Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000595.1

Orthogroup ID

OG0000466

Physical Location & Seq

Genomic Coordinates Reverse (-)

104903 .. 105472

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000595.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggttgaaaggcgtgaaccaatatctcaggataatcaagaattgatcgacatcgctactgagcccgagagagaagaagaagaagaaaagatgtgggatctcagtgactctcctgatcagggaaacgatggcaccacctcggcagccgcaccggttgcttcttcttcttctctatcatcagctgttgagtggaagtatgatgtgtttttgagtttcaggggtcctgacactcgcaagggtatcacatttgaactatacgatcgactgcagaggaggggaattaaagcattcatggatgatcgagatcttgaagtaggggatgttatttctccaactctcttaagagcaattagagaatcaaggtttgcaatcgttgttctctcgcaaaattatgcttcttctacttggtgtttggaggaacttagagagatttgtttatgcatggaagacaactggattttgccacttttttatcatgttaatcctactgatgttcgatatagaagaggagttttgaagatgctttctctaagcatgaaacctctgggcgacatgaatcagagaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

189

Amino Acids

21.82

Weight (kDa)

4.73

Isoelectric Point (pI)

62.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica	MD12G1125500.v1.1
prunus_persica	Prupe.2G112700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata	RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora	Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa	Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha	Rh1DG060500 Rh6BG033900
rosa_wichuraiana	Rw0G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	119
AflII	CTTAAG	1 cut(s)	340
AgeI	ACCGGT	1 cut(s)	151
AgsI	TTSAA	4 cut(s)	8, 251, 311, 517
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
AlwI	GGATC	1 cut(s)	105
Ama87I	CYCGRG	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	143
AsiGI	ACCGGT	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	122
BclI	TGATCA	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	266
BfrI	CTTAAG	1 cut(s)	340
BglII	AGATCT	1 cut(s)	304
BisI	GCNGC	2 cut(s)	144, 147
BlsI	GCNGC	2 cut(s)	145, 148
Bme18I	GGWCC	1 cut(s)	221
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	133, 222
BmsI	GCATC	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	453
BsaBI	GATNNNNATC	2 cut(s)	50, 303
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	458
Bse8I	GATNNNNATC	2 cut(s)	50, 303
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	301, 325
BseJI	GATNNNNATC	2 cut(s)	50, 303
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	3 cut(s)	41, 51, 115
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	2 cut(s)	286, 522
BseXI	GCAGC	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	262
BshNI	GGYRCC	1 cut(s)	131
BshTI	ACCGGT	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	6 cut(s)	45, 97, 115, 259, 298, 304
BspACI	CCGC	1 cut(s)	147
BspCNI	CTCAG	3 cut(s)	40, 52, 114
BspLI	GGNNCC	2 cut(s)	133, 222
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	6 cut(s)	45, 97, 115, 259, 298, 304
Bst6I	CTCTTC	1 cut(s)	499
BstAFI	CTTAAG	1 cut(s)	340
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstDEI	CTNAG	5 cut(s)	27, 60, 101, 422, 530
BstF5I	GGATG	2 cut(s)	301, 325
BstKTI	GATC	6 cut(s)	48, 100, 118, 262, 301, 307
BstMBI	GATC	6 cut(s)	45, 97, 115, 259, 298, 304
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	2 cut(s)	97, 304
BstYI	RGATCY	2 cut(s)	97, 304
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	301, 325
BtsIMutI	CAGTG	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	221
CspAI	ACCGGT	1 cut(s)	151
CviAII	CATG	5 cut(s)	292, 442, 476, 535, 553
CviJI	RGCY	3 cut(s)	64, 146, 182
CviKI_1	RGCY	3 cut(s)	64, 146, 182
DdeI	CTNAG	5 cut(s)	27, 60, 101, 422, 530
DpnI	GATC	6 cut(s)	47, 99, 117, 261, 300, 306
DpnII	GATC	6 cut(s)	45, 97, 115, 259, 298, 304
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	5 cut(s)	295, 445, 479, 538, 556
FatI	CATG	5 cut(s)	291, 441, 475, 534, 552
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	144, 147
FokI	GGATG	2 cut(s)	308, 332
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	2 cut(s)	144, 147
GluI	GCNGC	2 cut(s)	144, 147
HapII	CCGG	1 cut(s)	152
Hin1II	CATG	5 cut(s)	295, 445, 479, 538, 556
HinfI	GANTC	3 cut(s)	107, 356, 556
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	1 cut(s)	561
Hpy188III	TCNNGA	6 cut(s)	29, 38, 113, 224, 302, 308
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	558
HpyCH4V	TGCA	3 cut(s)	268, 368, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	5 cut(s)	27, 60, 101, 422, 530
Hsp92II	CATG	5 cut(s)	295, 445, 479, 538, 556
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	6 cut(s)	45, 97, 115, 259, 298, 304
LpnPI	CCDG	8 cut(s)	14, 104, 126, 165, 202, 237, 439, 530
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	6 cut(s)	47, 99, 117, 261, 300, 306
MboI	GATC	6 cut(s)	45, 97, 115, 259, 298, 304
MflI	RGATCY	2 cut(s)	97, 304
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	4 cut(s)	41, 279, 348, 388
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	6 cut(s)	148, 264, 267, 409, 500, 552
Mph1103I	ATGCAT	1 cut(s)	443
MseI	TTAA	3 cut(s)	282, 341, 480
MspA1I	CMGCKG	1 cut(s)	182
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	6 cut(s)	45, 97, 115, 259, 298, 304
NlaIII	CATG	5 cut(s)	295, 445, 479, 538, 556
NlaIV	GGNNCC	2 cut(s)	133, 222
NmeAIII	GCCGAG	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	104
NsiI	ATGCAT	1 cut(s)	443
PctI	GAATGC	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	356, 556
PinAI	ACCGGT	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	145, 148
Ple19I	CGATCG	1 cut(s)	262
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	133, 222
PspPI	GGNCC	1 cut(s)	221
PspPPI	RGGWCCY	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	270
PsuI	RGATCY	2 cut(s)	97, 304
PvuI	CGATCG	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	282, 341, 480
SatI	GCNGC	2 cut(s)	144, 147
Sau3AI	GATC	6 cut(s)	45, 97, 115, 259, 298, 304
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	5 cut(s)	140, 184, 365, 544, 569
SfaNI	GCATC	1 cut(s)	510
SfcI	CTRYAG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	4 cut(s)	41, 279, 348, 388
SsiI	CCGC	1 cut(s)	147
TaqI	TCGA	4 cut(s)	48, 262, 301, 496
TasI	AATT	4 cut(s)	41, 279, 348, 388
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	356, 556
Tru1I	TTAA	3 cut(s)	282, 341, 480
Tru9I	TTAA	3 cut(s)	282, 341, 480
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	3 cut(s)	280, 551, 569
TspRI	CASTG	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	221
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.