RchiOBHm_Chr6g0250491

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000466
Physical Location & Seq
Forward (+)
5995082 .. 5995321
240 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22454

Sequence Viewer

Length: 192 bp
ATGGGGCAACAAGTCATGCCAGTGTTCTACCAAGTAGATCCATCTCATGTGCGTAAGAACAAGGGATATTTTTTGCAGGCCTTTACAGAACACGAAGAAGTTCATTGGGAGAACAGGGATAAAGTAAGGAAGTGGAGGGCTGCTTTGACAGGCGTGGCCAATCTTTCTGGGTGGGATTTGAGGAACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

63

Amino Acids

7.5

Weight (kDa)

9.3

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 2 - 62 2.2e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 32
AcoI YGGCCR 1 cut(s) 156
AflIII ACRYGT 1 cut(s) 186
AlwI GGATC 1 cut(s) 32
AoxI GGCC 2 cut(s) 78, 156
ApeKI GCWGC 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 99
BalI TGGCCA 1 cut(s) 158
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 49
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 127
BshFI GGCC 2 cut(s) 80, 158
BsnI GGCC 2 cut(s) 80, 158
Bsp143I GATC 1 cut(s) 37
BspANI GGCC 2 cut(s) 80, 158
BspPI GGATC 1 cut(s) 32
BsrI ACTGG 1 cut(s) 20
BssMI GATC 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 78
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 2 cut(s) 80, 158
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 78
CviAII CATG 3 cut(s) 16, 47, 187
CviJI RGCY 3 cut(s) 80, 140, 158
CviKI_1 RGCY 3 cut(s) 80, 140, 158
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 80
FaeI CATG 3 cut(s) 19, 50, 190
FaiI YATR 3 cut(s) 17, 48, 188
FatI CATG 3 cut(s) 15, 46, 186
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
HaeIII GGCC 2 cut(s) 80, 158
Hin1II CATG 3 cut(s) 19, 50, 190
HpyCH4V TGCA 1 cut(s) 76
Hsp92II CATG 3 cut(s) 19, 50, 190
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 5 cut(s) 33, 62, 100, 135, 153
Lsp1109I GCAGC 1 cut(s) 127
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 1 cut(s) 107
MflI RGATCY 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 158
MnlI CCTC 2 cut(s) 129, 174
Mox20I TGGCCA 1 cut(s) 158
MroXI GAANNNNTTC 1 cut(s) 99
MscI TGGCCA 1 cut(s) 158
MslI CAYNNNNRTG 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 158
NdeII GATC 1 cut(s) 37
NlaIII CATG 3 cut(s) 19, 50, 190
NspI RCATGY 1 cut(s) 190
PceI AGGCCT 1 cut(s) 80
PciI ACATGT 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 99
PkrI GCNGC 1 cut(s) 142
PscI ACATGT 1 cut(s) 186
PsuI RGATCY 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 20
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 20
SseBI AGGCCT 1 cut(s) 80
StuI AGGCCT 1 cut(s) 80
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 27
XceI RCATGY 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.