RchiOBHm_Chr1g0327991

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000466
Physical Location & Seq
Reverse (-)
17080001 .. 17080603
603 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55747

Sequence Viewer

Length: 474 bp
ATGGCGTCAACCTCTTCTCGTCGTCGTCAATGGAAATACGATGTCTTTCTGAGTTTCAGGGGGGTAGATACCCGCTTTGGTTTTACCTCTCTTCTGTATGCTGCACTAACTCTGAGAGGAATTCTCACCTTTATGGATGACCCAGAACTTGAGAAAGGTCTCTCACGGGGATATGCTTCTTCGTCATGGTGCTTGGATGAACTCGTCAAGATTATTCAATGCATGAAAGACATGGGCCAACAAGTCCTCCCCGTCTTCTACTGGGTGGATCCTTCTGATGTGCGGCACCAAAGGCGAAGTTTTGAGATCAAAGTAAGGGAACCCCAAGTAGACGTAAGGGAACATGAAGAAGTTTATGGGAAGCCTACTGAGGACAGACTAACTGCCTGGAGAGCTGCTTTGACTGAGGTCGCCAATCTTTCTGGCTGGCATGCCAAGGATTTTACGTTAGTCTCCTTACTACTCATACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

157

Amino Acids

18.22

Weight (kDa)

