RLG00000036762

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000466
Physical Location & Seq
Reverse (-)
84250637 .. 84251140
504 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036762

Sequence Viewer

Length: 504 bp
ATGGCCTCCGGCTCCCGAATAGCATGTGGATCTCCTCCTTCATCAGATCCATGTTGGAAGTATGATGTGTTTTTGAGTTTCAGGGGTGTAGACACTCGCAAGGGGGTTACAGTCGACTTACACGATCGACTTAATAGGAGAGGAATTAAAACATTTATGGATGATCGAGATCTTGAAGTGGGGGATGGTATTTCTCCAGCTCTGTTAGCAGCAATCAAAGAATCAAAGTTTGCAATTGTTGTTCTCTCGCAAAATTATGCTTCTTCTGCTTGGTGTCTGGAGGAACTTAGAGAGATTTGTCTATCCATGGAAGACAACAGAATTTTGCCTCTTTTCTATCACGTTGATCCTACTCATGTTCGATATCAGAAAGAGAGTTTCGAAAAAGCTTTCTCTAAGCATGAAACCTCTGGGCGACATGTATCAGAGAAAGTGAAGCAATGGAAAGCTGCTTTTAACAATTTCGCCAATATTTCTGGGTGGAATACAAATGATCATAAGTAA

Protein Analysis

168

Amino Acids

18.98

Weight (kDa)

7.71

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 20 - 164 1.3e-43 TIR domain
TIR_2 PF13676 23 - 117 5e-17 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 90, 114
AclWI GGATC 3 cut(s) 37, 41, 341
AcsI RAATTY 1 cut(s) 321
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 3 cut(s) 200, 389, 449
AluI AGCT 3 cut(s) 200, 389, 449
AlwI GGATC 3 cut(s) 37, 41, 341
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 209, 449
ApoI RAATTY 1 cut(s) 321
AsuII TTCGAA 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 2 cut(s) 221, 436
BccI CCATC 1 cut(s) 179
BclI TGATCA 1 cut(s) 493
BglII AGATCT 1 cut(s) 169
BisI GCNGC 2 cut(s) 210, 450
BlsI GCNGC 2 cut(s) 211, 451
BmiI GGNNCC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 2 cut(s) 180, 299
Bpu14I TTCGAA 1 cut(s) 381
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 446
Bse8I GATNNNNATC 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 2 cut(s) 166, 190
BseJI GATNNNNATC 1 cut(s) 168
BseMI GCAATG 1 cut(s) 446
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 2 cut(s) 221, 436
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 9
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 381
Bsp143I GATC 7 cut(s) 29, 46, 124, 163, 169, 346, 493
Bsp19I CCATGG 1 cut(s) 306
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 13
BspPI GGATC 3 cut(s) 37, 41, 341
BspT104I TTCGAA 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 446
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 7 cut(s) 29, 46, 124, 163, 169, 346, 493
BssT1I CCWWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 287, 396
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 166, 190
BstKTI GATC 7 cut(s) 32, 49, 127, 166, 172, 349, 496
BstMBI GATC 7 cut(s) 29, 46, 124, 163, 169, 346, 493
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 206, 266
BstNSI RCATGY 2 cut(s) 27, 422
BstV1I GCAGC 2 cut(s) 221, 436
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 3 cut(s) 29, 46, 169
BstYI RGATCY 3 cut(s) 29, 46, 169
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 166, 190
CviAII CATG 6 cut(s) 24, 51, 307, 356, 401, 419
CviJI RGCY 5 cut(s) 5, 12, 200, 389, 449
CviKI_1 RGCY 5 cut(s) 5, 12, 200, 389, 449
DdeI CTNAG 2 cut(s) 287, 396
DpnI GATC 7 cut(s) 31, 48, 126, 165, 171, 348, 495
DpnII GATC 7 cut(s) 29, 46, 124, 163, 169, 346, 493
Eco130I CCWWGG 1 cut(s) 306
Eco32I GATATC 1 cut(s) 365
EcoRV GATATC 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 6 cut(s) 27, 54, 310, 359, 404, 422
FatI CATG 6 cut(s) 23, 50, 306, 355, 400, 418
FbaI TGATCA 1 cut(s) 493
FblI GTMKAC 2 cut(s) 90, 114
Fnu4HI GCNGC 2 cut(s) 210, 450
FokI GGATG 2 cut(s) 173, 197
Fsp4HI GCNGC 2 cut(s) 210, 450
GluI GCNGC 2 cut(s) 210, 450
GsuI CTGGAG 2 cut(s) 180, 299
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 9
Hin1II CATG 6 cut(s) 27, 54, 310, 359, 404, 422
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 2 cut(s) 91, 115
Hpy188I TCNGA 3 cut(s) 46, 369, 427
Hpy188III TCNNGA 4 cut(s) 15, 167, 173, 278
Hpy8I GTNNAC 2 cut(s) 91, 115
HpyAV CCTTC 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 266
HpyF3I CTNAG 2 cut(s) 287, 396
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 6 cut(s) 27, 54, 310, 359, 404, 422
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 7 cut(s) 29, 46, 124, 163, 169, 346, 493
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 6 cut(s) 22, 67, 210, 263, 396, 462
Lsp1109I GCAGC 2 cut(s) 221, 436
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 106
MalI GATC 7 cut(s) 31, 48, 126, 165, 171, 348, 495
MboI GATC 7 cut(s) 29, 46, 124, 163, 169, 346, 493
MboII GAAGA 2 cut(s) 255, 323
MfeI CAATTG 1 cut(s) 234
MflI RGATCY 3 cut(s) 29, 46, 169
MluCI AATT 5 cut(s) 144, 234, 253, 321, 460
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 6 cut(s) 16, 45, 134, 274, 339, 418
MseI TTAA 3 cut(s) 132, 147, 456
MspI CCGG 1 cut(s) 9
MunI CAATTG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 206, 266
NcoI CCATGG 1 cut(s) 306
NdeII GATC 7 cut(s) 29, 46, 124, 163, 169, 346, 493
NlaIII CATG 6 cut(s) 27, 54, 310, 359, 404, 422
NlaIV GGNNCC 1 cut(s) 13
NspI RCATGY 2 cut(s) 27, 422
NspV TTCGAA 1 cut(s) 381
PciI ACATGT 1 cut(s) 418
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 2 cut(s) 211, 451
Ple19I CGATCG 1 cut(s) 127
PscI ACATGT 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 13
PsuI RGATCY 3 cut(s) 29, 46, 169
PvuI CGATCG 1 cut(s) 127
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 3 cut(s) 132, 147, 456
SatI GCNGC 2 cut(s) 210, 450
Sau3AI GATC 7 cut(s) 29, 46, 124, 163, 169, 346, 493
SetI ASST 5 cut(s) 202, 345, 391, 410, 451
SfuI TTCGAA 1 cut(s) 381
Sse9I AATT 5 cut(s) 144, 234, 253, 321, 460
SspI AATATT 1 cut(s) 472
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 345
TaqI TCGA 5 cut(s) 114, 127, 166, 361, 381
TasI AATT 5 cut(s) 144, 234, 253, 321, 460
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 3 cut(s) 132, 147, 456
Tru9I TTAA 3 cut(s) 132, 147, 456
TseI GCWGC 2 cut(s) 209, 449
TspDTI ATGAA 2 cut(s) 30, 417
XapI RAATTY 1 cut(s) 321
XceI RCATGY 2 cut(s) 27, 422
XmiI GTMKAC 2 cut(s) 90, 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.