Rmu_sc0001148.1_g000041

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001148.1
OG0000466
Physical Location & Seq
Forward (+)
168289 .. 169953
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001148.1_g000041.1.cds

Sequence Viewer

Length: 1560 bp
atggaggggaaaaccattattgcggtgattgttgcatgggtcagttacatggcgattaataagtggatatggacgccaatgaagcggggtccaagtccaatacggaaggatgataatgatccagcatctcgtccttcatcagcagctgaagcttcatcatcatcacctcctcctcctgagcagaaggatcatccagcatctcttccttcatcagcagctgaagtatcatcatcatcatcaccaccacctcctcctcctgggcagaagtatgatgtgtttttgagtttcaggggtgctgacactcgcaagggtatcacatctgatctataccatcgactgcagaggaggggaattaaaacattcatggataatccagatcttgaagttggggatgctatttctgacactctcttagctgcaattaaagaatcaagttttgcaatcgttgttctctcgcaaaattatgcttcttctacttggtgtttggaggaacttagagagatttgtctatgcatggaagacgacagtagaatcctgccacttttttataatgttgatcctactgatgtgcgatttcagaagaggagtttcgaagatgctttcactatgcatgtaaaatctgggcgacacaaatcagagaaggtggaggagtggaaagctgctttatacaaagtggccaatatctctgggtggaatacaaatgatcataagactcaccaagaactgatcgactccattgtggaatctgtctaccgtaaagccttacctgctgcagttgtgttcatgggagagttcgaagagtttcaagcaacaagacaagccatggatgaggttacgaaggccctaaaagacgatgaagtcaatgccgttggggtgtacggcatgggaggcgtcggcaagacaaccatggtaaaacatgtcgctgcacaagtccgcaaaaatgggatttttcatcatgtaattatggctgtcgtttcacaaaatcctgatttcgaaaaacttcaagatgcattggcagagcagttgggcttcaaattgtgggaggagacagaaactggaagaattgctagattgaataaggagataatgagaacagaaaaactccttataatcttggacgatgtttgggggagaacagagttatcaaagatagggattcccagctacaaggaacttcaaaagtgcaagtccaaagtcctactcaccacaaggagattgaatgtatgccttaccatggagagccaagcaaaaattaaactcagtatcttatcagaagaagatgcttggaacttgtttgtgaacaaggcacgaaggtcatttgaatcgaccacttttgagggtgtagcgaggaaggtagctggagaatgcaaaggtctacccattgcattgatagcagttgcaagggcacttggggataaacatctggaggaatggcagacagcagctcaacaattagagaattcgcaacttgccaaccctgatcatgacgaagatgctttcagatgtataaaattaagctatgattacttgaaagatgaggactacaagtcatgcttctga

Protein Analysis

519

Amino Acids

58.28

Weight (kDa)