6.83

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 12 - 54 4.9e-07 TIR domain
TIR PF01582 54 - 150 1.5e-19 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 285
AccI GTMKAC 1 cut(s) 330
AciI CCGC 2 cut(s) 73, 283
AclWI GGATC 2 cut(s) 263, 276
AcsI RAATTY 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 1 cut(s) 386
AluBI AGCT 1 cut(s) 395
AluI AGCT 1 cut(s) 395
Alw26I GTCTC 2 cut(s) 164, 457
AlwI GGATC 2 cut(s) 263, 276
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 101, 395
ApoI RAATTY 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 118
BamHI GGATCC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 247
BbvI GCAGC 2 cut(s) 88, 382
BciT130I CCWGG 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 164, 457
BisI GCNGC 3 cut(s) 102, 284, 396
BlsI GCNGC 3 cut(s) 103, 285, 397
Bme1390I CCNGG 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 3 cut(s) 270, 287, 321
BmrFI CCNGG 1 cut(s) 388
BmrI ACTGGG 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 271
BoxI GACNNNNGTC 1 cut(s) 407
BpiI GAAGAC 1 cut(s) 247
BplI GAGNNNNNCTC 2 cut(s) 108, 140
BpmI CTGGAG 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse1I ACTGG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 388
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 2 cut(s) 142, 202
BseMII CTCAG 4 cut(s) 41, 104, 360, 396
BseNI ACTGG 1 cut(s) 266
BseXI GCAGC 2 cut(s) 88, 382
BsgI GTGCAG 1 cut(s) 87
BshFI GGCC 1 cut(s) 237
BshNI GGYRCC 1 cut(s) 285
BsmAI GTCTC 2 cut(s) 164, 457
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 268, 306
BspACI CCGC 2 cut(s) 73, 283
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 4 cut(s) 42, 105, 361, 397
BspLI GGNNCC 3 cut(s) 270, 287, 321
BspPI GGATC 2 cut(s) 263, 276
BspT107I GGYRCC 1 cut(s) 285
BspTNI GGTCTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 2 cut(s) 268, 306
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 388
Bst6I CTCTTC 2 cut(s) 19, 96
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 428, 432
BstDEI CTNAG 5 cut(s) 50, 113, 369, 405, 471
BstF5I GGATG 2 cut(s) 142, 202
BstKTI GATC 2 cut(s) 271, 309
BstMAI GTCTC 2 cut(s) 164, 457
BstMBI GATC 2 cut(s) 268, 306
BstMWI GCNNNNNNNGC 2 cut(s) 292, 392
BstNI CCWGG 1 cut(s) 388
BstNSI RCATGY 1 cut(s) 434
BstPAI GACNNNNGTC 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 386
BstV1I GCAGC 2 cut(s) 88, 382
BstV2I GAAGAC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 2 cut(s) 142, 202
Cac8I GCNNGC 2 cut(s) 428, 432
Cfr13I GGNCC 1 cut(s) 235
CviAII CATG 5 cut(s) 186, 223, 232, 344, 431
CviJI RGCY 4 cut(s) 237, 364, 395, 426
CviKI_1 RGCY 4 cut(s) 237, 364, 395, 426
DdeI CTNAG 5 cut(s) 50, 113, 369, 405, 471
DpnI GATC 2 cut(s) 270, 308
DpnII GATC 2 cut(s) 268, 306
Eam1104I CTCTTC 2 cut(s) 19, 96
EarI CTCTTC 2 cut(s) 19, 96
Eco130I CCWWGG 1 cut(s) 435
Eco31I GGTCTC 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 386
EcoT14I CCWWGG 1 cut(s) 435
EcoT22I ATGCAT 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 5 cut(s) 189, 226, 235, 347, 434
FatI CATG 5 cut(s) 185, 222, 231, 343, 430
FauI CCCGC 1 cut(s) 80
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 3 cut(s) 102, 284, 396
FokI GGATG 2 cut(s) 149, 209
Fsp4HI GCNGC 3 cut(s) 102, 284, 396
GluI GCNGC 3 cut(s) 102, 284, 396
GsuI CTGGAG 1 cut(s) 409
HaeIII GGCC 1 cut(s) 237
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 189, 226, 235, 347, 434
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 2 cut(s) 9, 331
Hpy188I TCNGA 3 cut(s) 51, 114, 277
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 2 cut(s) 9, 331
Hpy99I CGWCG 2 cut(s) 24, 27
HpyAV CCTTC 1 cut(s) 282
HpyCH4IV ACGT 2 cut(s) 333, 446
HpyCH4V TGCA 2 cut(s) 104, 222
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 392
HpyF3I CTNAG 5 cut(s) 50, 113, 369, 405, 471
HpySE526I ACGT 2 cut(s) 333, 446
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 189, 226, 235, 347, 434
Kzo9I GATC 2 cut(s) 268, 306
LpnPI CCDG 7 cut(s) 43, 156, 247, 373, 400, 408, 412
Lsp1109I GCAGC 2 cut(s) 88, 382
MaeII ACGT 2 cut(s) 333, 446
MalI GATC 2 cut(s) 270, 308
MboI GATC 2 cut(s) 268, 306
MboII GAAGA 5 cut(s) 6, 83, 171, 247, 359
MflI RGATCY 1 cut(s) 268
MluCI AATT 1 cut(s) 120
MnlI CCTC 6 cut(s) 22, 97, 110, 257, 364, 400
Mph1103I ATGCAT 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 388
MvaI CCWGG 1 cut(s) 388
MwoI GCNNNNNNNGC 2 cut(s) 292, 392
NdeII GATC 2 cut(s) 268, 306
NlaIII CATG 5 cut(s) 189, 226, 235, 347, 434
NlaIV GGNNCC 3 cut(s) 270, 287, 321
NsiI ATGCAT 1 cut(s) 224
NspI RCATGY 1 cut(s) 434
PaeI GCATGC 1 cut(s) 434
PkrI GCNGC 3 cut(s) 103, 285, 397
PshAI GACNNNNGTC 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 3 cut(s) 270, 287, 321
PspPI GGNCC 1 cut(s) 235
PsuI RGATCY 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 131
SatI GCNGC 3 cut(s) 102, 284, 396
Sau3AI GATC 2 cut(s) 268, 306
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 388
SetI ASST 9 cut(s) 14, 89, 131, 160, 336, 397, 411, 449, 472
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SphI GCATGC 1 cut(s) 434
Sse9I AATT 1 cut(s) 120
SsiI CCGC 2 cut(s) 73, 283
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 1 cut(s) 435
TaiI ACGT 2 cut(s) 336, 449
TasI AATT 1 cut(s) 120
TauI GCSGC 1 cut(s) 286
TseI GCWGC 2 cut(s) 101, 395
TspDTI ATGAA 3 cut(s) 213, 239, 360
XapI RAATTY 1 cut(s) 120
XceI RCATGY 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 330
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.