Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000466

Physical Location & Seq

Genomic Coordinates Reverse (-)

30932003 .. 30932725

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024020

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGGATGATTATTGTGTTTAGTGTGGTAATGGTGCAATGGTTCGGTGTCATAGCCTGTCTCAAGTGGATATGGAAGAATTGGTTCATTATTGTGGTGATTGTGACATGGAACGTAATAGCCAGTCTTGGGTGGATATGGAAGAGTAGGTTCAGTTACATGGTTGAAACCCCACAACCAATTTCAGAGGATAATCAAGAACCGGTTGACGTCGATGCCTCTGCATCTCTTCCTTCATCATCAGCTGAATCATCAGCTCCTAGGTGGAAGCATGATGTGTTTTTGAGTTTCCGGGGTGTAGACACTCGCAAAGGTATTGCATTCGAATTATACGATCGACTGCGAAACAGGAGAGGAATCAAAACATTCATGGATGACCAAGACCTTCAAGTAGGGGATGTTATTTCTCCCACTCTCCTAATGGCAATTAAAGAATCAAGGTTTGCAATTATTGTTCTCTCTCCATACTATGCCTGTTCCACTTGGTGTTTGGAGGAACTTAGAAACATTTGTGAATGCATGGAAGAAGACAACAATAGAATTCTGCCACTTTTTTATAATGTGGATCCTAGTGATGTACGACATCAGAAGAGGAGTTTTGGAGATGCTTTCACTAAGCATGAAAAATCTGGGAAACACAAATCAGAAAAGGTGCAGCAGTGGAGAGATGCTTTAACAAAAGTGGCAAATTTCTCTGGATGGCATACACTGAATTATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

241

Amino Acids

27.98

Weight (kDa)

