(s) 313
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 7
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 7
Bsp19I CCATGG 1 cut(s) 281
BspANI GGCC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 228
BspLI GGNNCC 2 cut(s) 198, 363
BspQI GCTCTTC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 411
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 2 cut(s) 178, 500
BstMAI GTCTC 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 2 cut(s) 105, 330
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 281
BtsCI GGATG 2 cut(s) 178, 500
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 1 cut(s) 461
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 1 cut(s) 374
CviAII CATG 7 cut(s) 71, 134, 282, 319, 356, 416, 434
CviQI GTAC 1 cut(s) 374
DdeI CTNAG 1 cut(s) 411
DraI TTTAAA 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 281
Eco32I GATATC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 24
Eco88I CYCGRG 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 336
EcoRV GATATC 1 cut(s) 512
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 7 cut(s) 74, 137, 285, 322, 359, 419, 437
FatI CATG 7 cut(s) 70, 133, 281, 318, 355, 415, 433
FauNDI CATATG 1 cut(s) 501
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 2 cut(s) 185, 507
Fsp4HI GCNGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 13
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 7 cut(s) 74, 137, 285, 322, 359, 419, 437
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 2 cut(s) 29, 233
HphI GGTGA 2 cut(s) 107, 460
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 3 cut(s) 28, 108, 152
Hpy188III TCNNGA 1 cut(s) 492
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 4 cut(s) 48, 147, 415, 439
HpyCH4V TGCA 3 cut(s) 142, 318, 505
HpyF3I CTNAG 1 cut(s) 411
Hsp92II CATG 7 cut(s) 74, 137, 285, 322, 359, 419, 437
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 3 cut(s) 343, 378, 477
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 454
MboII GAAGA 5 cut(s) 110, 191, 267, 335, 431
MluCI AATT 5 cut(s) 112, 137, 306, 336, 484
MnlI CCTC 3 cut(s) 16, 34, 286
MroXI GAANNNNTTC 2 cut(s) 33, 102
MseI TTAA 2 cut(s) 159, 470
MspA1I CMGCKG 1 cut(s) 368
NcoI CCATGG 1 cut(s) 281
NdeI CATATG 1 cut(s) 501
NlaIII CATG 7 cut(s) 74, 137, 285, 322, 359, 419, 437
NlaIV GGNNCC 2 cut(s) 198, 363
PaeR7I CTCGAG 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 174
PdmI GAANNNNTTC 2 cut(s) 33, 102
PfeI GAWTC 2 cut(s) 29, 233
PkrI GCNGC 1 cut(s) 14
PshBI ATTAAT 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 198, 363
PspXI VCTCGAGB 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 159, 470
SatI GCNGC 1 cut(s) 13
SetI ASST 5 cut(s) 58, 186, 242, 370, 450
SfaNI GCATC 1 cut(s) 454
Sfr274I CTCGAG 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 7
SmlI CTYRAG 2 cut(s) 7, 59
SmoI CTYRAG 2 cut(s) 7, 59
Sse9I AATT 5 cut(s) 112, 137, 306, 336, 484
StyI CCWWGG 1 cut(s) 281
TaqI TCGA 2 cut(s) 8, 228
TasI AATT 5 cut(s) 112, 137, 306, 336, 484
TfiI GAWTC 2 cut(s) 29, 233
Tru1I TTAA 2 cut(s) 159, 470
Tru9I TTAA 2 cut(s) 159, 470
TscAI CASTG 1 cut(s) 461
TseI GCWGC 1 cut(s) 12
TspDTI ATGAA 4 cut(s) 150, 246, 302, 432
TspRI CASTG 1 cut(s) 461
VspI ATTAAT 1 cut(s) 159
XapI RAATTY 1 cut(s) 336
XhoI CTCGAG 1 cut(s) 7
XmnI GAANNNNTTC 2 cut(s) 33, 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.