5.98

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 549, 1109
AasI GACNNNNNNGTC 1 cut(s) 857
Acc36I ACCTGC 1 cut(s) 775
AccI GTMKAC 2 cut(s) 750, 1375
AciI CCGC 3 cut(s) 23, 85, 934
AclWI GGATC 3 cut(s) 113, 195, 551
AcoI YGGCCR 1 cut(s) 675
AcsI RAATTY 1 cut(s) 1459
AcuI CTGAAG 2 cut(s) 168, 240
AcyI GRCGYC 2 cut(s) 74, 891
AfaI GTAC 1 cut(s) 878
AfiI CCNNNNNNNGG 2 cut(s) 257, 1234
AflIII ACRYGT 1 cut(s) 916
AgsI TTSAA 9 cut(s) 383, 806, 1004, 1033, 1075, 1178, 1219, 1322, 1531
AhdI GACNNNNNGTC 1 cut(s) 1546
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 9 cut(s) 146, 152, 218, 416, 659, 1164, 1358, 1445, 1518
AluI AGCT 9 cut(s) 146, 152, 218, 416, 659, 1164, 1358, 1445, 1518
Alw26I GTCTC 1 cut(s) 1040
AlwI GGATC 3 cut(s) 113, 195, 551
AlwNI CAGNNNCTG 3 cut(s) 146, 218, 1055
AoxI GGCC 2 cut(s) 675, 840
ApeKI GCWGC 7 cut(s) 143, 215, 416, 659, 770, 923, 1442
ApoI RAATTY 1 cut(s) 1459
AseI ATTAAT 1 cut(s) 57
Asp700I GAANNNNTTC 2 cut(s) 801, 999
AspS9I GGNCC 2 cut(s) 89, 841
AsuHPI GGTGA 5 cut(s) 37, 156, 231, 707, 1195
AsuII TTCGAA 3 cut(s) 591, 795, 993
AvaII GGWCC 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 1408
BalI TGGCCA 1 cut(s) 677
BbsI GAAGAC 1 cut(s) 525
BbvI GCAGC 7 cut(s) 155, 227, 403, 646, 757, 910, 1454
BccI CCATC 1 cut(s) 339
BceAI ACGGC 2 cut(s) 851, 895
BciT130I CCWGG 1 cut(s) 258
BclI TGATCA 2 cut(s) 703, 1480
BcoDI GTCTC 1 cut(s) 1040
BfaI CTAG 1 cut(s) 1068
BfmI CTRYAG 2 cut(s) 338, 771
BfuAI ACCTGC 1 cut(s) 775
BglII AGATCT 1 cut(s) 376
BisI GCNGC 7 cut(s) 144, 216, 417, 660, 771, 924, 1443
BlsI GCNGC 7 cut(s) 145, 217, 418, 661, 772, 925, 1444
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 89
BmeRI GACNNNNNGTC 1 cut(s) 1546
BmgT120I GGNCC 2 cut(s) 89, 841
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 7 cut(s) 134, 206, 382, 586, 997, 1270, 1483
BpiI GAAGAC 1 cut(s) 525
BpmI CTGGAG 2 cut(s) 1380, 1445
Bpu10I CCTNAGC 1 cut(s) 177
Bpu14I TTCGAA 3 cut(s) 591, 795, 993
BsaBI GATNNNNATC 2 cut(s) 117, 1419
BsaHI GRCGYC 2 cut(s) 74, 891
BsaJI CCNNGG 4 cut(s) 257, 822, 906, 1233
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 1234
Bse1I ACTGG 1 cut(s) 1060
Bse3DI GCAATG 1 cut(s) 1380
Bse8I GATNNNNATC 2 cut(s) 117, 1419
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 4 cut(s) 257, 822, 906, 1233
BseGI GGATG 4 cut(s) 115, 190, 397, 832
BseJI GATNNNNATC 2 cut(s) 117, 1419
BseLI CCNNNNNNNGG 2 cut(s) 257, 1234
BseMI GCAATG 1 cut(s) 1380
BseMII CTCAG 2 cut(s) 168, 1273
BseNI ACTGG 1 cut(s) 1060
BseRI GAGGAG 8 cut(s) 159, 162, 240, 243, 358, 598, 662, 1058
BseSI GKGCMC 1 cut(s) 1408
BseXI GCAGC 7 cut(s) 155, 227, 403, 646, 757, 910, 1454
BseYI CCCAGC 1 cut(s) 1160
BsgI GTGCAG 1 cut(s) 909
BshFI GGCC 2 cut(s) 677, 842
BslI CCNNNNNNNGG 2 cut(s) 257, 1234
BsmAI GTCTC 1 cut(s) 1040
BsmI GAATGC 1 cut(s) 1370
BsnI GGCC 2 cut(s) 677, 842
Bsp119I TTCGAA 3 cut(s) 591, 795, 993
Bsp1286I GDGCHC 1 cut(s) 1408
Bsp143I GATC 8 cut(s) 118, 187, 322, 376, 556, 703, 726, 1480
Bsp19I CCATGG 3 cut(s) 822, 906, 1233
BspACI CCGC 3 cut(s) 23, 85, 934
BspANI GGCC 2 cut(s) 677, 842
BspCNI CTCAG 2 cut(s) 169, 1272
BspHI TCATGA 1 cut(s) 1483
