Rroxscaffold_6G00393840

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000466
Physical Location & Seq
Reverse (-)
14066460 .. 14066951
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393840.1

Sequence Viewer

Length: 492 bp
ATGGCATCCAGTTCCGAATTAGTATGTGCATCAGATCCATGTTGGAAGTATGATGTGTTTTTGAGTTTCAGGGGTGTAGACACTCGCAAGGGGATCACATTCGACATACACGATCGGCTAAATAGGAGTGGAATCAAAACATTCATGGATGAGCAGGACCTTCAAGTAGGGGATGCTATTTCTCCCACTCTCTTAGCAGCAATCAAAGAATCAAGGTTTGCAATTGTTGTTCTCTCGCAAAATTATGCTTCTTCTGCTTGGTGTCTGGAGGAACTTAGAGAGATTTGTCTATCCATGGAAGACAACAGAATTTTGCCACTTTTTTATCATGTTGATCCTACTGATGTTCGATATCAAAAGAGGAGTTTCGAAGAAGCTTTTTCTAAGCATGAAACCTCTCGGCGACATGAAACAGAGAAAGTGAAGCAATGGAAAGCTGCTTTAAACAAAGTGGCCGGTTTTTCTGGGTGGAATACAAATGATTATAAGTAA

Protein Analysis

163

Amino Acids

18.8

Weight (kDa)

6.09

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 16 - 160 2.1e-43 TIR domain
TIR_2 PF13676 19 - 114 4.2e-17 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
AccI GTMKAC 1 cut(s) 78
AclWI GGATC 3 cut(s) 29, 101, 329
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 1 cut(s) 309
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 2 cut(s) 377, 437
AluI AGCT 2 cut(s) 377, 437
AlwI GGATC 3 cut(s) 29, 101, 329
AoxI GGCC 1 cut(s) 453
ApeKI GCWGC 2 cut(s) 197, 437
ApoI RAATTY 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 157
AsuII TTCGAA 1 cut(s) 369
AvaII GGWCC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 209, 424
BisI GCNGC 2 cut(s) 198, 438
BlsI GCNGC 2 cut(s) 199, 439
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmsI GCATC 3 cut(s) 14, 38, 163
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 294
Bse118I RCCGGY 1 cut(s) 455
Bse1I ACTGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 434
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 3 cut(s) 5, 154, 178
BseMI GCAATG 1 cut(s) 434
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 1 cut(s) 376
BseXI GCAGC 2 cut(s) 209, 424
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 1 cut(s) 455
BsiEI CGRYCG 1 cut(s) 115
BsiSI CCGG 1 cut(s) 456
BsnI GGCC 1 cut(s) 455
Bsp119I TTCGAA 1 cut(s) 369
Bsp143I GATC 4 cut(s) 34, 93, 112, 334
Bsp19I CCATGG 1 cut(s) 294
BspANI GGCC 1 cut(s) 455
BspPI GGATC 3 cut(s) 29, 101, 329
BspT104I TTCGAA 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 455
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 455
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 4 cut(s) 34, 93, 112, 334
BssT1I CCWWGG 1 cut(s) 294
BstBI TTCGAA 1 cut(s) 369
BstDEI CTNAG 3 cut(s) 193, 275, 384
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 3 cut(s) 5, 154, 178
BstKTI GATC 4 cut(s) 37, 96, 115, 337
BstMBI GATC 4 cut(s) 34, 93, 112, 334
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 209, 424
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 1 cut(s) 455
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 5, 154, 178
Cfr10I RCCGGY 1 cut(s) 455
Cfr13I GGNCC 1 cut(s) 157
CviAII CATG 6 cut(s) 39, 145, 295, 329, 389, 407
CviJI RGCY 4 cut(s) 118, 377, 437, 455
CviKI_1 RGCY 4 cut(s) 118, 377, 437, 455
DdeI CTNAG 3 cut(s) 193, 275, 384
DpnI GATC 4 cut(s) 36, 95, 114, 336
DpnII GATC 4 cut(s) 34, 93, 112, 334
DraI TTTAAA 1 cut(s) 444
EaeI YGGCCR 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 294
Eco32I GATATC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 157
EcoRV GATATC 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 6 cut(s) 42, 148, 298, 332, 392, 410
FatI CATG 6 cut(s) 38, 144, 294, 328, 388, 406
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 198, 438
FokI GGATG 2 cut(s) 161, 185
Fsp4HI GCNGC 2 cut(s) 198, 438
GluI GCNGC 2 cut(s) 198, 438
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 1 cut(s) 455
HapII CCGG 1 cut(s) 456
Hin1II CATG 6 cut(s) 42, 148, 298, 332, 392, 410
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 2 cut(s) 132, 209
HpaII CCGG 1 cut(s) 456
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 16, 34
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 170
HpyCH4V TGCA 2 cut(s) 29, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 3 cut(s) 193, 275, 384
Hsp92II CATG 6 cut(s) 42, 148, 298, 332, 392, 410
Kzo9I GATC 4 cut(s) 34, 93, 112, 334
LpnPI CCDG 6 cut(s) 22, 55, 140, 251, 450, 469
Lsp1109I GCAGC 2 cut(s) 209, 424
LweI GCATC 3 cut(s) 14, 38, 163
MalI GATC 4 cut(s) 36, 95, 114, 336
MboI GATC 4 cut(s) 34, 93, 112, 334
MboII GAAGA 3 cut(s) 243, 311, 383
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 34
MluCI AATT 4 cut(s) 17, 222, 241, 309
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 3 cut(s) 262, 354, 406
MseI TTAA 1 cut(s) 443
MspI CCGG 1 cut(s) 456
MunI CAATTG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 254
NcoI CCATGG 1 cut(s) 294
NdeII GATC 4 cut(s) 34, 93, 112, 334
NlaIII CATG 6 cut(s) 42, 148, 298, 332, 392, 410
NmeAIII GCCGAG 1 cut(s) 379
NspV TTCGAA 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PfeI GAWTC 2 cut(s) 132, 209
PkrI GCNGC 2 cut(s) 199, 439
Ple19I CGATCG 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 157
PsiI TTATAA 1 cut(s) 486
Psp5II RGGWCCY 1 cut(s) 157
PspPI GGNCC 1 cut(s) 157
PspPPI RGGWCCY 1 cut(s) 157
PsuI RGATCY 1 cut(s) 34
PvuI CGATCG 1 cut(s) 115
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 2 cut(s) 198, 438
Sau3AI GATC 4 cut(s) 34, 93, 112, 334
Sau96I GGNCC 1 cut(s) 157
SetI ASST 5 cut(s) 162, 218, 379, 398, 439
SfaNI GCATC 3 cut(s) 14, 38, 163
SfuI TTCGAA 1 cut(s) 369
SinI GGWCC 1 cut(s) 157
Sse9I AATT 4 cut(s) 17, 222, 241, 309
StyI CCWWGG 1 cut(s) 294
TaqI TCGA 3 cut(s) 102, 349, 369
TasI AATT 4 cut(s) 17, 222, 241, 309
TfiI GAWTC 2 cut(s) 132, 209
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TseI GCWGC 2 cut(s) 197, 437
TspDTI ATGAA 3 cut(s) 133, 405, 423
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.