RLG00000035452

Belongs to the formin-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000466
Physical Location & Seq
Reverse (-)
67063829 .. 67064509
681 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035452

Sequence Viewer

Length: 477 bp
ATGGAACTTTTGTTTTCAATGGCCTTGATCAACCTAAAAGGCGACCTGGGTGAGGACACTCGTCAGGGTTTTGTGTCCGATTTACTAACTGAATTGCAAAAGAGACCAGCACACCTGAACATAGTAAAGAATGATGAACCACTTCCAAAAGGGCGGAATATATCTTCGTATCTCCTAAACGCCATAGAAGAGGTGAGGTTTGCCATTGTTGTTCTTTCGCAACACTTTGCTTATTCATCATGGTGCCTAGAGGAACTAGCAAAGATTTTTGAATGCATGGAAAACCAAAATAGAATTCTGCCAATCTTTTATCATGTGGATCCCTCTGAGGTGCGACATCAAAGGGGGAGTTTTGAAGATGCCTTCGCTGTACATGAAGAAAGATTTCGGGATAATCCTGAGAAGGTCAGGCGGTGGAGAGACGTTTTATCAATGGTGGCTGATCTCTCTGGATGGAATTCAGAGGATTATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
FH2 PTEN_C2

Protein Analysis

159

Amino Acids

18.47

Weight (kDa)

5.06

Isoelectric Point (pI)

61.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 17 - 156 1.6e-35 TIR domain
TIR_2 PF13676 22 - 109 2.4e-09 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 243
AciI CCGC 2 cut(s) 154, 412
AclWI GGATC 2 cut(s) 314, 327
AcsI RAATTY 2 cut(s) 294, 457
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 3 cut(s) 18, 272, 356
AjnI CCWGG 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
Alw26I GTCTC 2 cut(s) 97, 414
AlwI GGATC 2 cut(s) 314, 327
AoxI GGCC 1 cut(s) 21
ApoI RAATTY 2 cut(s) 294, 457
Asp700I GAANNNNTTC 2 cut(s) 141, 384
AsuHPI GGTGA 2 cut(s) 62, 205
BamHI GGATCC 1 cut(s) 319
BanI GGYRCC 1 cut(s) 243
BccI CCATC 1 cut(s) 447
BciT130I CCWGG 1 cut(s) 47
BclI TGATCA 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 97, 414
BfaI CTAG 2 cut(s) 248, 257
Bme1390I CCNGG 1 cut(s) 47
BmiI GGNNCC 2 cut(s) 245, 321
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 349
BoxI GACNNNNGTC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 52
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 458
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 318, 390
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 97, 414
BsmBI CGTCTC 1 cut(s) 414
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 23
Bso31I GGTCTC 1 cut(s) 97
Bsp1407I TGTACA 1 cut(s) 370
Bsp143I GATC 3 cut(s) 27, 319, 442
BspACI CCGC 2 cut(s) 154, 412
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 2 cut(s) 319, 391
BspLI GGNNCC 2 cut(s) 245, 321
BspPI GGATC 2 cut(s) 314, 327
BspT107I GGYRCC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 3 cut(s) 27, 319, 442
Bst2UI CCWGG 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 183
BstAUI TGTACA 1 cut(s) 370
BstDEI CTNAG 2 cut(s) 327, 399
BstENI CCTNNNNNAGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 458
BstKTI GATC 3 cut(s) 30, 322, 445
BstMAI GTCTC 2 cut(s) 97, 414
BstMBI GATC 3 cut(s) 27, 319, 442
BstNI CCWGG 1 cut(s) 47
BstPAI GACNNNNGTC 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 458
Csp6I GTAC 1 cut(s) 371
CviAII CATG 4 cut(s) 240, 277, 314, 374
CviJI RGCY 2 cut(s) 23, 440
CviKI_1 RGCY 2 cut(s) 23, 440
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 2 cut(s) 327, 399
DpnI GATC 3 cut(s) 29, 321, 444
DpnII GATC 3 cut(s) 27, 319, 442
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EciI GGCGGA 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 97
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoRI GAATTC 2 cut(s) 294, 457
EcoRII CCWGG 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 278
Esp3I CGTCTC 1 cut(s) 414
FaeI CATG 4 cut(s) 243, 280, 317, 377
FaiI YATR 8 cut(s) 122, 161, 185, 241, 278, 315, 375, 471
FatI CATG 4 cut(s) 239, 276, 313, 373
FbaI TGATCA 1 cut(s) 27
FokI GGATG 1 cut(s) 465
FspBI CTAG 2 cut(s) 248, 257
HaeIII GGCC 1 cut(s) 23
Hin1II CATG 4 cut(s) 243, 280, 317, 377
HphI GGTGA 2 cut(s) 62, 205
Hpy188I TCNGA 3 cut(s) 79, 328, 463
Hpy188III TCNNGA 3 cut(s) 389, 398, 450
HpyAV CCTTC 2 cut(s) 373, 397
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 2 cut(s) 97, 276
HpyF3I CTNAG 2 cut(s) 327, 399
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 4 cut(s) 243, 280, 317, 377
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 3 cut(s) 27, 319, 442
LpnPI CCDG 8 cut(s) 32, 50, 59, 120, 128, 394, 411, 435
LweI GCATC 1 cut(s) 349
MaeI CTAG 2 cut(s) 248, 257
MaeII ACGT 1 cut(s) 423
MalI GATC 3 cut(s) 29, 321, 444
MboI GATC 3 cut(s) 27, 319, 442
MboII GAAGA 4 cut(s) 156, 200, 368, 389
MflI RGATCY 1 cut(s) 319
MluCI AATT 3 cut(s) 92, 294, 457
MnlI CCTC 7 cut(s) 46, 184, 189, 244, 322, 334, 457
Mph1103I ATGCAT 1 cut(s) 278
MroXI GAANNNNTTC 2 cut(s) 141, 384
MslI CAYNNNNRTG 1 cut(s) 241
MspR9I CCNGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 278
MvaI CCWGG 1 cut(s) 47
NdeII GATC 3 cut(s) 27, 319, 442
NlaIII CATG 4 cut(s) 243, 280, 317, 377
NlaIV GGNNCC 2 cut(s) 245, 321
NsiI ATGCAT 1 cut(s) 278
PctI GAATGC 1 cut(s) 278
PdmI GAANNNNTTC 2 cut(s) 141, 384
PshAI GACNNNNGTC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 245, 321
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 241
Sau3AI GATC 3 cut(s) 27, 319, 442
ScrFI CCNGG 1 cut(s) 47
SetI ASST 8 cut(s) 36, 48, 117, 195, 200, 333, 408, 426
SfaNI GCATC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 241
Sse9I AATT 3 cut(s) 92, 294, 457
SsiI CCGC 2 cut(s) 154, 412
SspMI CTAG 2 cut(s) 248, 257
StyD4I CCNGG 1 cut(s) 45
TaiI ACGT 1 cut(s) 426
TasI AATT 3 cut(s) 92, 294, 457
TatI WGTACW 1 cut(s) 370
TspDTI ATGAA 3 cut(s) 150, 225, 390
XagI CCTNNNNNAGG 1 cut(s) 50
XapI RAATTY 2 cut(s) 294, 457
XmnI GAANNNNTTC 2 cut(s) 141, 384
XspI CTAG 2 cut(s) 248, 257
Zsp2I ATGCAT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.