BspLI GGNNCC 1 cut(s) 90
BspMAI CTGCAG 2 cut(s) 342, 775
BspMI ACCTGC 1 cut(s) 775
BspPI GGATC 3 cut(s) 113, 195, 551
BspT104I TTCGAA 3 cut(s) 591, 795, 993
BsrDI GCAATG 1 cut(s) 1380
BsrI ACTGG 1 cut(s) 1060
BssECI CCNNGG 4 cut(s) 257, 822, 906, 1233
BssMI GATC 8 cut(s) 118, 187, 322, 376, 556, 703, 726, 1480
BssNI GRCGYC 2 cut(s) 74, 891
BssT1I CCWWGG 3 cut(s) 822, 906, 1233
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 2 cut(s) 527, 755
Bst6I CTCTTC 3 cut(s) 207, 575, 792
BstACI GRCGYC 2 cut(s) 74, 891
BstBI TTCGAA 3 cut(s) 591, 795, 993
BstDEI CTNAG 4 cut(s) 177, 412, 494, 1259
BstDSI CCRYGG 3 cut(s) 822, 906, 1233
BstF5I GGATG 4 cut(s) 115, 190, 397, 832
BstKTI GATC 8 cut(s) 121, 190, 325, 379, 559, 706, 729, 1483
BstMAI GTCTC 1 cut(s) 1040
BstMBI GATC 8 cut(s) 118, 187, 322, 376, 556, 703, 726, 1480
BstMWI GCNNNNNNNGC 5 cut(s) 82, 149, 767, 888, 1391
BstNI CCWGG 1 cut(s) 258
BstNSI RCATGY 2 cut(s) 614, 920
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 2 cut(s) 338, 771
BstSLI GKGCMC 1 cut(s) 1408
BstV1I GCAGC 7 cut(s) 155, 227, 403, 646, 757, 910, 1454
BstV2I GAAGAC 1 cut(s) 525
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 2 cut(s) 677, 842
BtgI CCRYGG 3 cut(s) 822, 906, 1233
BtsCI GGATG 4 cut(s) 115, 190, 397, 832
BveI ACCTGC 1 cut(s) 775
CaiI CAGNNNCTG 3 cut(s) 146, 218, 1055
CciI TCATGA 1 cut(s) 1483
Cfr13I GGNCC 2 cut(s) 89, 841
CseI GACGC 2 cut(s) 82, 880
Csp6I GTAC 1 cut(s) 877
CviQI GTAC 1 cut(s) 877
DdeI CTNAG 4 cut(s) 177, 412, 494, 1259
DpnI GATC 8 cut(s) 120, 189, 324, 378, 558, 705, 728, 1482
DpnII GATC 8 cut(s) 118, 187, 322, 376, 556, 703, 726, 1480
DrdI GACNNNNNNGTC 1 cut(s) 857
DriI GACNNNNNGTC 1 cut(s) 1546
DseDI GACNNNNNNGTC 1 cut(s) 857
EaeI YGGCCR 1 cut(s) 675
Eam1104I CTCTTC 3 cut(s) 207, 575, 792
Eam1105I GACNNNNNGTC 1 cut(s) 1546
EarI CTCTTC 3 cut(s) 207, 575, 792
Eco130I CCWWGG 3 cut(s) 822, 906, 1233
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 2 cut(s) 168, 240
EcoO109I RGGNCCY 1 cut(s) 841
EcoRI GAATTC 1 cut(s) 1459
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 3 cut(s) 822, 906, 1233
EcoT22I ATGCAT 3 cut(s) 515, 612, 1012
ErhI CCWWGG 3 cut(s) 822, 906, 1233
FalI AAGNNNNNCTT 1 cut(s) 1538
FauI CCCGC 1 cut(s) 78
FbaI TGATCA 2 cut(s) 703, 1480
FblI GTMKAC 2 cut(s) 750, 1375
Fnu4HI GCNGC 7 cut(s) 144, 216, 417, 660, 771, 924, 1443
FokI GGATG 4 cut(s) 122, 177, 404, 839
Fsp4HI GCNGC 7 cut(s) 144, 216, 417, 660, 771, 924, 1443
FspBI CTAG 1 cut(s) 1068
GluI GCNGC 7 cut(s) 144, 216, 417, 660, 771, 924, 1443
GsaI CCCAGC 1 cut(s) 1164
GsuI CTGGAG 2 cut(s) 1380, 1445
HaeIII GGCC 2 cut(s) 677, 842
HgaI GACGC 2 cut(s) 82, 880
Hin1I GRCGYC 2 cut(s) 74, 891
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 7 cut(s) 428, 531, 712, 731, 743, 1156, 1322
HphI GGTGA 5 cut(s) 37, 156, 231, 707, 1195
Hpy166II GTNNAC 4 cut(s) 751, 877, 1300, 1376
Hpy188I TCNGA 7 cut(s) 322, 403, 579, 637, 1273, 1502, 1559
Hpy188III TCNNGA 7 cut(s) 176, 374, 380, 986, 1004, 1424, 1484
Hpy8I GTNNAC 4 cut(s) 751, 877, 1300, 1376
Hpy99I CGWCG 1 cut(s) 896
HpyAV CCTTC 8 cut(s) 100, 144, 178, 216, 634, 832, 1305, 1345
HpyCH4III ACNGT 2 cut(s) 527, 755
