RLG00000036827

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000466
Physical Location & Seq
Reverse (-)
85324161 .. 85324643
483 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036827

Sequence Viewer

Length: 483 bp
ATGGCCTCCTCTTCGTCATCATCAGCTCGTCGCTGGAAGTATGATGTTTTTTTGAGTTTCAGGGGTCCTGACACTCGCAAGGGGATTACATTCGACATACACGATCGACTTAATAGGAGTGGAATTAAAACGTTCATGGATGATCGAGATCTTGAAGTAGGGAATGTTATTAGTCCCGCTCTCTTAACAGCAATCAGCGGATCAAAGTTTGCAATCGTTGTTCTCTCGCAAAATTATGCTTCTTCTGCTTGGTGTTTGGAGGAACTTAGAGAGATTTGTCTATCCATGGAAGACAGCAGAATTTTGCCACTTTTTTATGATGTTGATCCTACTGATGTTAGATATCAGAAGAAGAGTTTCGAAGATGCTTTCTCTAAGCATGAAACCTCTGAGCGACATGAATCAGAGAAGGTGAAGCAATGGAGAGCTGTTTTAAACAAAGTGGCCAATATCTCTGGGTGGAATACAAATGATTATAAGTAG

Protein Analysis

161

Amino Acids

18.37

Weight (kDa)

6.83

Isoelectric Point (pI)

