Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000466

Physical Location & Seq

Genomic Coordinates Forward (+)

5211486 .. 5213984

Gene Structure 2499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCCTCCAGCTCCCAAATAGCCTGTGCATCTCCTCCTTCATCAGATCCATGTTGGAAATATGATGTGTTTTTGAGTTTTAGGGGTTTAGACACTCGCAAGGGGATTACAGTCGACATATATGATGCACTTGAGAGGAGAGGAATTAAAACATTCATGGATGATCGAGATCTTGAAGTAGGGGATGTTATTACTCCCGCTCTCTTAACCGCAATCAAAGAATCAAGGTTTGCAATCATTGTTCTCTCACAAAATTATGCTTCTTCTGCTTGGTGTTTGGAGGAACTTAGAGAGATTTGTCTATCCATGGAAGACAACAGAATTTTGCCACTTTTTTATCAAGTTGATCCTACTGATGTTCGATATCAGAAGAAGAGTTTCGAAGAAGCTTTCTCCAAACATGAAACCTCTGGCCGACATGAATCAGAGAAGGTCCAGCAGTGGAGAGATGCTTTAAACAAAGTGGCCAATATCTCAGGGTGGAATACATCTGATTATAAGACTCACAAAGAACTTGTTGACGGCATTGTGGAATTTCTCTGCAGTAAAGTAGTACCAGATGCAATTGAGTCCACAGGAGATTTCGAAGCATTTAAAGCAACAAGACAAGCCATGAATGAGGTTATCGAGGCCCTTAAAGATGACGAGGCCACTGCCATTGGTGTCTACGGCATGGGAGGCGTCGGCAAGACAACCATGGTAAAACATATCGGTGCACATGCCCGAAAAGAGGGATTTTTGATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

249

Amino Acids

27.92

Weight (kDa)