8.23

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	90 - 238	7.9e-48	TIR domain
TIR_2	PF13676	93 - 204	2.5e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica	MD12G1125500.v1.1
prunus_persica	Prupe.2G112700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata	RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora	Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa	Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha	Rh1DG060500 Rh6BG033900
rosa_wichuraiana	Rw0G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	558, 717
AatII	GACGTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	300
AclWI	GGATC	2 cut(s)	560, 573
AcsI	RAATTY	2 cut(s)	540, 688
AcyI	GRCGYC	1 cut(s)	210
AdeI	CACNNNGTG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	579
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgeI	ACCGGT	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	167, 389
AluBI	AGCT	2 cut(s)	245, 257
AluI	AGCT	2 cut(s)	245, 257
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	560, 573
ApeKI	GCWGC	1 cut(s)	655
ApoI	RAATTY	2 cut(s)	540, 688
AsiGI	ACCGGT	1 cut(s)	202
Asp700I	GAANNNNTTC	1 cut(s)	83
AspA2I	CCTAGG	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	109
AsuII	TTCGAA	1 cut(s)	324
AvrII	CCTAGG	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	565
BbsI	GAAGAC	1 cut(s)	534
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	1 cut(s)	693
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	261, 570
BisI	GCNGC	1 cut(s)	656
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	657
Bme1390I	CCNGG	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	4 cut(s)	205, 233, 595, 658
BpiI	GAAGAC	1 cut(s)	534
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	260, 292
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	260, 292
BseGI	GGATG	4 cut(s)	12, 379, 403, 704
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMI	GCAATG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	607
BseXI	GCAGC	1 cut(s)	667
BsgI	GTGCAG	1 cut(s)	674
Bsh1285I	CGRYCG	1 cut(s)	337
BshTI	ACCGGT	1 cut(s)	202
BsiEI	CGRYCG	1 cut(s)	337
BsiSI	CCGG	2 cut(s)	203, 292
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	65
BsmI	GAATGC	2 cut(s)	320, 521
Bsp119I	TTCGAA	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	334, 565
BspLI	GGNNCC	1 cut(s)	567
BspPI	GGATC	2 cut(s)	560, 573
BspT104I	TTCGAA	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	260, 292
BssMI	GATC	2 cut(s)	334, 565
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	260
Bst6I	CTCTTC	3 cut(s)	137, 234, 584
BstACI	GRCGYC	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	500, 615
BstF5I	GGATG	4 cut(s)	12, 379, 403, 704
BstKTI	GATC	2 cut(s)	337, 568
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	334, 565
BstMCI	CGRYCG	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	667
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BtsCI	GGATG	4 cut(s)	12, 379, 403, 704
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	2 cut(s)	665, 707
Cfr10I	RCCGGY	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	578
CspAI	ACCGGT	1 cut(s)	202
CviAII	CATG	6 cut(s)	108, 160, 272, 370, 520, 620
CviJI	RGCY	4 cut(s)	56, 122, 245, 257
CviKI_1	RGCY	4 cut(s)	56, 122, 245, 257
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	2 cut(s)	500, 615
DpnI	GATC	2 cut(s)	336, 567
DpnII	GATC	2 cut(s)	334, 565
DraIII	CACNNNGTG	1 cut(s)	486
Eam1104I	CTCTTC	3 cut(s)	137, 234, 584
EarI	CTCTTC	3 cut(s)	137, 234, 584
Eco130I	CCWWGG	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	521
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	6 cut(s)	111, 163, 275, 373, 523, 623
FatI	CATG	6 cut(s)	107, 159, 271, 369, 519, 619
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	656
FokI	GGATG	4 cut(s)	19, 386, 410, 711
Fsp4HI	GCNGC	1 cut(s)	656
FspBI	CTAG	2 cut(s)	261, 570
GluI	GCNGC	1 cut(s)	656
HapII	CCGG	2 cut(s)	203, 292
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	6 cut(s)	111, 163, 275, 373, 523, 623
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	3 cut(s)	248, 357, 434
HpaII	CCGG	2 cut(s)	203, 292
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	208, 301
Hpy188I	TCNGA	3 cut(s)	187, 588, 646
Hpy188III	TCNNGA	2 cut(s)	197, 696
Hpy8I	GTNNAC	2 cut(s)	208, 301
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	243, 395
HpyCH4IV	ACGT	2 cut(s)	114, 210
HpyCH4V	TGCA	6 cut(s)	37, 224, 320, 446, 519, 655
HpyF3I	CTNAG	2 cut(s)	500, 615
HpySE526I	ACGT	2 cut(s)	114, 210
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	6 cut(s)	111, 163, 275, 373, 523, 623
Kzo9I	GATC	2 cut(s)	334, 565
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	8 cut(s)	70, 136, 216, 305, 334, 487, 615, 681
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	4 cut(s)	205, 233, 595, 658
MaeI	CTAG	2 cut(s)	261, 570
MaeII	ACGT	2 cut(s)	114, 210
MaeIII	GTNAC	2 cut(s)	103, 155
MalI	GATC	2 cut(s)	336, 567
MboI	GATC	2 cut(s)	334, 565
MboII	GAAGA	6 cut(s)	88, 154, 221, 536, 539, 601
MflI	RGATCY	1 cut(s)	565
MluCI	AATT	8 cut(s)	79, 180, 326, 426, 447, 540, 688, 712
MnlI	CCTC	5 cut(s)	181, 229, 347, 487, 585
Mph1103I	ATGCAT	1 cut(s)	521
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	2 cut(s)	429, 674
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	2 cut(s)	203, 292
MspR9I	CCNGG	1 cut(s)	293
Mva1269I	GAATGC	2 cut(s)	320, 521
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	2 cut(s)	334, 565
NlaIII	CATG	6 cut(s)	111, 163, 275, 373, 523, 623
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	1 cut(s)	103
NsiI	ATGCAT	1 cut(s)	521
NspV	TTCGAA	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PctI	GAATGC	2 cut(s)	320, 521
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	248, 357, 434
PinAI	ACCGGT	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	657
Ple19I	CGATCG	1 cut(s)	337
PsiI	TTATAA	2 cut(s)	558, 717
PspN4I	GGNNCC	1 cut(s)	567
PsuI	RGATCY	1 cut(s)	565
PvuI	CGATCG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	429, 674
SatI	GCNGC	1 cut(s)	656
Sau3AI	GATC	2 cut(s)	334, 565
ScrFI	CCNGG	1 cut(s)	293
SfaNI	GCATC	4 cut(s)	205, 233, 595, 658
SfuI	TTCGAA	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	8 cut(s)	79, 180, 326, 426, 447, 540, 688, 712
SspMI	CTAG	2 cut(s)	261, 570
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	260
TaiI	ACGT	2 cut(s)	117, 213
TaqI	TCGA	3 cut(s)	213, 324, 337
TasI	AATT	8 cut(s)	79, 180, 326, 426, 447, 540, 688, 712
TfiI	GAWTC	3 cut(s)	248, 357, 434
Tru1I	TTAA	2 cut(s)	429, 674
Tru9I	TTAA	2 cut(s)	429, 674
TscAI	CASTG	2 cut(s)	665, 714
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	655
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	4 cut(s)	76, 225, 358, 636
TspRI	CASTG	2 cut(s)	665, 714
XapI	RAATTY	2 cut(s)	540, 688
XcmI	CCANNNNNNNNNTGG	2 cut(s)	418, 487
XmaJI	CCTAGG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	2 cut(s)	261, 570
ZraI	GACGTC	1 cut(s)	211
Zsp2I	ATGCAT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.