57.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 13 - 158 6.5e-43 TIR domain
TIR_2 PF13676 16 - 124 9.3e-16 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AccBSI CCGCTC 1 cut(s) 179
AciI CCGC 2 cut(s) 177, 198
AclI AACGTT 1 cut(s) 131
AclWI GGATC 2 cut(s) 208, 320
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 1 cut(s) 300
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 2 cut(s) 26, 428
AluI AGCT 2 cut(s) 26, 428
AlwI GGATC 2 cut(s) 208, 320
AoxI GGCC 2 cut(s) 3, 444
ApoI RAATTY 1 cut(s) 300
Asp700I GAANNNNTTC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 424
AsuII TTCGAA 1 cut(s) 360
AvaII GGWCC 1 cut(s) 65
BalI TGGCCA 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 297
BglII AGATCT 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 66
BmsI GCATC 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 360
BsaBI GATNNNNATC 2 cut(s) 147, 324
BsaJI CCNNGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 425
Bse8I GATNNNNATC 2 cut(s) 147, 324
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 145
BseJI GATNNNNATC 2 cut(s) 147, 324
BseMI GCAATG 1 cut(s) 425
BseMII CTCAG 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 2 cut(s) 5, 446
BsiEI CGRYCG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 2 cut(s) 5, 446
Bsp119I TTCGAA 1 cut(s) 360
Bsp143I GATC 5 cut(s) 103, 142, 148, 200, 325
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 2 cut(s) 177, 198
BspANI GGCC 2 cut(s) 5, 446
BspCNI CTCAG 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 2 cut(s) 208, 320
BspT104I TTCGAA 1 cut(s) 360
BsrBI CCGCTC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 5 cut(s) 103, 142, 148, 200, 325
BssT1I CCWWGG 1 cut(s) 285
Bst6I CTCTTC 2 cut(s) 16, 347
BstBI TTCGAA 1 cut(s) 360
BstDEI CTNAG 3 cut(s) 266, 375, 390
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 5 cut(s) 106, 145, 151, 203, 328
BstMBI GATC 5 cut(s) 103, 142, 148, 200, 325
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 2 cut(s) 5, 446
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 65
CviAII CATG 4 cut(s) 136, 286, 380, 398
CviJI RGCY 4 cut(s) 5, 26, 428, 446
CviKI_1 RGCY 4 cut(s) 5, 26, 428, 446
DdeI CTNAG 3 cut(s) 266, 375, 390
DpnI GATC 5 cut(s) 105, 144, 150, 202, 327
DpnII GATC 5 cut(s) 103, 142, 148, 200, 325
DraI TTTAAA 1 cut(s) 435
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 2 cut(s) 16, 347
EarI CTCTTC 2 cut(s) 16, 347
Eco130I CCWWGG 1 cut(s) 285
Eco32I GATATC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 65
EcoRV GATATC 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 4 cut(s) 139, 289, 383, 401
FaiI YATR 9 cut(s) 42, 98, 137, 237, 287, 318, 381, 399, 477
FaqI GGGAC 1 cut(s) 159
FatI CATG 4 cut(s) 135, 285, 379, 397
FauI CCCGC 1 cut(s) 184
FokI GGATG 1 cut(s) 152
HaeIII GGCC 2 cut(s) 5, 446
Hin1II CATG 4 cut(s) 139, 289, 383, 401
HinfI GANTC 1 cut(s) 401
HphI GGTGA 1 cut(s) 424
Hpy188I TCNGA 3 cut(s) 348, 391, 406
Hpy188III TCNNGA 3 cut(s) 68, 146, 152
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 403
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 3 cut(s) 266, 375, 390
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 4 cut(s) 139, 289, 383, 401
Kzo9I GATC 5 cut(s) 103, 142, 148, 200, 325
LpnPI CCDG 4 cut(s) 19, 46, 81, 441
LweI GCATC 1 cut(s) 355
MaeII ACGT 1 cut(s) 131
MalI GATC 5 cut(s) 105, 144, 150, 202, 327
MbiI CCGCTC 1 cut(s) 179
MboI GATC 5 cut(s) 103, 142, 148, 200, 325
MboII GAAGA 6 cut(s) 3, 234, 302, 361, 364, 374
MflI RGATCY 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 3 cut(s) 123, 232, 300
MluNI TGGCCA 1 cut(s) 446
MnlI CCTC 4 cut(s) 16, 19, 253, 397
Mox20I TGGCCA 1 cut(s) 446
MroXI GAANNNNTTC 1 cut(s) 356
MscI TGGCCA 1 cut(s) 446
MseI TTAA 4 cut(s) 111, 126, 185, 434
Msp20I TGGCCA 1 cut(s) 446
MspA1I CMGCKG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 245
NcoI CCATGG 1 cut(s) 285
NdeII GATC 5 cut(s) 103, 142, 148, 200, 325
NlaIII CATG 4 cut(s) 139, 289, 383, 401
NlaIV GGNNCC 1 cut(s) 66
NspV TTCGAA 1 cut(s) 360
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 401
Ple19I CGATCG 1 cut(s) 106
PpuMI RGGWCCY 1 cut(s) 65
PsiI TTATAA 1 cut(s) 477
Psp1406I AACGTT 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 65
PspPPI RGGWCCY 1 cut(s) 65
PsuI RGATCY 1 cut(s) 148
PvuI CGATCG 1 cut(s) 106
SaqAI TTAA 4 cut(s) 111, 126, 185, 434
Sau3AI GATC 5 cut(s) 103, 142, 148, 200, 325
Sau96I GGNCC 1 cut(s) 65
SetI ASST 5 cut(s) 28, 134, 389, 414, 430
SfaNI GCATC 1 cut(s) 355
SfuI TTCGAA 1 cut(s) 360
SinI GGWCC 1 cut(s) 65
Sse9I AATT 3 cut(s) 123, 232, 300
SsiI CCGC 2 cut(s) 177, 198
StyI CCWWGG 1 cut(s) 285
TaiI ACGT 1 cut(s) 134
TaqI TCGA 4 cut(s) 93, 106, 145, 360
TasI AATT 3 cut(s) 123, 232, 300
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 4 cut(s) 111, 126, 185, 434
Tru9I TTAA 4 cut(s) 111, 126, 185, 434
TspDTI ATGAA 3 cut(s) 124, 396, 414
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.