5.16

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	20 - 184	1.3e-47	TIR domain
TIR_2	PF13676	23 - 117	9.4e-17	TIR domain
NB-ARC	PF00931	203 - 240	1.3e-06	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica	MD12G1125500.v1.1
prunus_persica	Prupe.2G112700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata	RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora	Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa	Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha	Rh1DG060500 Rh6BG033900
rosa_wichuraiana	Rw0G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
AccBSI	CCGCTC	1 cut(s)	200
AccI	GTMKAC	2 cut(s)	114, 666
AciI	CCGC	2 cut(s)	198, 210
AclWI	GGATC	2 cut(s)	41, 341
AcoI	YGGCCR	2 cut(s)	412, 465
AcsI	RAATTY	2 cut(s)	321, 533
AcyI	GRCGYC	1 cut(s)	681
AfaI	GTAC	1 cut(s)	555
AfiI	CCNNNNNNNGG	1 cut(s)	730
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	2 cut(s)	12, 389
AluI	AGCT	2 cut(s)	12, 389
Alw21I	GWGCWC	1 cut(s)	718
Alw44I	GTGCAC	1 cut(s)	714
AlwI	GGATC	2 cut(s)	41, 341
AoxI	GGCC	5 cut(s)	3, 412, 465, 630, 648
ApaLI	GTGCAC	1 cut(s)	714
ApoI	RAATTY	2 cut(s)	321, 533
Asp700I	GAANNNNTTC	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	433, 631
AsuII	TTCGAA	2 cut(s)	381, 585
AvaII	GGWCC	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	718
BalI	TGGCCA	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	718
BceAI	ACGGC	2 cut(s)	538, 685
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BfmI	CTRYAG	1 cut(s)	541
BglII	AGATCT	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	433, 631
BmsI	GCATC	4 cut(s)	38, 115, 439, 550
BpiI	GAAGAC	1 cut(s)	318
Bpu14I	TTCGAA	2 cut(s)	381, 585
BpuEI	CTTGAG	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	681
BsaJI	CCNNGG	2 cut(s)	306, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	730
Bse8I	GATNNNNATC	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	306, 696
BseGI	GGATG	2 cut(s)	166, 190
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	730
BseMII	CTCAG	1 cut(s)	489
BseRI	GAGGAG	2 cut(s)	24, 151
BseSI	GKGCMC	1 cut(s)	718
BshFI	GGCC	5 cut(s)	5, 414, 467, 632, 650
BsiHKAI	GWGCWC	1 cut(s)	718
BslI	CCNNNNNNNGG	1 cut(s)	730
BsnI	GGCC	5 cut(s)	5, 414, 467, 632, 650
Bsp119I	TTCGAA	2 cut(s)	381, 585
Bsp1286I	GDGCHC	1 cut(s)	718
Bsp143I	GATC	4 cut(s)	46, 163, 169, 346
Bsp19I	CCATGG	2 cut(s)	306, 696
BspACI	CCGC	2 cut(s)	198, 210
BspANI	GGCC	5 cut(s)	5, 414, 467, 632, 650
BspCNI	CTCAG	1 cut(s)	488
BspMAI	CTGCAG	1 cut(s)	545
BspPI	GGATC	2 cut(s)	41, 341
BspT104I	TTCGAA	2 cut(s)	381, 585
BsrBI	CCGCTC	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	306, 696
BssMI	GATC	4 cut(s)	46, 163, 169, 346
BssNI	GRCGYC	1 cut(s)	681
BssT1I	CCWWGG	2 cut(s)	306, 696
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	681
BstBI	TTCGAA	2 cut(s)	381, 585
BstDEI	CTNAG	2 cut(s)	287, 475
BstDSI	CCRYGG	2 cut(s)	306, 696
BstF5I	GGATG	2 cut(s)	166, 190
BstKTI	GATC	4 cut(s)	49, 166, 172, 349
BstMBI	GATC	4 cut(s)	46, 163, 169, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 596, 678
BstNSI	RCATGY	1 cut(s)	722
BstSFI	CTRYAG	1 cut(s)	541
BstSLI	GKGCMC	1 cut(s)	718
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	2 cut(s)	46, 169
BstYI	RGATCY	2 cut(s)	46, 169
BsuRI	GGCC	5 cut(s)	5, 414, 467, 632, 650
BtgI	CCRYGG	2 cut(s)	306, 696
BtsCI	GGATG	2 cut(s)	166, 190
BtsI	GCAGTG	2 cut(s)	446, 651
BtsIMutI	CAGTG	2 cut(s)	446, 651
Cfr13I	GGNCC	2 cut(s)	433, 631
CseI	GACGC	1 cut(s)	670
Csp6I	GTAC	1 cut(s)	554
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	9 cut(s)	51, 157, 307, 401, 419, 613, 673, 697, 719
CviJI	RGCY	9 cut(s)	5, 12, 23, 389, 414, 467, 611, 632, 650
CviKI_1	RGCY	9 cut(s)	5, 12, 23, 389, 414, 467, 611, 632, 650
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	2 cut(s)	287, 475
DpnI	GATC	4 cut(s)	48, 165, 171, 348
