Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019291.1

Orthogroup ID

OG0000466

Physical Location & Seq

Genomic Coordinates Reverse (-)

2452 .. 2775

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019291.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atggtgtcaacctgttctcgtcgtcaatggaggtacgatgcgtttctaagtttcagagggccagatacgcacaaggggattacctccgaggtgtatgatagactagaacggagaggaattaaaacctttattgatcacacctatcttgaagtaggagcttccattagcctgtctcttttagctgcaattgaggagtcaagatttgccattgtcattgtttcacccaactatgctttttcgtcatgttgcttggatgaacttgtcaagattatgcaatgcaagaagagatgtggatggaagttatccccctgttctacaacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

107

Amino Acids

12.19

Weight (kDa)

8.82

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica	MD12G1125500.v1.1
prunus_persica	Prupe.2G112700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata	RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora	Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa	Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha	Rh1DG060500 Rh6BG033900
rosa_wichuraiana	Rw0G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	149
AluBI	AGCT	2 cut(s)	158, 182
AluI	AGCT	2 cut(s)	158, 182
Alw26I	GTCTC	1 cut(s)	177
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	288
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	104
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	59
BmsI	GCATC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	259, 299
BseMI	GCAATG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	259, 299
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	259, 299
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	4 cut(s)	61, 158, 168, 182
CviKI_1	RGCY	4 cut(s)	61, 158, 168, 182
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
FaeI	CATG	1 cut(s)	246
FaiI	YATR	4 cut(s)	96, 231, 244, 272
FatI	CATG	1 cut(s)	242
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	266, 306
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	1 cut(s)	213
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	2 cut(s)	56, 88
Hpy188III	TCNNGA	3 cut(s)	146, 198, 265
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	1 cut(s)	24
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	3 cut(s)	185, 274, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	3 cut(s)	25, 75, 182
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	320
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	295
MfeI	CAATTG	1 cut(s)	186
MluCI	AATT	2 cut(s)	117, 186
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	6 cut(s)	24, 50, 82, 94, 107, 184
MseI	TTAA	1 cut(s)	120
MunI	CAATTG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	203
SetI	ASST	9 cut(s)	14, 35, 86, 93, 128, 143, 160, 184, 323
SfaNI	GCATC	1 cut(s)	28
Sse9I	AATT	2 cut(s)	117, 186
SspMI	CTAG	1 cut(s)	104
TaiI	ACGT	1 cut(s)	323
TasI	AATT	2 cut(s)	117, 186
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	124
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.