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 149, 767, 888, 1391
HpyF3I CTNAG 4 cut(s) 177, 412, 494, 1259
Hsp92I GRCGYC 2 cut(s) 74, 891
Ksp22I TGATCA 2 cut(s) 703, 1480
Kzo9I GATC 8 cut(s) 118, 187, 322, 376, 556, 703, 726, 1480
Lsp1109I GCAGC 7 cut(s) 155, 227, 403, 646, 757, 910, 1454
LweI GCATC 7 cut(s) 134, 206, 382, 586, 997, 1270, 1483
MaeI CTAG 1 cut(s) 1068
MaeIII GTNAC 2 cut(s) 44, 832
MalI GATC 8 cut(s) 120, 189, 324, 378, 558, 705, 728, 1482
MboI GATC 8 cut(s) 118, 187, 322, 376, 556, 703, 726, 1480
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 1408
MlsI TGGCCA 1 cut(s) 677
MluNI TGGCCA 1 cut(s) 677
MlyI GAGTC 2 cut(s) 706, 725
Mox20I TGGCCA 1 cut(s) 677
Mph1103I ATGCAT 3 cut(s) 515, 612, 1012
MroXI GAANNNNTTC 2 cut(s) 801, 999
MscI TGGCCA 1 cut(s) 677
MseI TTAA 5 cut(s) 57, 354, 423, 1254, 1514
Msp20I TGGCCA 1 cut(s) 677
MspA1I CMGCKG 2 cut(s) 146, 218
MspR9I CCNGG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 1370
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 5 cut(s) 82, 149, 767, 888, 1391
NcoI CCATGG 3 cut(s) 822, 906, 1233
NdeII GATC 8 cut(s) 118, 187, 322, 376, 556, 703, 726, 1480
NlaIV GGNNCC 1 cut(s) 90
NsiI ATGCAT 3 cut(s) 515, 612, 1012
NspI RCATGY 2 cut(s) 614, 920
NspV TTCGAA 3 cut(s) 591, 795, 993
PagI TCATGA 1 cut(s) 1483
PciI ACATGT 1 cut(s) 916
PctI GAATGC 1 cut(s) 1370
PdmI GAANNNNTTC 2 cut(s) 801, 999
PfeI GAWTC 5 cut(s) 428, 531, 743, 1156, 1322
PkrI GCNGC 7 cut(s) 145, 217, 418, 661, 772, 925, 1444
PleI GAGTC 2 cut(s) 706, 725
PpsI GAGTC 2 cut(s) 706, 725
PscI ACATGT 1 cut(s) 916
PshBI ATTAAT 1 cut(s) 57
PsiI TTATAA 2 cut(s) 549, 1109
Psp6I CCWGG 1 cut(s) 256
PspFI CCCAGC 1 cut(s) 1160
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 2 cut(s) 89, 841
PstI CTGCAG 2 cut(s) 342, 775
PstNI CAGNNNCTG 3 cut(s) 146, 218, 1055
PsuI RGATCY 1 cut(s) 376
PvuII CAGCTG 2 cut(s) 146, 218
RsaI GTAC 1 cut(s) 878
RsaNI GTAC 1 cut(s) 877
SaqAI TTAA 5 cut(s) 57, 354, 423, 1254, 1514
SatI GCNGC 7 cut(s) 144, 216, 417, 660, 771, 924, 1443
Sau3AI GATC 8 cut(s) 118, 187, 322, 376, 556, 703, 726, 1480
Sau96I GGNCC 2 cut(s) 89, 841
SchI GAGTC 2 cut(s) 706, 725
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 1408
SfaNI GCATC 7 cut(s) 134, 206, 382, 586, 997, 1270, 1483
SfcI CTRYAG 2 cut(s) 338, 771
SfuI TTCGAA 3 cut(s) 591, 795, 993
SinI GGWCC 1 cut(s) 89
SsiI CCGC 3 cut(s) 23, 85, 934
SspMI CTAG 1 cut(s) 1068
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 3 cut(s) 822, 906, 1233
TaaI ACNGT 2 cut(s) 527, 755
TaqI TCGA 6 cut(s) 334, 591, 729, 795, 993, 1325
TfiI GAWTC 5 cut(s) 428, 531, 743, 1156, 1322
Tru1I TTAA 5 cut(s) 57, 354, 423, 1254, 1514
Tru9I TTAA 5 cut(s) 57, 354, 423, 1254, 1514
TseI GCWGC 7 cut(s) 143, 215, 416, 659, 770, 923, 1442
TspDTI ATGAA 8 cut(s) 95, 126, 144, 198, 352, 772, 870, 941
TspGWI ACGGA 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 89
VspI ATTAAT 1 cut(s) 57
XapI RAATTY 1 cut(s) 1459
XceI RCATGY 2 cut(s) 614, 920
XmiI GTMKAC 2 cut(s) 750, 1375
XmnI GAANNNNTTC 2 cut(s) 801, 999
XspI CTAG 1 cut(s) 1068
Zsp2I ATGCAT 3 cut(s) 515, 612, 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.