DpnII	GATC	4 cut(s)	46, 163, 169, 346
DraI	TTTAAA	2 cut(s)	456, 595
EaeI	YGGCCR	2 cut(s)	412, 465
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco130I	CCWWGG	2 cut(s)	306, 696
Eco32I	GATATC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	631
EcoRV	GATATC	1 cut(s)	365
EcoT14I	CCWWGG	2 cut(s)	306, 696
ErhI	CCWWGG	2 cut(s)	306, 696
FaeI	CATG	9 cut(s)	54, 160, 310, 404, 422, 616, 676, 700, 722
FatI	CATG	9 cut(s)	50, 156, 306, 400, 418, 612, 672, 696, 718
FauI	CCCGC	1 cut(s)	205
FblI	GTMKAC	2 cut(s)	114, 666
FokI	GGATG	2 cut(s)	173, 197
HaeIII	GGCC	5 cut(s)	5, 414, 467, 632, 650
HgaI	GACGC	1 cut(s)	670
Hin1I	GRCGYC	1 cut(s)	681
Hin1II	CATG	9 cut(s)	54, 160, 310, 404, 422, 616, 676, 700, 722
HincII	GTYRAC	2 cut(s)	115, 520
HindII	GTYRAC	2 cut(s)	115, 520
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	4 cut(s)	221, 422, 502, 569
Hpy166II	GTNNAC	5 cut(s)	115, 520, 573, 667, 716
Hpy188I	TCNGA	4 cut(s)	46, 369, 427, 493
Hpy188III	TCNNGA	2 cut(s)	167, 173
Hpy8I	GTNNAC	5 cut(s)	115, 520, 573, 667, 716
Hpy99I	CGWCG	1 cut(s)	686
HpyAV	CCTTC	2 cut(s)	48, 424
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	6 cut(s)	29, 128, 233, 543, 563, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 596, 678
HpyF3I	CTNAG	2 cut(s)	287, 475
Hsp92I	GRCGYC	1 cut(s)	681
Hsp92II	CATG	9 cut(s)	54, 160, 310, 404, 422, 616, 676, 700, 722
Kzo9I	GATC	4 cut(s)	46, 163, 169, 346
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	7 cut(s)	22, 37, 396, 449, 462, 561, 570
LweI	GCATC	4 cut(s)	38, 115, 439, 550
MalI	GATC	4 cut(s)	48, 165, 171, 348
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	4 cut(s)	46, 163, 169, 346
MboII	GAAGA	5 cut(s)	255, 323, 382, 385, 395
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	2 cut(s)	46, 169
MhlI	GDGCHC	1 cut(s)	718
MlsI	TGGCCA	1 cut(s)	467
MluCI	AATT	5 cut(s)	144, 253, 321, 533, 564
MluNI	TGGCCA	1 cut(s)	467
MlyI	GAGTC	2 cut(s)	496, 578
MmeI	TCCRAC	1 cut(s)	35
Mox20I	TGGCCA	1 cut(s)	467
MroXI	GAANNNNTTC	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	5 cut(s)	147, 206, 455, 594, 636
MslI	CAYNNNNRTG	1 cut(s)	711
Msp20I	TGGCCA	1 cut(s)	467
MunI	CAATTG	1 cut(s)	564
MwoI	GCNNNNNNNGC	3 cut(s)	266, 596, 678
NcoI	CCATGG	2 cut(s)	306, 696
NdeII	GATC	4 cut(s)	46, 163, 169, 346
NlaIII	CATG	9 cut(s)	54, 160, 310, 404, 422, 616, 676, 700, 722
NspI	RCATGY	1 cut(s)	722
NspV	TTCGAA	2 cut(s)	381, 585
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	221, 422
PleI	GAGTC	2 cut(s)	496, 577
PpsI	GAGTC	2 cut(s)	496, 577
PsiI	TTATAA	1 cut(s)	498
PspPI	GGNCC	2 cut(s)	433, 631
PstI	CTGCAG	1 cut(s)	545
PsuI	RGATCY	2 cut(s)	46, 169
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
RseI	CAYNNNNRTG	1 cut(s)	711
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	5 cut(s)	147, 206, 455, 594, 636
Sau3AI	GATC	4 cut(s)	46, 163, 169, 346
Sau96I	GGNCC	2 cut(s)	433, 631
SchI	GAGTC	2 cut(s)	496, 578
SduI	GDGCHC	1 cut(s)	718
SetI	ASST	6 cut(s)	14, 230, 391, 410, 435, 624
SfaNI	GCATC	4 cut(s)	38, 115, 439, 550
SfcI	CTRYAG	1 cut(s)	541
SfuI	TTCGAA	2 cut(s)	381, 585
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	5 cut(s)	144, 253, 321, 533, 564
SsiI	CCGC	2 cut(s)	198, 210
StyI	CCWWGG	2 cut(s)	306, 696
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	6 cut(s)	114, 166, 361, 381, 585, 627
TasI	AATT	5 cut(s)	144, 253, 321, 533, 564
TfiI	GAWTC	2 cut(s)	221, 422
Tru1I	TTAA	5 cut(s)	147, 206, 455, 594, 636
Tru9I	TTAA	5 cut(s)	147, 206, 455, 594, 636
TscAI	CASTG	2 cut(s)	446, 658
TspDTI	ATGAA	5 cut(s)	30, 145, 417, 435, 629
TspRI	CASTG	2 cut(s)	446, 658
VneI	GTGCAC	1 cut(s)	714
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	2 cut(s)	321, 533
XceI	RCATGY	1 cut(s)	722
XmiI	GTMKAC	2 cut(s)	114, 666
XmnI	GAANNNNTTC	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.